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Protein

U-box domain-containing protein 39

Gene

PUB39

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Functions as an E3 ubiquitin ligase.By similarity

Catalytic activityi

S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N6-ubiquitinyl-[acceptor protein]-L-lysine.

Pathwayi: protein ubiquitination

This protein is involved in the pathway protein ubiquitination, which is part of Protein modification.
View all proteins of this organism that are known to be involved in the pathway protein ubiquitination and in Protein modification.

GO - Molecular functioni

Keywordsi

Molecular functionTransferase
Biological processUbl conjugation pathway

Enzyme and pathway databases

UniPathwayi
UPA00143

Names & Taxonomyi

Protein namesi
Recommended name:
U-box domain-containing protein 39 (EC:2.3.2.27)
Alternative name(s):
Plant U-box protein 39
RING-type E3 ubiquitin transferase PUB39Curated
Gene namesi
Name:PUB39
Ordered Locus Names:At3g47820
ORF Names:T23J7.150
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G47820
TAIRilocus:2100372 AT3G47820

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003221791 – 531U-box domain-containing protein 39Add BLAST531

Proteomic databases

PaxDbiQ9STT1

Expressioni

Gene expression databases

ExpressionAtlasiQ9STT1 baseline and differential

Structurei

3D structure databases

ProteinModelPortaliQ9STT1
SMRiQ9STT1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini31 – 105U-boxPROSITE-ProRule annotationAdd BLAST75
Repeati237 – 276ARM 1Sequence analysisAdd BLAST40
Repeati278 – 317ARM 2Sequence analysisAdd BLAST40
Repeati319 – 359ARM 3Sequence analysisAdd BLAST41
Repeati361 – 401ARM 4Sequence analysisAdd BLAST41
Repeati403 – 444ARM 5Sequence analysisAdd BLAST42
Repeati447 – 488ARM 6Sequence analysisAdd BLAST42

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi147 – 199Ser-richPROSITE-ProRule annotationAdd BLAST53

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG410IIQV Eukaryota
ENOG4111IM2 LUCA
HOGENOMiHOG000239874
InParanoidiQ9STT1
OMAiFHHHRSA
OrthoDBiEOG09360BV3
PhylomeDBiQ9STT1

Family and domain databases

Gene3Di1.25.10.10, 2 hits
3.30.40.10, 1 hit
InterProiView protein in InterPro
IPR011989 ARM-like
IPR016024 ARM-type_fold
IPR000225 Armadillo
IPR003613 Ubox_domain
IPR013083 Znf_RING/FYVE/PHD
PfamiView protein in Pfam
PF00514 Arm, 2 hits
PF04564 U-box, 1 hit
SMARTiView protein in SMART
SM00185 ARM, 4 hits
SM00504 Ubox, 1 hit
SUPFAMiSSF48371 SSF48371, 1 hit
PROSITEiView protein in PROSITE
PS50176 ARM_REPEAT, 1 hit
PS51698 U_BOX, 1 hit

Sequencei

Sequence statusi: Complete.

Q9STT1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGDTGRHKWF SFHHHRSASA TTMPQHNSPG ETPTEFLCPI TGFLMSDPVV
60 70 80 90 100
VASGQTFERI SVQVCRNLSF APKLHDGTQP DLSTVIPNLA MKSTILSWCD
110 120 130 140 150
RNKMEHPRPP DYAYVEGVVR TRMDSLPPGS GHRIAKSEIL PPVAENSNSN
160 170 180 190 200
SDYDSVMGAI RSRSRTSLSS TTSLPLHQTR PINHSTRIQS SFSTSDYSSF
210 220 230 240 250
PPMSPEEEEI YNKLTSVDTI DHEQGLIQLR KTTRSNETTR ISLCTDRILS
260 270 280 290 300
LLRSLIVSRY NIVQTNAAAS IVNLSLEKPN KLKIVRSGFV PLLIDVLKSG
310 320 330 340 350
STEAQEHVIG ALFSLAVEEE NKMVIGVLGA VEPLLHALRS SESERARQDA
360 370 380 390 400
ALALYHLSLI PNNRSRLVKA GAVPMMLSMI RSGESASRIL LLLCNLAACS
410 420 430 440 450
EGKGAMLDGN AVSILVGKLR ESGGAESDAA ARENCVGALL TLSVGNMRFR
460 470 480 490 500
GLASEAGAEE ILTEIVESES GSGRLKEKAS KILQTLRGGG SEFGEGAEAR
510 520 530
EWNRMLEASG LSRSQFQQGG QKGGFAYSSQ F
Length:531
Mass (Da):57,638
Last modified:January 31, 2018 - v2
Checksum:iCCB13B15CFF8888D
GO

Sequence cautioni

The sequence CAB41865 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL049746 Genomic DNA Translation: CAB41865.1 Different initiation.
CP002686 Genomic DNA Translation: AEE78334.2
AY091018 mRNA Translation: AAM14040.1
BT020355 mRNA Translation: AAV85710.1
PIRiT07721
RefSeqiNP_190366.2, NM_114650.3
UniGeneiAt.35768

Genome annotation databases

EnsemblPlantsiAT3G47820.1; AT3G47820.1; AT3G47820
GeneIDi823936
GrameneiAT3G47820.1; AT3G47820.1; AT3G47820
KEGGiath:AT3G47820

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL049746 Genomic DNA Translation: CAB41865.1 Different initiation.
CP002686 Genomic DNA Translation: AEE78334.2
AY091018 mRNA Translation: AAM14040.1
BT020355 mRNA Translation: AAV85710.1
PIRiT07721
RefSeqiNP_190366.2, NM_114650.3
UniGeneiAt.35768

3D structure databases

ProteinModelPortaliQ9STT1
SMRiQ9STT1
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PaxDbiQ9STT1

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G47820.1; AT3G47820.1; AT3G47820
GeneIDi823936
GrameneiAT3G47820.1; AT3G47820.1; AT3G47820
KEGGiath:AT3G47820

Organism-specific databases

AraportiAT3G47820
TAIRilocus:2100372 AT3G47820

Phylogenomic databases

eggNOGiENOG410IIQV Eukaryota
ENOG4111IM2 LUCA
HOGENOMiHOG000239874
InParanoidiQ9STT1
OMAiFHHHRSA
OrthoDBiEOG09360BV3
PhylomeDBiQ9STT1

Enzyme and pathway databases

UniPathwayi
UPA00143

Miscellaneous databases

PROiPR:Q9STT1

Gene expression databases

ExpressionAtlasiQ9STT1 baseline and differential

Family and domain databases

Gene3Di1.25.10.10, 2 hits
3.30.40.10, 1 hit
InterProiView protein in InterPro
IPR011989 ARM-like
IPR016024 ARM-type_fold
IPR000225 Armadillo
IPR003613 Ubox_domain
IPR013083 Znf_RING/FYVE/PHD
PfamiView protein in Pfam
PF00514 Arm, 2 hits
PF04564 U-box, 1 hit
SMARTiView protein in SMART
SM00185 ARM, 4 hits
SM00504 Ubox, 1 hit
SUPFAMiSSF48371 SSF48371, 1 hit
PROSITEiView protein in PROSITE
PS50176 ARM_REPEAT, 1 hit
PS51698 U_BOX, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiPUB39_ARATH
AccessioniPrimary (citable) accession number: Q9STT1
Secondary accession number(s): Q8RWZ2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 26, 2008
Last sequence update: January 31, 2018
Last modified: November 7, 2018
This is version 121 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
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Main funding by: National Institutes of Health

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