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Protein
Submitted name:

Schlafen 3, isoform CRA_b

Gene

Slfn4

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • lung alveolus development Source: RGD

Names & Taxonomyi

Protein namesi
Submitted name:
Schlafen 3, isoform CRA_bImported
Submitted name:
Schlafen-4Imported
Gene namesi
Name:Slfn4Imported
Synonyms:SLFN-4Imported, Slfn3Imported
ORF Names:rCG_34606Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 10

Organism-specific databases

RGDi620455 Slfn4

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei562 – 583HelicalSequence analysisAdd BLAST22

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

BgeeiENSRNOG00000057092 Expressed in 10 organ(s), highest expression level in spleen

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000067653

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini206 – 262AlbA_2InterPro annotationAdd BLAST57

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410JAUV Eukaryota
ENOG4111BZ2 LUCA
GeneTreeiENSGT00410000025651
HOGENOMiHOG000133056
HOVERGENiHBG057499
OMAiSTHVEMK
OrthoDBiEOG091G0916
TreeFamiTF337168

Family and domain databases

Gene3Di3.30.950.30, 1 hit
InterProiView protein in InterPro
IPR029684 Schlafen
IPR007421 Schlafen_AAA_dom
IPR038461 Schlafen_AAA_dom_sf
PANTHERiPTHR12155 PTHR12155, 1 hit
PfamiView protein in Pfam
PF04326 AlbA_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q9TPX1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSITVDQDTD YAELVLSIGE ITLGEKTRKS MKDSQRRKRE AKTFQQAVCT
60 70 80 90 100
LLNSGGGVAK ARIKNQNYDF SRDGVGQDLE NFLPHILDFP HEYLDFKQVK
110 120 130 140 150
DYFLMFVKAW KLKQKGPGIT TLKTNLYIRS ISSSIELKAV NAVKFLKSRK
160 170 180 190 200
CSKGRSDSRL SSPGTIVCNE VLNECLNLFN RDCFTCKEKF CFTKATHAEV
210 220 230 240 250
KLTPKENILE ILPQTVSSFA NADGGYLFIG LDGKTQEIIG FEAEKSDLVH
260 270 280 290 300
LESEIEKCIR QLPVTHFCEE REKIKYTCKF MEVHKPGAAC SFVCALRVER
310 320 330 340 350
FCCAVFAAEP ESWHVEDSCV KRFTAEDWVK RQMDGPACFS KQDKGPLQSS
360 370 380 390 400
RLPHSPRSCC PDNPDALQQS AGLPVISGKV ISSPEALCGK LFSTQEAHEQ
410 420 430 440 450
LLWAQLDSLP KGTLVVTKRW ALDLPLQDKH GVILDTLHIP QDSLLTLHGF
460 470 480 490 500
VLGGEDLEDD STLLRELGAE LKGYYKQTAV TLKQTLANHG SYTEKIGIAI
510 520 530 540 550
KITYLGHNKA VSLYDSSSKI HYPTKYYLTT ETAKNLEKAL AEILGSRESF
560 570 580
YSLPRQNCSD HFIFAFFLSF SFLLVFLFWS WGLNPEP
Length:587
Mass (Da):66,077
Last modified:May 1, 2000 - v1
Checksum:i04008A9217754190
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC128859 Genomic DNA No translation available.
AF168795 mRNA Translation: AAD45931.1
CH473948 Genomic DNA Translation: EDM05467.1
RefSeqiNP_446139.1, NM_053687.1
XP_008766155.1, XM_008767933.2
UniGeneiRn.80831

Genome annotation databases

EnsembliENSRNOT00000078046; ENSRNOP00000074064; ENSRNOG00000057092
ENSRNOT00000079325; ENSRNOP00000072460; ENSRNOG00000057092
GeneIDi114247
KEGGirno:114247

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC128859 Genomic DNA No translation available.
AF168795 mRNA Translation: AAD45931.1
CH473948 Genomic DNA Translation: EDM05467.1
RefSeqiNP_446139.1, NM_053687.1
XP_008766155.1, XM_008767933.2
UniGeneiRn.80831

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000067653

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000078046; ENSRNOP00000074064; ENSRNOG00000057092
ENSRNOT00000079325; ENSRNOP00000072460; ENSRNOG00000057092
GeneIDi114247
KEGGirno:114247

Organism-specific databases

CTDi20558
RGDi620455 Slfn4

Phylogenomic databases

eggNOGiENOG410JAUV Eukaryota
ENOG4111BZ2 LUCA
GeneTreeiENSGT00410000025651
HOGENOMiHOG000133056
HOVERGENiHBG057499
OMAiSTHVEMK
OrthoDBiEOG091G0916
TreeFamiTF337168

Gene expression databases

BgeeiENSRNOG00000057092 Expressed in 10 organ(s), highest expression level in spleen

Family and domain databases

Gene3Di3.30.950.30, 1 hit
InterProiView protein in InterPro
IPR029684 Schlafen
IPR007421 Schlafen_AAA_dom
IPR038461 Schlafen_AAA_dom_sf
PANTHERiPTHR12155 PTHR12155, 1 hit
PfamiView protein in Pfam
PF04326 AlbA_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiQ9TPX1_RAT
AccessioniPrimary (citable) accession number: Q9TPX1
Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: November 7, 2018
This is version 88 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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