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Protein
Submitted name:

F15I1.1 protein

Gene

F15I1.1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • protein tag Source: GO_Central
  • ubiquitin protein ligase binding Source: GO_Central

GO - Biological processi

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...
Reactomei
R-ATH-110312 Translesion synthesis by REV1
R-ATH-110314 Recognition of DNA damage by PCNA-containing replication complex
R-ATH-110320 Translesion Synthesis by POLH
R-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-174184 Cdc20:Phospho-APC/C mediated degradation of Cyclin A
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-349425 Autodegradation of the E3 ubiquitin ligase COP1
R-ATH-382556 ABC-family proteins mediated transport
R-ATH-450302 activated TAK1 mediates p38 MAPK activation
R-ATH-450321 JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1
R-ATH-532668 N-glycan trimming in the ER and Calnexin/Calreticulin cycle
R-ATH-5358346 Hedgehog ligand biogenesis
R-ATH-5632684 Hedgehog 'on' state
R-ATH-5655862 Translesion synthesis by POLK
R-ATH-5656121 Translesion synthesis by POLI
R-ATH-5656169 Termination of translesion DNA synthesis
R-ATH-5687128 MAPK6/MAPK4 signaling
R-ATH-5689603 UCH proteinases
R-ATH-5689877 Josephin domain DUBs
R-ATH-5689880 Ub-specific processing proteases
R-ATH-5689901 Metalloprotease DUBs
R-ATH-5693565 Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks
R-ATH-5696394 DNA Damage Recognition in GG-NER
R-ATH-5696395 Formation of Incision Complex in GG-NER
R-ATH-5696397 Gap-filling DNA repair synthesis and ligation in GG-NER
R-ATH-5696400 Dual Incision in GG-NER
R-ATH-6781823 Formation of TC-NER Pre-Incision Complex
R-ATH-6782135 Dual incision in TC-NER
R-ATH-6782210 Gap-filling DNA repair synthesis and ligation in TC-NER
R-ATH-68949 Orc1 removal from chromatin
R-ATH-69017 CDK-mediated phosphorylation and removal of Cdc6
R-ATH-69229 Ubiquitin-dependent degradation of Cyclin D1
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-8866652 Synthesis of active ubiquitin: roles of E1 and E2 enzymes
R-ATH-901032 ER Quality Control Compartment (ERQC)
R-ATH-9020702 Interleukin-1 signaling
R-ATH-9033241 Peroxisomal protein import
R-ATH-917729 Endosomal Sorting Complex Required For Transport (ESCRT)
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)
R-ATH-983168 Antigen processing: Ubiquitination & Proteasome degradation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
F15I1.1 proteinImported
Submitted name:
Ubiquitin family proteinImported
Submitted name:
Ubiquitin-like superfamily proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:F15I1.1Imported
Ordered Locus Names:At1g53930Imported
ORF Names:T18A20.19Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT1G53930

The Arabidopsis Information Resource

More...
TAIRi
locus:2014440 AT1G53930

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q9SYE9 baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3702.AT1G53930.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q9SYE9

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini86 – 158Ubiquitin-likeInterPro annotationAdd BLAST73

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0001 Eukaryota
COG5272 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000233942

KEGG Orthology (KO)

More...
KOi
K08770

Identification of Orthologs from Complete Genome Data

More...
OMAi
MINLEVD

Database of Orthologous Groups

More...
OrthoDBi
EOG093618LJ

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR019956 Ubiquitin
IPR029071 Ubiquitin-like_domsf
IPR019954 Ubiquitin_CS
IPR000626 Ubiquitin_dom

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00240 ubiquitin, 1 hit

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR00348 UBIQUITIN

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00213 UBQ, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF54236 SSF54236, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00299 UBIQUITIN_1, 1 hit
PS50053 UBIQUITIN_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9SYE9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDGKTRINLE VDSSKTVNLK IDEDPTISQN IPPDILHGKV MHLSINTVDK
60 70 80 90 100
NTMINLEVDS SKTIDLNIGE NPTGGYNGPD FRHEVMFIFI KTLTGRRIVL
110 120 130 140 150
EVENCDTIEN IKAKIQDKQG IPVDQQRLIF KGKQLEDGLT LADYNIQNDS

ILHLIKRL
Length:158
Mass (Da):17,851
Last modified:May 1, 2000 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i0B207ED14883EBBA
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC006577 Genomic DNA Translation: AAD25765.1
DQ056497 mRNA Translation: AAY78654.1
CP002684 Genomic DNA Translation: AEE33026.1

Protein sequence database of the Protein Information Resource

More...
PIRi
F96579

NCBI Reference Sequences

More...
RefSeqi
NP_175796.1, NM_104271.2

UniGene gene-oriented nucleotide sequence clusters

More...
UniGenei
At.62377

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G53930.1; AT1G53930.1; AT1G53930

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
841831

Gramene; a comparative resource for plants

More...
Gramenei
AT1G53930.1; AT1G53930.1; AT1G53930

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT1G53930

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006577 Genomic DNA Translation: AAD25765.1
DQ056497 mRNA Translation: AAY78654.1
CP002684 Genomic DNA Translation: AEE33026.1
PIRiF96579
RefSeqiNP_175796.1, NM_104271.2
UniGeneiAt.62377

3D structure databases

SMRiQ9SYE9
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G53930.1

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G53930.1; AT1G53930.1; AT1G53930
GeneIDi841831
GrameneiAT1G53930.1; AT1G53930.1; AT1G53930
KEGGiath:AT1G53930

Organism-specific databases

AraportiAT1G53930
TAIRilocus:2014440 AT1G53930

Phylogenomic databases

eggNOGiKOG0001 Eukaryota
COG5272 LUCA
HOGENOMiHOG000233942
KOiK08770
OMAiMINLEVD
OrthoDBiEOG093618LJ

Enzyme and pathway databases

ReactomeiR-ATH-110312 Translesion synthesis by REV1
R-ATH-110314 Recognition of DNA damage by PCNA-containing replication complex
R-ATH-110320 Translesion Synthesis by POLH
R-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-174184 Cdc20:Phospho-APC/C mediated degradation of Cyclin A
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-349425 Autodegradation of the E3 ubiquitin ligase COP1
R-ATH-382556 ABC-family proteins mediated transport
R-ATH-450302 activated TAK1 mediates p38 MAPK activation
R-ATH-450321 JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1
R-ATH-532668 N-glycan trimming in the ER and Calnexin/Calreticulin cycle
R-ATH-5358346 Hedgehog ligand biogenesis
R-ATH-5632684 Hedgehog 'on' state
R-ATH-5655862 Translesion synthesis by POLK
R-ATH-5656121 Translesion synthesis by POLI
R-ATH-5656169 Termination of translesion DNA synthesis
R-ATH-5687128 MAPK6/MAPK4 signaling
R-ATH-5689603 UCH proteinases
R-ATH-5689877 Josephin domain DUBs
R-ATH-5689880 Ub-specific processing proteases
R-ATH-5689901 Metalloprotease DUBs
R-ATH-5693565 Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks
R-ATH-5696394 DNA Damage Recognition in GG-NER
R-ATH-5696395 Formation of Incision Complex in GG-NER
R-ATH-5696397 Gap-filling DNA repair synthesis and ligation in GG-NER
R-ATH-5696400 Dual Incision in GG-NER
R-ATH-6781823 Formation of TC-NER Pre-Incision Complex
R-ATH-6782135 Dual incision in TC-NER
R-ATH-6782210 Gap-filling DNA repair synthesis and ligation in TC-NER
R-ATH-68949 Orc1 removal from chromatin
R-ATH-69017 CDK-mediated phosphorylation and removal of Cdc6
R-ATH-69229 Ubiquitin-dependent degradation of Cyclin D1
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-8866652 Synthesis of active ubiquitin: roles of E1 and E2 enzymes
R-ATH-901032 ER Quality Control Compartment (ERQC)
R-ATH-9020702 Interleukin-1 signaling
R-ATH-9033241 Peroxisomal protein import
R-ATH-917729 Endosomal Sorting Complex Required For Transport (ESCRT)
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)
R-ATH-983168 Antigen processing: Ubiquitination & Proteasome degradation

Gene expression databases

ExpressionAtlasiQ9SYE9 baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR019956 Ubiquitin
IPR029071 Ubiquitin-like_domsf
IPR019954 Ubiquitin_CS
IPR000626 Ubiquitin_dom
PfamiView protein in Pfam
PF00240 ubiquitin, 1 hit
PRINTSiPR00348 UBIQUITIN
SMARTiView protein in SMART
SM00213 UBQ, 1 hit
SUPFAMiSSF54236 SSF54236, 1 hit
PROSITEiView protein in PROSITE
PS00299 UBIQUITIN_1, 1 hit
PS50053 UBIQUITIN_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ9SYE9_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9SYE9
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: November 7, 2018
This is version 116 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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