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Protein

Zinc finger protein CONSTANS-LIKE 9

Gene

COL9

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri5 – 47B box-type 1; atypicalPROSITE-ProRule annotationAdd BLAST43
Zinc fingeri48 – 99B box-type 2; atypicalPROSITE-ProRule annotationAdd BLAST52

GO - Molecular functioni

  • DNA-binding transcription factor activity Source: TAIR
  • zinc ion binding Source: InterPro

GO - Biological processi

  • circadian rhythm Source: TAIR
  • negative regulation of long-day photoperiodism, flowering Source: TAIR
  • regulation of transcription, DNA-templated Source: TAIR

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger protein CONSTANS-LIKE 9
Gene namesi
Name:COL9
Ordered Locus Names:At3g07650
ORF Names:MLP3.10
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G07650
TAIRilocus:2091082 AT3G07650

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001132861 – 372Zinc finger protein CONSTANS-LIKE 9Add BLAST372

Proteomic databases

PaxDbiQ9SSE5

PTM databases

iPTMnetiQ9SSE5

Expressioni

Gene expression databases

ExpressionAtlasiQ9SSE5 baseline and differential
GenevisibleiQ9SSE5 AT

Interactioni

Binary interactionsi

Protein-protein interaction databases

IntActiQ9SSE5, 6 interactors
STRINGi3702.AT3G07650.1

Structurei

3D structure databases

ProteinModelPortaliQ9SSE5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini315 – 357CCTPROSITE-ProRule annotationAdd BLAST43

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi77 – 83Poly-Asn7
Compositional biasi84 – 90Poly-Ser7

Sequence similaritiesi

Belongs to the CONSTANS family.Curated

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri5 – 47B box-type 1; atypicalPROSITE-ProRule annotationAdd BLAST43
Zinc fingeri48 – 99B box-type 2; atypicalPROSITE-ProRule annotationAdd BLAST52

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiENOG410IHQ3 Eukaryota
ENOG410YA5C LUCA
HOGENOMiHOG000116529
InParanoidiQ9SSE5
OMAiMILMGEP
OrthoDBiEOG09360F07
PhylomeDBiQ9SSE5

Family and domain databases

CDDicd00021 BBOX, 2 hits
InterProiView protein in InterPro
IPR010402 CCT_domain
IPR000315 Znf_B-box
PfamiView protein in Pfam
PF06203 CCT, 1 hit
SMARTiView protein in SMART
SM00336 BBOX, 2 hits
PROSITEiView protein in PROSITE
PS51017 CCT, 1 hit
PS50119 ZF_BBOX, 2 hits

Sequencei

Sequence statusi: Complete.

Q9SSE5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER
60 70 80 90 100
CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
110 120 130 140 150
CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED
160 170 180 190 200
KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
210 220 230 240 250
YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS
260 270 280 290 300
KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
310 320 330 340 350
PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV
360 370
KGRFVKAGEA YDYDPLTPTR SY
Length:372
Mass (Da):40,754
Last modified:May 1, 2000 - v1
Checksum:i188F18EB283D7479
GO

Sequence cautioni

The sequence AAK83632 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009176 Genomic DNA Translation: AAF13083.1
CP002686 Genomic DNA Translation: AEE74580.1
CP002686 Genomic DNA Translation: AEE74581.1
CP002686 Genomic DNA Translation: AEE74582.1
CP002686 Genomic DNA Translation: AEE74583.1
AY049290 mRNA Translation: AAK83632.1 Different initiation.
RefSeqiNP_001030659.1, NM_001035582.1
NP_001118599.1, NM_001125127.2
NP_187422.1, NM_111644.5
NP_974250.1, NM_202521.2
UniGeneiAt.18337

Genome annotation databases

EnsemblPlantsiAT3G07650.1; AT3G07650.1; AT3G07650
AT3G07650.2; AT3G07650.2; AT3G07650
AT3G07650.3; AT3G07650.3; AT3G07650
AT3G07650.4; AT3G07650.4; AT3G07650
GeneIDi819956
GrameneiAT3G07650.1; AT3G07650.1; AT3G07650
AT3G07650.2; AT3G07650.2; AT3G07650
AT3G07650.3; AT3G07650.3; AT3G07650
AT3G07650.4; AT3G07650.4; AT3G07650
KEGGiath:AT3G07650

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009176 Genomic DNA Translation: AAF13083.1
CP002686 Genomic DNA Translation: AEE74580.1
CP002686 Genomic DNA Translation: AEE74581.1
CP002686 Genomic DNA Translation: AEE74582.1
CP002686 Genomic DNA Translation: AEE74583.1
AY049290 mRNA Translation: AAK83632.1 Different initiation.
RefSeqiNP_001030659.1, NM_001035582.1
NP_001118599.1, NM_001125127.2
NP_187422.1, NM_111644.5
NP_974250.1, NM_202521.2
UniGeneiAt.18337

3D structure databases

ProteinModelPortaliQ9SSE5
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ9SSE5, 6 interactors
STRINGi3702.AT3G07650.1

PTM databases

iPTMnetiQ9SSE5

Proteomic databases

PaxDbiQ9SSE5

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G07650.1; AT3G07650.1; AT3G07650
AT3G07650.2; AT3G07650.2; AT3G07650
AT3G07650.3; AT3G07650.3; AT3G07650
AT3G07650.4; AT3G07650.4; AT3G07650
GeneIDi819956
GrameneiAT3G07650.1; AT3G07650.1; AT3G07650
AT3G07650.2; AT3G07650.2; AT3G07650
AT3G07650.3; AT3G07650.3; AT3G07650
AT3G07650.4; AT3G07650.4; AT3G07650
KEGGiath:AT3G07650

Organism-specific databases

AraportiAT3G07650
TAIRilocus:2091082 AT3G07650

Phylogenomic databases

eggNOGiENOG410IHQ3 Eukaryota
ENOG410YA5C LUCA
HOGENOMiHOG000116529
InParanoidiQ9SSE5
OMAiMILMGEP
OrthoDBiEOG09360F07
PhylomeDBiQ9SSE5

Miscellaneous databases

PROiPR:Q9SSE5

Gene expression databases

ExpressionAtlasiQ9SSE5 baseline and differential
GenevisibleiQ9SSE5 AT

Family and domain databases

CDDicd00021 BBOX, 2 hits
InterProiView protein in InterPro
IPR010402 CCT_domain
IPR000315 Znf_B-box
PfamiView protein in Pfam
PF06203 CCT, 1 hit
SMARTiView protein in SMART
SM00336 BBOX, 2 hits
PROSITEiView protein in PROSITE
PS51017 CCT, 1 hit
PS50119 ZF_BBOX, 2 hits
ProtoNetiSearch...

Entry informationi

Entry nameiCOL9_ARATH
AccessioniPrimary (citable) accession number: Q9SSE5
Secondary accession number(s): Q94A77
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 5, 2001
Last sequence update: May 1, 2000
Last modified: September 12, 2018
This is version 115 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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