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Entry version 146 (18 Sep 2019)
Sequence version 1 (01 May 2000)
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Protein

DExH-box ATP-dependent RNA helicase DExH12

Gene

BRR2A

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

RNA helicase that plays an essential role in pre-mRNA splicing as component of the U5 snRNP and U4/U6-U5 tri-snRNP complexes. Involved in spliceosome assembly, activation and disassembly.By similarity

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes a region in the protein which binds nucleotide phosphates. It always involves more than one amino acid and includes all residues involved in nucleotide-binding.<p><a href='/help/np_bind' target='_top'>More...</a></p>Nucleotide bindingi527 – 534ATPPROSITE-ProRule annotation8
Nucleotide bindingi1373 – 1380ATPPROSITE-ProRule annotation8

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHelicase, Hydrolase, RNA-binding
Biological processmRNA processing, mRNA splicing
LigandATP-binding, Nucleotide-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
DExH-box ATP-dependent RNA helicase DExH12Curated (EC:3.6.4.13Curated)
Alternative name(s):
BRR2 homolog ACurated
Short name:
AtBRR2A1 Publication
Pre-mRNA-splicing helicase BRR2ACurated
Protein EMBRYO DEFECTIVE 15071 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:BRR2A1 Publication
Synonyms:EMB15071 Publication
Ordered Locus Names:At1g20960Imported
ORF Names:F9H16.5Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT1G20960

The Arabidopsis Information Resource

More...
TAIRi
locus:2037375 AT1G20960

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus, Spliceosome

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the ‘Pathology and Biotech’ section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Embryo defective.1 Publication

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004352991 – 2171DExH-box ATP-dependent RNA helicase DExH12Add BLAST2171

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9SYP1

PRoteomics IDEntifications database

More...
PRIDEi
Q9SYP1

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q9SYP1

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q9SYP1 baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Interacts with CLO.

1 Publication

Protein-protein interaction databases

Protein interaction database and analysis system

More...
IntActi
Q9SYP1, 5 interactors

Molecular INTeraction database

More...
MINTi
Q9SYP1

STRING: functional protein association networks

More...
STRINGi
3702.AT1G20960.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q9SYP1

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini514 – 697Helicase ATP-binding 1PROSITE-ProRule annotationAdd BLAST184
Domaini731 – 941Helicase C-terminal 1PROSITE-ProRule annotationAdd BLAST211
Domaini1006 – 1308SEC63 1Sequence analysisAdd BLAST303
Domaini1360 – 1537Helicase ATP-binding 2PROSITE-ProRule annotationAdd BLAST178
Domaini1574 – 1779Helicase C-terminal 2PROSITE-ProRule annotationAdd BLAST206
Domaini1839 – 2157SEC63 2Sequence analysisAdd BLAST319

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a short (usually not more than 20 amino acids) conserved sequence motif of biological significance.<p><a href='/help/motif' target='_top'>More...</a></p>Motifi639 – 642DEIH boxCurated4
Motifi1479 – 1482DELH boxCurated4

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the DExH box helicase family.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0951 Eukaryota
COG1204 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000157749

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q9SYP1

KEGG Orthology (KO)

More...
KOi
K12854

Identification of Orthologs from Complete Genome Data

More...
OMAi
TLCKMID

Database of Orthologous Groups

More...
OrthoDBi
154891at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9SYP1

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.60.40.150, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR003593 AAA+_ATPase
IPR041094 Brr2_helicase_PWI
IPR035892 C2_domain_sf
IPR011545 DEAD/DEAH_box_helicase_dom
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR014756 Ig_E-set
IPR027417 P-loop_NTPase
IPR004179 Sec63-dom
IPR036390 WH_DNA-bd_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00270 DEAD, 2 hits
PF00271 Helicase_C, 1 hit
PF18149 Helicase_PWI, 1 hit
PF02889 Sec63, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00382 AAA, 2 hits
SM00487 DEXDc, 2 hits
SM00490 HELICc, 2 hits
SM00973 Sec63, 2 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF46785 SSF46785, 2 hits
SSF52540 SSF52540, 4 hits
SSF81296 SSF81296, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 2 hits
PS51194 HELICASE_CTER, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9SYP1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MANLGGGAEA HARFKQYEYR ANSSLVLTTD NRPRDTHEPT GEPETLWGKI
60 70 80 90 100
DPRSFGDRVA KGRPQELEDK LKKSKKKERD VVDDMVNIRQ SKRRRLREES
110 120 130 140 150
VLTDTDDAVY QPKTKETRAA YEAMLGLIQK QLGGQPPSIV SGAADEILAV
160 170 180 190 200
LKNDAFRNPE KKMEIEKLLN KIENHEFDQL VSIGKLITDF QEGGDSGGGR
210 220 230 240 250
ANDDEGLDDD LGVAVEFEEN EEDDEESDPD MVEEDDDEED DEPTRTGGMQ
260 270 280 290 300
VDAGINDEDA GDANEGTNLN VQDIDAYWLQ RKISQAYEQQ IDPQQCQVLA
310 320 330 340 350
EELLKILAEG DDRVVEDKLL MHLQYEKFSL VKFLLRNRLK VVWCTRLARA
360 370 380 390 400
EDQEERNRIE EEMRGLGPEL TAIVEQLHAT RATAKEREEN LQKSINEEAR
410 420 430 440 450
RLKDETGGDG GRGRRDVADR DSESGWVKGQ RQMLDLESLA FDQGGLLMAN
460 470 480 490 500
KKCDLPPGSY RSHGKGYDEV HVPWVSKKVD RNEKLVKITE MPDWAQPAFK
510 520 530 540 550
GMQQLNRVQS KVYDTALFKA ENILLCAPTG AGKTNVAMLT ILQQLEMNRN
560 570 580 590 600
TDGTYNHGDY KIVYVAPMKA LVAEVVGNLS NRLKDYGVIV RELSGDQSLT
610 620 630 640 650
GREIEETQII VTTPEKWDII TRKSGDRTYT QLVRLLIIDE IHLLHDNRGP
660 670 680 690 700
VLESIVARTL RQIETTKENI RLVGLSATLP NYEDVALFLR VDLKKGLFKF
710 720 730 740 750
DRSYRPVPLH QQYIGISVKK PLQRFQLMND LCYQKVLAGA GKHQVLIFVH
760 770 780 790 800
SRKETSKTAR AIRDTAMAND TLSRFLKEDS VTRDVLHSHE DIVKNSDLKD
810 820 830 840 850
ILPYGFAIHH AGLSRGDREI VETLFSQGHV QVLVSTATLA WGVNLPAHTV
860 870 880 890 900
IIKGTQVYNP EKGAWMELSP LDVMQMLGRA GRPQYDQHGE GIIITGYSEL
910 920 930 940 950
QYYLSLMNEQ LPIESQFISK LADQLNAEIV LGTVQNAREA CHWLGYTYLY
960 970 980 990 1000
IRMVRNPTLY GLAPDALAKD VVLEERRADL IHSAATILDK NNLVKYDRKS
1010 1020 1030 1040 1050
GYFQVTDLGR IASYYYITHG TIATYNEHLK PTMGDIDLYR LFSLSDEFKY
1060 1070 1080 1090 1100
VTVRQDEKME LAKLLDRVPI PIKETLEEPS AKINVLLQAY ISQLKLEGLS
1110 1120 1130 1140 1150
LTSDMVYITQ SAGRLVRALY EIVLKRGWAQ LAEKALNLSK MVGKRMWSVQ
1160 1170 1180 1190 1200
TPLRQFHGLS NDILMQLEKK DLVWERYYDL SAQELGELIR SPKMGKPLHK
1210 1220 1230 1240 1250
FIHQFPKVTL SAHVQPITRT VLNVELTVTP DFLWDEKIHK YVEPFWIIVE
1260 1270 1280 1290 1300
DNDGEKILHH EYFLLKKQYI DEDHTLHFTV PIFEPLPPQY FVRVVSDKWL
1310 1320 1330 1340 1350
GSETVLPVSF RHLILPEKYP PPTELLDLQP LPVTALRNPN YEILYQDFKH
1360 1370 1380 1390 1400
FNPVQTQVFT VLYNTNDNVL VAAPTGSGKT ICAEFAILRN HHEGPDATMR
1410 1420 1430 1440 1450
VVYIAPLEAI AKEQFRIWEG KFGKGLGLRV VELTGETALD LKLLEKGQII
1460 1470 1480 1490 1500
ISTPEKWDAL SRRWKQRKYV QQVSLFIVDE LHLIGGQHGP VLEVIVSRMR
1510 1520 1530 1540 1550
YISSQVINKI RIVALSTSLA NAKDLGEWIG ASSHGLFNFP PGVRPVPLEI
1560 1570 1580 1590 1600
HIQGVDISSF EARMQAMTKP TYTAIVQHAK NKKPAIVFVP TRKHVRLTAV
1610 1620 1630 1640 1650
DLMAYSHMDN PQSPDFLLGK LEELDPFVEQ IREETLKETL CHGIGYLHEG
1660 1670 1680 1690 1700
LSSLDQEIVT QLFEAGRIQV CVMSSSLCWG TPLTAHLVVV MGTQYYDGRE
1710 1720 1730 1740 1750
NSHSDYPVPD LLQMMGRASR PLLDNAGKCV IFCHAPRKEY YKKFLYEAFP
1760 1770 1780 1790 1800
VESQLQHFLH DNFNAEVVAG VIENKQDAVD YLTWTFMYRR LPQNPNYYNL
1810 1820 1830 1840 1850
QGVSHRHLSD HLSELVENTL SDLEASKCIE VEDEMELSPL NLGMIASYYY
1860 1870 1880 1890 1900
ISYTTIERFS SLLSSKTKMK GLLEILTSAS EYDMIPIRPG EEDTVRRLIN
1910 1920 1930 1940 1950
HQRFSFENPK CTDPHVKANA LLQAHFSRQN IGGNLAMDQR DVLLSATRLL
1960 1970 1980 1990 2000
QAMVDVISSN GWLNLALLAM EVSQMVTQGM WERDSMLLQL PHFTKDLAKR
2010 2020 2030 2040 2050
CQENPGKNIE TVFDLVEMED EERQELLKMS DAQLLDIARF CNRFPNIDLT
2060 2070 2080 2090 2100
YEIVGSEEVN PGKEVTLQVM LERDMEGRTE VGPVDSLRYP KTKEEGWWLV
2110 2120 2130 2140 2150
VGDTKTNQLL AIKRVSLQRK VKVKLDFTAP SEPGEKSYTL YFMCDSYLGC
2160 2170
DQEYSFSVDV KGSGAGDRME E
Length:2,171
Mass (Da):247,105
Last modified:May 1, 2000 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i6D40D04E080574B6
GO

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAL31915 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti2122 – 2124KVK → EVR in BAD95221 (Ref. 4) Curated3

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC007369 Genomic DNA Translation: AAD30595.1
CP002684 Genomic DNA Translation: AEE30046.1
CP002684 Genomic DNA Translation: AEE30047.1
AF419583 mRNA Translation: AAL31915.1 Different initiation.
AY113040 mRNA Translation: AAM47348.1
AK221168 mRNA Translation: BAD95221.1

Protein sequence database of the Protein Information Resource

More...
PIRi
E86342

NCBI Reference Sequences

More...
RefSeqi
NP_001185050.1, NM_001198121.1
NP_173520.1, NM_101949.5

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G20960.1; AT1G20960.1; AT1G20960
AT1G20960.2; AT1G20960.2; AT1G20960

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
838690

Gramene; a comparative resource for plants

More...
Gramenei
AT1G20960.1; AT1G20960.1; AT1G20960
AT1G20960.2; AT1G20960.2; AT1G20960

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT1G20960

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

<p>This subsection of the <a href="http://www.uniprot.org/manual/cross_references_section">Cross-references</a> section provides links to various web resources that are relevant for a specific protein.<p><a href='/help/web_resource' target='_top'>More...</a></p>Web resourcesi

Seed defective Arabidopsis mutants

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC007369 Genomic DNA Translation: AAD30595.1
CP002684 Genomic DNA Translation: AEE30046.1
CP002684 Genomic DNA Translation: AEE30047.1
AF419583 mRNA Translation: AAL31915.1 Different initiation.
AY113040 mRNA Translation: AAM47348.1
AK221168 mRNA Translation: BAD95221.1
PIRiE86342
RefSeqiNP_001185050.1, NM_001198121.1
NP_173520.1, NM_101949.5

3D structure databases

SMRiQ9SYP1
ModBaseiSearch...

Protein-protein interaction databases

IntActiQ9SYP1, 5 interactors
MINTiQ9SYP1
STRINGi3702.AT1G20960.1

PTM databases

iPTMnetiQ9SYP1

Proteomic databases

PaxDbiQ9SYP1
PRIDEiQ9SYP1

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G20960.1; AT1G20960.1; AT1G20960
AT1G20960.2; AT1G20960.2; AT1G20960
GeneIDi838690
GrameneiAT1G20960.1; AT1G20960.1; AT1G20960
AT1G20960.2; AT1G20960.2; AT1G20960
KEGGiath:AT1G20960

Organism-specific databases

AraportiAT1G20960
TAIRilocus:2037375 AT1G20960

Phylogenomic databases

eggNOGiKOG0951 Eukaryota
COG1204 LUCA
HOGENOMiHOG000157749
InParanoidiQ9SYP1
KOiK12854
OMAiTLCKMID
OrthoDBi154891at2759
PhylomeDBiQ9SYP1

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q9SYP1

Gene expression databases

ExpressionAtlasiQ9SYP1 baseline and differential

Family and domain databases

Gene3Di2.60.40.150, 2 hits
InterProiView protein in InterPro
IPR003593 AAA+_ATPase
IPR041094 Brr2_helicase_PWI
IPR035892 C2_domain_sf
IPR011545 DEAD/DEAH_box_helicase_dom
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR014756 Ig_E-set
IPR027417 P-loop_NTPase
IPR004179 Sec63-dom
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00270 DEAD, 2 hits
PF00271 Helicase_C, 1 hit
PF18149 Helicase_PWI, 1 hit
PF02889 Sec63, 2 hits
SMARTiView protein in SMART
SM00382 AAA, 2 hits
SM00487 DEXDc, 2 hits
SM00490 HELICc, 2 hits
SM00973 Sec63, 2 hits
SUPFAMiSSF46785 SSF46785, 2 hits
SSF52540 SSF52540, 4 hits
SSF81296 SSF81296, 1 hit
PROSITEiView protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 2 hits
PS51194 HELICASE_CTER, 2 hits

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiDEXHC_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9SYP1
Secondary accession number(s): Q56Z02, Q8W577
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 20, 2016
Last sequence update: May 1, 2000
Last modified: September 18, 2019
This is version 146 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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