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Protein

Pentatricopeptide repeat-containing protein At1g62670, mitochondrial

Gene

At1g62670

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

  • endonuclease activity Source: GO_Central
  • RNA binding Source: TAIR

GO - Biological processi

  • mitochondrial mRNA modification Source: GO_Central
  • mRNA processing Source: GO_Central
  • RNA 5'-end processing Source: TAIR

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At1g62670, mitochondrial
Gene namesi
Ordered Locus Names:At1g62670
ORF Names:F23N19.4, T3P18.22
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G62670
TAIRilocus:2026192 AT1G62670

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 22MitochondrionSequence analysisAdd BLAST22
ChainiPRO_000034283223 – 630Pentatricopeptide repeat-containing protein At1g62670, mitochondrialAdd BLAST608

Proteomic databases

PaxDbiQ9SXD1

Expressioni

Gene expression databases

ExpressionAtlasiQ9SXD1 baseline and differential
GenevisibleiQ9SXD1 AT

Interactioni

Protein-protein interaction databases

BioGridi27785, 1 interactor
STRINGi3702.AT1G62670.1

Structurei

3D structure databases

ProteinModelPortaliQ9SXD1
SMRiQ9SXD1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati44 – 79PPR 1Add BLAST36
Repeati80 – 114PPR 2Add BLAST35
Repeati115 – 149PPR 3Add BLAST35
Repeati150 – 184PPR 4Add BLAST35
Repeati185 – 219PPR 5Add BLAST35
Repeati220 – 254PPR 6Add BLAST35
Repeati255 – 289PPR 7Add BLAST35
Repeati290 – 324PPR 8Add BLAST35
Repeati325 – 359PPR 9Add BLAST35
Repeati360 – 394PPR 10Add BLAST35
Repeati395 – 429PPR 11Add BLAST35
Repeati430 – 464PPR 12Add BLAST35
Repeati465 – 499PPR 13Add BLAST35
Repeati500 – 534PPR 14Add BLAST35
Repeati535 – 569PPR 15Add BLAST35
Repeati570 – 604PPR 16Add BLAST35

Sequence similaritiesi

Belongs to the PPR family. P subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000015176
InParanoidiQ9SXD1
OMAiCHENRSQ
OrthoDBiEOG093606HI
PhylomeDBiQ9SXD1

Family and domain databases

Gene3Di1.25.40.10, 7 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF12854 PPR_1, 1 hit
PF13041 PPR_2, 7 hits
TIGRFAMsiTIGR00756 PPR, 14 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 16 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9SXD1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE
60 70 80 90 100
KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
110 120 130 140 150
ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN
160 170 180 190 200
IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
210 220 230 240 250
KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG
260 270 280 290 300
KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
310 320 330 340 350
LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD
360 370 380 390 400
EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
410 420 430 440 450
TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA
460 470 480 490 500
QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
510 520 530 540 550
IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG
560 570 580 590 600
SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
610 620 630
GFAGDASTIG LVTNMLHDGR LDKSFLDMLS
Length:630
Mass (Da):70,846
Last modified:July 1, 2008 - v2
Checksum:i440298C15B6B7DFB
GO

Sequence cautioni

The sequence AAD43623 differs from that shown. Reason: Erroneous initiation.Curated
The sequence AAF19552 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene has been split into 2 genes: At1g62670 and At1g62680.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005698 Genomic DNA Translation: AAD43623.1 Different initiation.
AC007190 Genomic DNA Translation: AAF19552.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE33992.1
CP002684 Genomic DNA Translation: ANM59187.1
RefSeqiNP_001319294.1, NM_001334047.1
NP_176454.1, NM_104944.1
UniGeneiAt.65045

Genome annotation databases

EnsemblPlantsiAT1G62670.1; AT1G62670.1; AT1G62670
AT1G62670.2; AT1G62670.2; AT1G62670
GeneIDi842564
GrameneiAT1G62670.1; AT1G62670.1; AT1G62670
AT1G62670.2; AT1G62670.2; AT1G62670
KEGGiath:AT1G62670

Similar proteinsi

Entry informationi

Entry nameiPPR91_ARATH
AccessioniPrimary (citable) accession number: Q9SXD1
Secondary accession number(s): Q9SI82
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: July 1, 2008
Last modified: April 25, 2018
This is version 94 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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