UniProtKB - Q9STF9 (THA8L_ARATH)
Protein
Protein THYLAKOID ASSEMBLY 8-like, chloroplastic
Gene
THA8L
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Functioni
Binds weakly to specific single strand RNA (ssRNA).1 Publication
GO - Molecular functioni
- sequence-specific mRNA binding Source: UniProtKB
- single-stranded RNA binding Source: UniProtKB
- zinc ion binding Source: TAIR
Keywordsi
Molecular function | RNA-binding |
Names & Taxonomyi
Protein namesi | Recommended name: Protein THYLAKOID ASSEMBLY 8-like, chloroplastic1 PublicationShort name: AtTHA8L1 Publication |
Gene namesi | Name:THA8L1 Publication Ordered Locus Names:At3g46870Imported ORF Names:T6H20.100Imported |
Organismi | Arabidopsis thaliana (Mouse-ear cress) |
Taxonomic identifieri | 3702 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Proteomesi |
|
Organism-specific databases
Araporti | AT3G46870 |
TAIRi | locus:2102832, AT3G46870 |
Subcellular locationi
Chloroplast
- chloroplast Sequence analysis
Chloroplast
- chloroplast Source: UniProtKB-SubCell
Keywords - Cellular componenti
Chloroplast, PlastidPathology & Biotechi
Mutagenesis
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Mutagenesisi | 75 | K → E: Abolished RNA binding. 1 Publication | 1 | |
Mutagenesisi | 86 | R → E: Reduced RNA binding. 1 Publication | 1 | |
Mutagenesisi | 93 | K → E: Reduced RNA binding. 1 Publication | 1 | |
Mutagenesisi | 96 | K → E: Reduced RNA binding. 1 Publication | 1 | |
Mutagenesisi | 104 | R → E: Abolished RNA binding. 1 Publication | 1 | |
Mutagenesisi | 119 | R → E: Abolished RNA binding. 1 Publication | 1 | |
Mutagenesisi | 155 | K → E: Abolished RNA binding. 1 Publication | 1 | |
Mutagenesisi | 157 | K → E: Reduced RNA binding. 1 Publication | 1 | |
Mutagenesisi | 158 | R → E: Reduced RNA binding. 1 Publication | 1 | |
Mutagenesisi | 186 | R → E: Reduced RNA binding. 1 Publication | 1 | |
Mutagenesisi | 190 | R → E: Reduced RNA binding. 1 Publication | 1 | |
Mutagenesisi | 206 | K → E: Reduced RNA binding. 1 Publication | 1 | |
Mutagenesisi | 217 | R → E: Reduced RNA binding. 1 Publication | 1 | |
Mutagenesisi | 221 | K → E: Reduced RNA binding. 1 Publication | 1 |
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Transit peptidei | 1 – 55 | ChloroplastSequence analysisAdd BLAST | 55 | |
ChainiPRO_0000356125 | 56 – 257 | Protein THYLAKOID ASSEMBLY 8-like, chloroplasticAdd BLAST | 202 |
Proteomic databases
PaxDbi | Q9STF9 |
PRIDEi | Q9STF9 |
ProteomicsDBi | 234343 |
Structurei
Secondary structure
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details3D structure databases
SMRi | Q9STF9 |
ModBasei | Search... |
PDBe-KBi | Search... |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Repeati | 142 – 176 | PPR 1PROSITE-ProRule annotationAdd BLAST | 35 | |
Repeati | 177 – 211 | PPR 2PROSITE-ProRule annotationAdd BLAST | 35 |
Sequence similaritiesi
Keywords - Domaini
Repeat, Transit peptidePhylogenomic databases
eggNOGi | ENOG502QPMB, Eukaryota |
HOGENOMi | CLU_077248_1_0_1 |
InParanoidi | Q9STF9 |
PhylomeDBi | Q9STF9 |
Family and domain databases
Gene3Di | 1.25.40.10, 1 hit |
InterProi | View protein in InterPro IPR002885, Pentatricopeptide_repeat IPR011990, TPR-like_helical_dom_sf |
Pfami | View protein in Pfam PF13041, PPR_2, 1 hit |
TIGRFAMsi | TIGR00756, PPR, 2 hits |
PROSITEi | View protein in PROSITE PS51375, PPR, 2 hits |
(1+)i Sequence
Sequence statusi: Complete.
: The displayed sequence is further processed into a mature form. Sequence processingi
This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All
Q9STF9-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MTAIRVCSRK FPTFASIFFQ NITRNPSIHR ISFSNLKPKT LLHPIPPKPF
60 70 80 90 100
TVFVSRFHDG RPRGPLWRGK KLIGKEALFV ILGLKRLKED DEKLDKFIKT
110 120 130 140 150
HVFRLLKLDM LAVIGELERQ EETALAIKMF EVIQKQEWYQ PDVFMYKDLI
160 170 180 190 200
VSLAKSKRMD EAMALWEKMK KENLFPDSQT YTEVIRGFLR DGCPADAMNV
210 220 230 240 250
YEDMLKSPDP PEELPFRVLL KGLLPHPLLR NKVKKDFEEL FPEKHAYDPP
EEIFGRC
Computationally mapped potential isoform sequencesi
There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basketA0A1I9LSM9 | A0A1I9LSM9_ARATH | Pentatricopeptide repeat (PPR) supe... | At3g46870 | 269 | Annotation score: |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AL096859 Genomic DNA Translation: CAB51178.1 CP002686 Genomic DNA Translation: AEE78213.1 AK117833 mRNA Translation: BAC42475.1 BT005267 mRNA Translation: AAO63331.1 |
PIRi | T12961 |
RefSeqi | NP_190271.1, NM_114554.4 |
Genome annotation databases
EnsemblPlantsi | AT3G46870.1; AT3G46870.1; AT3G46870 |
GeneIDi | 823840 |
Gramenei | AT3G46870.1; AT3G46870.1; AT3G46870 |
KEGGi | ath:AT3G46870 |
Similar proteinsi
Cross-referencesi
Web resourcesi
Pentatricopeptide repeat proteins |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AL096859 Genomic DNA Translation: CAB51178.1 CP002686 Genomic DNA Translation: AEE78213.1 AK117833 mRNA Translation: BAC42475.1 BT005267 mRNA Translation: AAO63331.1 |
PIRi | T12961 |
RefSeqi | NP_190271.1, NM_114554.4 |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
4LEU | X-ray | 2.00 | A | 1-257 | [»] | |
SMRi | Q9STF9 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Protein-protein interaction databases
DIPi | DIP-60556N |
STRINGi | 3702.AT3G46870.1 |
Proteomic databases
PaxDbi | Q9STF9 |
PRIDEi | Q9STF9 |
ProteomicsDBi | 234343 |
Genome annotation databases
EnsemblPlantsi | AT3G46870.1; AT3G46870.1; AT3G46870 |
GeneIDi | 823840 |
Gramenei | AT3G46870.1; AT3G46870.1; AT3G46870 |
KEGGi | ath:AT3G46870 |
Organism-specific databases
Araporti | AT3G46870 |
TAIRi | locus:2102832, AT3G46870 |
Phylogenomic databases
eggNOGi | ENOG502QPMB, Eukaryota |
HOGENOMi | CLU_077248_1_0_1 |
InParanoidi | Q9STF9 |
PhylomeDBi | Q9STF9 |
Miscellaneous databases
PROi | PR:Q9STF9 |
Gene expression databases
ExpressionAtlasi | Q9STF9, baseline and differential |
Family and domain databases
Gene3Di | 1.25.40.10, 1 hit |
InterProi | View protein in InterPro IPR002885, Pentatricopeptide_repeat IPR011990, TPR-like_helical_dom_sf |
Pfami | View protein in Pfam PF13041, PPR_2, 1 hit |
TIGRFAMsi | TIGR00756, PPR, 2 hits |
PROSITEi | View protein in PROSITE PS51375, PPR, 2 hits |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | THA8L_ARATH | |
Accessioni | Q9STF9Primary (citable) accession number: Q9STF9 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | December 16, 2008 |
Last sequence update: | May 1, 2000 | |
Last modified: | August 12, 2020 | |
This is version 94 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Plant Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
3D-structure, Reference proteomeDocuments
- Arabidopsis thaliana
Arabidopsis thaliana: entries and gene names - PDB cross-references
Index of Protein Data Bank (PDB) cross-references - SIMILARITY comments
Index of protein domains and families