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Entry version 132 (13 Feb 2019)
Sequence version 1 (01 May 2000)
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Protein

NF-X1-type zinc finger protein NFXL1

Gene

NFXL1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H2O2 production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi).By similarity3 Publications

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section describes the metabolic pathway(s) associated with a protein.<p><a href='/help/pathway' target='_top'>More...</a></p>Pathwayi: protein ubiquitination

This protein is involved in the pathway protein ubiquitination, which is part of Protein modification.
View all proteins of this organism that are known to be involved in the pathway protein ubiquitination and in Protein modification.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Function’ section specifies the position(s) and type(s) of zinc fingers within the protein.<p><a href='/help/zn_fing' target='_top'>More...</a></p>Zinc fingeri223 – 279RING-type; degeneratePROSITE-ProRule annotationAdd BLAST57
Zinc fingeri335 – 353NF-X1-type 1Add BLAST19
Zinc fingeri390 – 409NF-X1-type 2Add BLAST20
Zinc fingeri454 – 473NF-X1-type 3Add BLAST20
Zinc fingeri513 – 532NF-X1-type 4Add BLAST20
Zinc fingeri572 – 607NF-X1-type 5Add BLAST36
Zinc fingeri611 – 630NF-X1-type 6Add BLAST20
Zinc fingeri668 – 686NF-X1-type 7Add BLAST19
Zinc fingeri721 – 751NF-X1-type 8Add BLAST31
Zinc fingeri760 – 781NF-X1-type 9Add BLAST22

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-binding, Transferase
Biological processPlant defense, Transcription, Transcription regulation, Ubl conjugation pathway
LigandMetal-binding, Zinc

Enzyme and pathway databases

UniPathway: a resource for the exploration and annotation of metabolic pathways

More...
UniPathwayi
UPA00143

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
NF-X1-type zinc finger protein NFXL1 (EC:2.3.2.-)
Short name:
AtNFXL1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:NFXL1
Ordered Locus Names:At1g10170
ORF Names:F14N23.5
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT1G10170

The Arabidopsis Information Resource

More...
TAIRi
locus:2012753 AT1G10170

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the ‘Pathology and Biotech’ section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Impaired growth and survival under salt stress. Reduced H2O2 production. Hypersensitivity to T-2 toxin and DAS (but not to DON), accompanied by enhanced SA accumulation and several plant defense gene induction. Less susceptible to Pst DC3000.3 Publications

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003968351 – 1188NF-X1-type zinc finger protein NFXL1Add BLAST1188

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9SY59

PRoteomics IDEntifications database

More...
PRIDEi
Q9SY59

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques.1 Publication

<p>This subsection of the ‘Expression’ section reports the experimentally proven effects of inducers and repressors (usually chemical compounds or environmental factors) on the level of protein (or mRNA) expression (up-regulation, down-regulation, constitutive expression).<p><a href='/help/induction' target='_top'>More...</a></p>Inductioni

By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON).3 Publications

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q9SY59 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q9SY59 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction_section%27">Interaction</a> section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="http://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated on a monthly basis. Each binary interaction is displayed on a separate line.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

WithEntry#Exp.IntActNotes
At2g29580Q9ZW363EBI-15201298,EBI-15195245

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
22795, 5 interactors

Protein interaction database and analysis system

More...
IntActi
Q9SY59, 5 interactors

STRING: functional protein association networks

More...
STRINGi
3702.AT1G10170.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
Q9SY59

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini894 – 963R3HAdd BLAST70

<p>This subsection of the ‘Family and domains’ section provides general information on the biological role of a domain. The term ‘domain’ is intended here in its wide acceptation, it may be a structural domain, a transmembrane region or a functional domain. Several domains are described in this subsection.<p><a href='/help/domain_cc' target='_top'>More...</a></p>Domaini

The RING-type zinc finger domain interacts with an ubiquitin-conjugating enzyme (E2) and facilitates ubiquitination.By similarity

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the NFX1 family.Curated

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri223 – 279RING-type; degeneratePROSITE-ProRule annotationAdd BLAST57
Zinc fingeri335 – 353NF-X1-type 1Add BLAST19
Zinc fingeri390 – 409NF-X1-type 2Add BLAST20
Zinc fingeri454 – 473NF-X1-type 3Add BLAST20
Zinc fingeri513 – 532NF-X1-type 4Add BLAST20
Zinc fingeri572 – 607NF-X1-type 5Add BLAST36
Zinc fingeri611 – 630NF-X1-type 6Add BLAST20
Zinc fingeri668 – 686NF-X1-type 7Add BLAST19
Zinc fingeri721 – 751NF-X1-type 8Add BLAST31
Zinc fingeri760 – 781NF-X1-type 9Add BLAST22

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG1952 Eukaryota
ENOG410XR02 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000030687

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q9SY59

KEGG Orthology (KO)

More...
KOi
K12236

Identification of Orthologs from Complete Genome Data

More...
OMAi
HPCEHPP

Database of Orthologous Groups

More...
OrthoDBi
299100at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9SY59

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR034078 NFX1_fam
IPR019786 Zinc_finger_PHD-type_CS
IPR000967 Znf_NFX1
IPR019787 Znf_PHD-finger
IPR001841 Znf_RING

The PANTHER Classification System

More...
PANTHERi
PTHR12360 PTHR12360, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01422 zf-NF-X1, 9 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00438 ZnF_NFX, 9 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS01359 ZF_PHD_1, 1 hit
PS50016 ZF_PHD_2, 1 hit
PS50089 ZF_RING_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

Q9SY59-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSFQVRRDRS DDRSHRFNHQ QTWIPRNSST SSVVVNEPLL PPNTDRNSET
60 70 80 90 100
LDAGSASRPV YLQRQHNASG PPSYNHHQRS SNIGPPPPNQ HRRYNAPDNQ
110 120 130 140 150
HQRSDNIGPP QPNQHRRYNA PDNQHQRSDN SGPPQPYRHR RNNAPENQHQ
160 170 180 190 200
RSDNIGPPPP NRQRRNNASG TLPDNRQRVA SRTRPVNQGK RVAKEENVVL
210 220 230 240 250
TDPNLPQLVQ ELQEKLVKSS IECMICYDKV GRSANIWSCS SCYSIFHINC
260 270 280 290 300
IKRWARAPTS VDLLAEKNQG DNWRCPGCQS VQLTSSKEIS YRCFCGKRRD
310 320 330 340 350
PPSDPYLTPH SCGEPCGKPL EKEFAPAETT EEDLCPHVCV LQCHPGPCPP
360 370 380 390 400
CKAFAPPRSC PCGKKMVTTR CSERRSDLVC GQRCDKLLSC GRHQCERTCH
410 420 430 440 450
VGPCDPCQVL VNATCFCKKK VETVICGDMN VKGELKAEDG VYSCSFNCGK
460 470 480 490 500
PLGCGNHFCS EVCHPGPCGD CDLLPSRVKT CYCGNTRLEE QIRQSCLDPI
510 520 530 540 550
PSCSNVCRKL LPCRLHTCNE MCHAGDCPPC LVQVNQKCRC GSTSRAVECY
560 570 580 590 600
ITTSSEAEKF VCAKPCGRKK NCGRHRCSER CCPLLNGKKN DLSGDWDPHV
610 620 630 640 650
CQIPCQKKLR CGQHSCESLC HSGHCPPCLE MIFTDLTCAC GRTSIPPPLS
660 670 680 690 700
CGTPVPSCQL PCPIPQPCGH SDTHGCHFGD CPPCSTPVEK KCVGGHVVLR
710 720 730 740 750
NIPCGLKDIR CTKICGKTRR CGMHACARTC HPEPCDSFNE SEAGMRVTCR
760 770 780 790 800
QKCGAPRTDC RHTCAALCHP SAPCPDLRCE FSVTITCSCG RITATVPCDA
810 820 830 840 850
GGRSANGSNV YCAAYDEASV LQKLPAPLQP VESSGNRIPL GQRKLSCDDE
860 870 880 890 900
CAKLERKRVL QDAFDITPPN LEALHFSENS AMTEIISDLY RRDPKWVLAV
910 920 930 940 950
EERCKFLVLG KARGSTSALK VHIFCPMQKD KRDTVRLIAE RWKLGVSNAG
960 970 980 990 1000
WEPKRFTVVH VTAKSKPPTR IIGARGGAIS IGGPHPPFYD SLVDMDPGLV
1010 1020 1030 1040 1050
VSFLDLPREA NISALVLRFG GECELVWLND KNALAVFHDH ARAATAMRRL
1060 1070 1080 1090 1100
EHGSVYHGAV VVQSGGQSPS LNNVWGKLPG SSAWDVDKGN PWRRAVIQES
1110 1120 1130 1140 1150
DDSWGAEDSP IGGSSTDAQA SALRSAKSNS PIVTSVNRWS VLEPKKASTS
1160 1170 1180
TLEPIAQIEE SSSSKTTGKQ PVEGSGEEVV DDWEKVCE
Length:1,188
Mass (Da):130,716
Last modified:May 1, 2000 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i906B703583E8FFCA
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1P8AVY4A0A1P8AVY4_ARATH
NF-X-like 1
NFXL1 ATNFXL1, NF-X-like 1, At1g10170, F14N23.5, F14N23_5
1,116Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1P8AVZ2A0A1P8AVZ2_ARATH
NF-X-like 1
NFXL1 ATNFXL1, NF-X-like 1, At1g10170, F14N23.5, F14N23_5
1,209Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC005489 Genomic DNA Translation: AAD32867.1
CP002684 Genomic DNA Translation: AEE28549.1
CP002684 Genomic DNA Translation: ANM60817.1

Protein sequence database of the Protein Information Resource

More...
PIRi
D86236

NCBI Reference Sequences

More...
RefSeqi
NP_001318968.1, NM_001331888.1
NP_172488.1, NM_100891.3

UniGene gene-oriented nucleotide sequence clusters

More...
UniGenei
At.25390

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G10170.1; AT1G10170.1; AT1G10170
AT1G10170.3; AT1G10170.3; AT1G10170

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
837555

Gramene; a comparative resource for plants

More...
Gramenei
AT1G10170.1; AT1G10170.1; AT1G10170
AT1G10170.3; AT1G10170.3; AT1G10170

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT1G10170

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005489 Genomic DNA Translation: AAD32867.1
CP002684 Genomic DNA Translation: AEE28549.1
CP002684 Genomic DNA Translation: ANM60817.1
PIRiD86236
RefSeqiNP_001318968.1, NM_001331888.1
NP_172488.1, NM_100891.3
UniGeneiAt.25390

3D structure databases

ProteinModelPortaliQ9SY59
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi22795, 5 interactors
IntActiQ9SY59, 5 interactors
STRINGi3702.AT1G10170.1

Proteomic databases

PaxDbiQ9SY59
PRIDEiQ9SY59

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G10170.1; AT1G10170.1; AT1G10170
AT1G10170.3; AT1G10170.3; AT1G10170
GeneIDi837555
GrameneiAT1G10170.1; AT1G10170.1; AT1G10170
AT1G10170.3; AT1G10170.3; AT1G10170
KEGGiath:AT1G10170

Organism-specific databases

AraportiAT1G10170
TAIRilocus:2012753 AT1G10170

Phylogenomic databases

eggNOGiKOG1952 Eukaryota
ENOG410XR02 LUCA
HOGENOMiHOG000030687
InParanoidiQ9SY59
KOiK12236
OMAiHPCEHPP
OrthoDBi299100at2759
PhylomeDBiQ9SY59

Enzyme and pathway databases

UniPathwayi
UPA00143

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q9SY59

Gene expression databases

ExpressionAtlasiQ9SY59 baseline and differential
GenevisibleiQ9SY59 AT

Family and domain databases

InterProiView protein in InterPro
IPR034078 NFX1_fam
IPR019786 Zinc_finger_PHD-type_CS
IPR000967 Znf_NFX1
IPR019787 Znf_PHD-finger
IPR001841 Znf_RING
PANTHERiPTHR12360 PTHR12360, 1 hit
PfamiView protein in Pfam
PF01422 zf-NF-X1, 9 hits
SMARTiView protein in SMART
SM00438 ZnF_NFX, 9 hits
PROSITEiView protein in PROSITE
PS01359 ZF_PHD_1, 1 hit
PS50016 ZF_PHD_2, 1 hit
PS50089 ZF_RING_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiNFXL1_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9SY59
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 10, 2010
Last sequence update: May 1, 2000
Last modified: February 13, 2019
This is version 132 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  3. PATHWAY comments
    Index of metabolic and biosynthesis pathways
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