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Protein

Pentatricopeptide repeat-containing protein At3g46790, chloroplastic

Gene

CRR2

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Required for the intergenic processing between chloroplast rsp7 and ndhB transcripts.1 Publication

GO - Molecular functioni

GO - Biological processi

  • chloroplast RNA processing Source: TAIR
  • polycistronic mRNA processing Source: TAIR
  • RNA modification Source: GO_Central

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At3g46790, chloroplastic
Alternative name(s):
Protein CHLORORESPIRATORY REDUCTION 2
Gene namesi
Name:CRR2
Synonyms:PCMP-H54
Ordered Locus Names:At3g46790
ORF Names:T6H20.180
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G46790
TAIRilocus:2102852 AT3G46790

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 51ChloroplastSequence analysisAdd BLAST51
ChainiPRO_000035612452 – 657Pentatricopeptide repeat-containing protein At3g46790, chloroplasticAdd BLAST606

Proteomic databases

PaxDbiQ9STF3
PRIDEiQ9STF3

Expressioni

Gene expression databases

ExpressionAtlasiQ9STF3 baseline and differential
GenevisibleiQ9STF3 AT

Interactioni

Protein-protein interaction databases

BioGridi9152, 1 interactor
STRINGi3702.AT3G46790.1

Structurei

3D structure databases

ProteinModelPortaliQ9STF3
SMRiQ9STF3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati45 – 75PPR 1Add BLAST31
Repeati76 – 110PPR 2Add BLAST35
Repeati111 – 141PPR 3Add BLAST31
Repeati142 – 176PPR 4Add BLAST35
Repeati177 – 215PPR 5Add BLAST39
Repeati216 – 246PPR 6Add BLAST31
Repeati247 – 277PPR 7Add BLAST31
Repeati284 – 318PPR 8Add BLAST35
Repeati319 – 349PPR 9Add BLAST31
Repeati350 – 384PPR 10Add BLAST35
Repeati385 – 420PPR 11Add BLAST36
Repeati421 – 451PPR 12Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni456 – 531Type E motifAdd BLAST76
Regioni532 – 562Type E(+) motifAdd BLAST31
Regioni563 – 657Type DYW motifAdd BLAST95

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiQ9STF3
OMAiLCEDCHL
OrthoDBiEOG0936063C
PhylomeDBiQ9STF3

Family and domain databases

Gene3Di1.25.40.10, 4 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 3 hits
PF13041 PPR_2, 2 hits
TIGRFAMsiTIGR00756 PPR, 4 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 13 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9STF3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MFLSHPPQVI QPTYHTVNFL PRSPLKPPSC SVALNNPSIS SGAGAKISNN
60 70 80 90 100
QLIQSLCKEG KLKQAIRVLS QESSPSQQTY ELLILCCGHR SSLSDALRVH
110 120 130 140 150
RHILDNGSDQ DPFLATKLIG MYSDLGSVDY ARKVFDKTRK RTIYVWNALF
160 170 180 190 200
RALTLAGHGE EVLGLYWKMN RIGVESDRFT YTYVLKACVA SECTVNHLMK
210 220 230 240 250
GKEIHAHLTR RGYSSHVYIM TTLVDMYARF GCVDYASYVF GGMPVRNVVS
260 270 280 290 300
WSAMIACYAK NGKAFEALRT FREMMRETKD SSPNSVTMVS VLQACASLAA
310 320 330 340 350
LEQGKLIHGY ILRRGLDSIL PVISALVTMY GRCGKLEVGQ RVFDRMHDRD
360 370 380 390 400
VVSWNSLISS YGVHGYGKKA IQIFEEMLAN GASPTPVTFV SVLGACSHEG
410 420 430 440 450
LVEEGKRLFE TMWRDHGIKP QIEHYACMVD LLGRANRLDE AAKMVQDMRT
460 470 480 490 500
EPGPKVWGSL LGSCRIHGNV ELAERASRRL FALEPKNAGN YVLLADIYAE
510 520 530 540 550
AQMWDEVKRV KKLLEHRGLQ KLPGRCWMEV RRKMYSFVSV DEFNPLMEQI
560 570 580 590 600
HAFLVKLAED MKEKGYIPQT KGVLYELETE EKERIVLGHS EKLALAFGLI
610 620 630 640 650
NTSKGEPIRI TKNLRLCEDC HLFTKFISKF MEKEILVRDV NRFHRFKNGV

CSCGDYW
Length:657
Mass (Da):74,340
Last modified:May 1, 2000 - v1
Checksum:i8257019E45CCDFC8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL096859 Genomic DNA Translation: CAB51186.1
CP002686 Genomic DNA Translation: AEE78205.1
AK226825 mRNA Translation: BAE98921.1
PIRiT12969
RefSeqiNP_190263.1, NM_114546.4
UniGeneiAt.3629

Genome annotation databases

EnsemblPlantsiAT3G46790.1; AT3G46790.1; AT3G46790
GeneIDi823832
GrameneiAT3G46790.1; AT3G46790.1; AT3G46790
KEGGiath:AT3G46790

Similar proteinsi

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL096859 Genomic DNA Translation: CAB51186.1
CP002686 Genomic DNA Translation: AEE78205.1
AK226825 mRNA Translation: BAE98921.1
PIRiT12969
RefSeqiNP_190263.1, NM_114546.4
UniGeneiAt.3629

3D structure databases

ProteinModelPortaliQ9STF3
SMRiQ9STF3
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi9152, 1 interactor
STRINGi3702.AT3G46790.1

Proteomic databases

PaxDbiQ9STF3
PRIDEiQ9STF3

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G46790.1; AT3G46790.1; AT3G46790
GeneIDi823832
GrameneiAT3G46790.1; AT3G46790.1; AT3G46790
KEGGiath:AT3G46790

Organism-specific databases

AraportiAT3G46790
TAIRilocus:2102852 AT3G46790

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiQ9STF3
OMAiLCEDCHL
OrthoDBiEOG0936063C
PhylomeDBiQ9STF3

Miscellaneous databases

PROiPR:Q9STF3

Gene expression databases

ExpressionAtlasiQ9STF3 baseline and differential
GenevisibleiQ9STF3 AT

Family and domain databases

Gene3Di1.25.40.10, 4 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 3 hits
PF13041 PPR_2, 2 hits
TIGRFAMsiTIGR00756 PPR, 4 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 13 hits
ProtoNetiSearch...

Entry informationi

Entry nameiPP265_ARATH
AccessioniPrimary (citable) accession number: Q9STF3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: May 1, 2000
Last modified: April 25, 2018
This is version 100 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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