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Protein

Pentatricopeptide repeat-containing protein At4g30700

Gene

DYW9

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • cytidine to uridine editing Source: TAIR
  • mitochondrial mRNA modification Source: TAIR
  • mitochondrial RNA processing Source: TAIR

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At4g30700
Alternative name(s):
Protein DYW9
Gene namesi
Name:DYW9
Synonyms:PCMP-H9
Ordered Locus Names:At4g30700
ORF Names:T10C21.50
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G30700
TAIRilocus:2131939 AT4G30700

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003634581 – 792Pentatricopeptide repeat-containing protein At4g30700Add BLAST792

Proteomic databases

PaxDbiQ9SUH6
PRIDEiQ9SUH6

PTM databases

iPTMnetiQ9SUH6

Expressioni

Gene expression databases

ExpressionAtlasiQ9SUH6 baseline and differential
GenevisibleiQ9SUH6 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G30700.1

Structurei

3D structure databases

ProteinModelPortaliQ9SUH6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati51 – 81PPR 1Add BLAST31
Repeati82 – 117PPR 2Add BLAST36
Repeati118 – 152PPR 3Add BLAST35
Repeati153 – 183PPR 4Add BLAST31
Repeati184 – 218PPR 5Add BLAST35
Repeati220 – 254PPR 6Add BLAST35
Repeati255 – 285PPR 7Add BLAST31
Repeati286 – 320PPR 8Add BLAST35
Repeati321 – 352PPR 9Add BLAST32
Repeati353 – 383PPR 10Add BLAST31
Repeati384 – 418PPR 11Add BLAST35
Repeati419 – 453PPR 12Add BLAST35
Repeati454 – 484PPR 13Add BLAST31
Repeati485 – 519PPR 14Add BLAST35
Repeati520 – 555PPR 15Add BLAST36
Repeati556 – 586PPR 16Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni591 – 666Type E motifAdd BLAST76
Regioni667 – 697Type E(+) motifAdd BLAST31
Regioni698 – 792Type DYW motifAdd BLAST95

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi713 – 718Poly-Glu6

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiQ9SUH6
OMAiHTSKKQY
OrthoDBiEOG093604D2
PhylomeDBiQ9SUH6

Family and domain databases

Gene3Di1.25.40.10, 4 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 3 hits
PF13041 PPR_2, 2 hits
SUPFAMiSSF48452 SSF48452, 2 hits
TIGRFAMsiTIGR00756 PPR, 5 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 12 hits

Sequencei

Sequence statusi: Complete.

Q9SUH6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLLRTVSSAT AETTAALISK NTYLDFFKRS TSISHLAQTH AQIILHGFRN
60 70 80 90 100
DISLLTKLTQ RLSDLGAIYY ARDIFLSVQR PDVFLFNVLM RGFSVNESPH
110 120 130 140 150
SSLSVFAHLR KSTDLKPNSS TYAFAISAAS GFRDDRAGRV IHGQAVVDGC
160 170 180 190 200
DSELLLGSNI VKMYFKFWRV EDARKVFDRM PEKDTILWNT MISGYRKNEM
210 220 230 240 250
YVESIQVFRD LINESCTRLD TTTLLDILPA VAELQELRLG MQIHSLATKT
260 270 280 290 300
GCYSHDYVLT GFISLYSKCG KIKMGSALFR EFRKPDIVAY NAMIHGYTSN
310 320 330 340 350
GETELSLSLF KELMLSGARL RSSTLVSLVP VSGHLMLIYA IHGYCLKSNF
360 370 380 390 400
LSHASVSTAL TTVYSKLNEI ESARKLFDES PEKSLPSWNA MISGYTQNGL
410 420 430 440 450
TEDAISLFRE MQKSEFSPNP VTITCILSAC AQLGALSLGK WVHDLVRSTD
460 470 480 490 500
FESSIYVSTA LIGMYAKCGS IAEARRLFDL MTKKNEVTWN TMISGYGLHG
510 520 530 540 550
QGQEALNIFY EMLNSGITPT PVTFLCVLYA CSHAGLVKEG DEIFNSMIHR
560 570 580 590 600
YGFEPSVKHY ACMVDILGRA GHLQRALQFI EAMSIEPGSS VWETLLGACR
610 620 630 640 650
IHKDTNLART VSEKLFELDP DNVGYHVLLS NIHSADRNYP QAATVRQTAK
660 670 680 690 700
KRKLAKAPGY TLIEIGETPH VFTSGDQSHP QVKEIYEKLE KLEGKMREAG
710 720 730 740 750
YQPETELALH DVEEEERELM VKVHSERLAI AFGLIATEPG TEIRIIKNLR
760 770 780 790
VCLDCHTVTK LISKITERVI VVRDANRFHH FKDGVCSCGD YW
Length:792
Mass (Da):88,777
Last modified:May 1, 2000 - v1
Checksum:i02A3A882A5B17290
GO

Sequence cautioni

The sequence BX828159 differs from that shown. Sequencing errors.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL109787 Genomic DNA Translation: CAB52443.1
AL161577 Genomic DNA Translation: CAB79788.1
CP002687 Genomic DNA Translation: AEE85798.1
BX828159 mRNA No translation available.
AJ006042 mRNA Translation: CAA06831.1
PIRiC85359
T52645
RefSeqiNP_194799.1, NM_119216.5
UniGeneiAt.65435

Genome annotation databases

EnsemblPlantsiAT4G30700.1; AT4G30700.1; AT4G30700
GeneIDi829193
GrameneiAT4G30700.1; AT4G30700.1; AT4G30700
KEGGiath:AT4G30700

Similar proteinsi

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL109787 Genomic DNA Translation: CAB52443.1
AL161577 Genomic DNA Translation: CAB79788.1
CP002687 Genomic DNA Translation: AEE85798.1
BX828159 mRNA No translation available.
AJ006042 mRNA Translation: CAA06831.1
PIRiC85359
T52645
RefSeqiNP_194799.1, NM_119216.5
UniGeneiAt.65435

3D structure databases

ProteinModelPortaliQ9SUH6
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT4G30700.1

PTM databases

iPTMnetiQ9SUH6

Proteomic databases

PaxDbiQ9SUH6
PRIDEiQ9SUH6

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G30700.1; AT4G30700.1; AT4G30700
GeneIDi829193
GrameneiAT4G30700.1; AT4G30700.1; AT4G30700
KEGGiath:AT4G30700

Organism-specific databases

AraportiAT4G30700
TAIRilocus:2131939 AT4G30700

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiQ9SUH6
OMAiHTSKKQY
OrthoDBiEOG093604D2
PhylomeDBiQ9SUH6

Miscellaneous databases

PROiPR:Q9SUH6

Gene expression databases

ExpressionAtlasiQ9SUH6 baseline and differential
GenevisibleiQ9SUH6 AT

Family and domain databases

Gene3Di1.25.40.10, 4 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 3 hits
PF13041 PPR_2, 2 hits
SUPFAMiSSF48452 SSF48452, 2 hits
TIGRFAMsiTIGR00756 PPR, 5 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 12 hits
ProtoNetiSearch...

Entry informationi

Entry nameiPP341_ARATH
AccessioniPrimary (citable) accession number: Q9SUH6
Secondary accession number(s): Q9M4P4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: May 1, 2000
Last modified: May 23, 2018
This is version 107 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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