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Protein

Pentatricopeptide repeat-containing protein At3g09040, mitochondrial

Gene

PCMP-E88

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At3g09040, mitochondrial
Gene namesi
Name:PCMP-E88
Ordered Locus Names:At3g09040
ORF Names:MZB10.7
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G09040
TAIRilocus:2095289 AT3G09040

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 30MitochondrionSequence analysisAdd BLAST30
ChainiPRO_000035607931 – 1028Pentatricopeptide repeat-containing protein At3g09040, mitochondrialAdd BLAST998

Proteomic databases

PaxDbiQ9SS83
PRIDEiQ9SS83

Expressioni

Gene expression databases

ExpressionAtlasiQ9SS83 baseline and differential
GenevisibleiQ9SS83 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G09040.1

Structurei

3D structure databases

ProteinModelPortaliQ9SS83
SMRiQ9SS83
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati94 – 123PPR 1Add BLAST30
Repeati124 – 158PPR 2Add BLAST35
Repeati159 – 193PPR 3Add BLAST35
Repeati194 – 224PPR 4Add BLAST31
Repeati225 – 259PPR 5Add BLAST35
Repeati260 – 290PPR 6Add BLAST31
Repeati291 – 325PPR 7Add BLAST35
Repeati326 – 360PPR 8Add BLAST35
Repeati361 – 391PPR 9Add BLAST31
Repeati392 – 426PPR 10Add BLAST35
Repeati427 – 461PPR 11Add BLAST35
Repeati462 – 492PPR 12Add BLAST31
Repeati493 – 527PPR 13Add BLAST35
Repeati528 – 562PPR 14Add BLAST35
Repeati563 – 593PPR 15Add BLAST31
Repeati594 – 627PPR 16Add BLAST34
Repeati628 – 662PPR 17Add BLAST35
Repeati664 – 694PPR 18Add BLAST31
Repeati696 – 730PPR 19Add BLAST35
Repeati731 – 765PPR 20Add BLAST35
Repeati766 – 796PPR 21Add BLAST31
Repeati798 – 832PPR 22Add BLAST35
Repeati833 – 863PPR 23Add BLAST31
Repeati869 – 899PPR 24Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni904 – 979Type E motifAdd BLAST76
Regioni980 – 1010Type E(+) motifAdd BLAST31

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiQ9SS83
OMAiSLLGMYM
OrthoDBiEOG093600YH
PhylomeDBiQ9SS83

Family and domain databases

Gene3Di1.25.40.10, 8 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 7 hits
PF13041 PPR_2, 5 hits
TIGRFAMsiTIGR00756 PPR, 7 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 19 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9SS83-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYFRVLLTPS SAMFDSFSFV RRLSYSPDLG RRIYGHVLPS HDQIHQRLLE
60 70 80 90 100
ICLGQCKLFK SRKVFDEMPQ RLALALRIGK AVHSKSLILG IDSEGRLGNA
110 120 130 140 150
IVDLYAKCAQ VSYAEKQFDF LEKDVTAWNS MLSMYSSIGK PGKVLRSFVS
160 170 180 190 200
LFENQIFPNK FTFSIVLSTC ARETNVEFGR QIHCSMIKMG LERNSYCGGA
210 220 230 240 250
LVDMYAKCDR ISDARRVFEW IVDPNTVCWT CLFSGYVKAG LPEEAVLVFE
260 270 280 290 300
RMRDEGHRPD HLAFVTVINT YIRLGKLKDA RLLFGEMSSP DVVAWNVMIS
310 320 330 340 350
GHGKRGCETV AIEYFFNMRK SSVKSTRSTL GSVLSAIGIV ANLDLGLVVH
360 370 380 390 400
AEAIKLGLAS NIYVGSSLVS MYSKCEKMEA AAKVFEALEE KNDVFWNAMI
410 420 430 440 450
RGYAHNGESH KVMELFMDMK SSGYNIDDFT FTSLLSTCAA SHDLEMGSQF
460 470 480 490 500
HSIIIKKKLA KNLFVGNALV DMYAKCGALE DARQIFERMC DRDNVTWNTI
510 520 530 540 550
IGSYVQDENE SEAFDLFKRM NLCGIVSDGA CLASTLKACT HVHGLYQGKQ
560 570 580 590 600
VHCLSVKCGL DRDLHTGSSL IDMYSKCGII KDARKVFSSL PEWSVVSMNA
610 620 630 640 650
LIAGYSQNNL EEAVVLFQEM LTRGVNPSEI TFATIVEACH KPESLTLGTQ
660 670 680 690 700
FHGQITKRGF SSEGEYLGIS LLGMYMNSRG MTEACALFSE LSSPKSIVLW
710 720 730 740 750
TGMMSGHSQN GFYEEALKFY KEMRHDGVLP DQATFVTVLR VCSVLSSLRE
760 770 780 790 800
GRAIHSLIFH LAHDLDELTS NTLIDMYAKC GDMKGSSQVF DEMRRRSNVV
810 820 830 840 850
SWNSLINGYA KNGYAEDALK IFDSMRQSHI MPDEITFLGV LTACSHAGKV
860 870 880 890 900
SDGRKIFEMM IGQYGIEARV DHVACMVDLL GRWGYLQEAD DFIEAQNLKP
910 920 930 940 950
DARLWSSLLG ACRIHGDDIR GEISAEKLIE LEPQNSSAYV LLSNIYASQG
960 970 980 990 1000
CWEKANALRK VMRDRGVKKV PGYSWIDVEQ RTHIFAAGDK SHSEIGKIEM
1010 1020
FLEDLYDLMK DDAVVNPDIV EQGSLDCV
Length:1,028
Mass (Da):115,014
Last modified:May 1, 2000 - v1
Checksum:i0F069531A545FE58
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009326 Genomic DNA Translation: AAD56320.1
CP002686 Genomic DNA Translation: AEE74713.1
CP002686 Genomic DNA Translation: ANM64907.1
RefSeqiNP_001319506.1, NM_001337795.1
NP_187516.1, NM_111738.1
UniGeneiAt.40178

Genome annotation databases

EnsemblPlantsiAT3G09040.1; AT3G09040.1; AT3G09040
AT3G09040.4; AT3G09040.4; AT3G09040
GeneIDi820057
GrameneiAT3G09040.1; AT3G09040.1; AT3G09040
AT3G09040.4; AT3G09040.4; AT3G09040
KEGGiath:AT3G09040

Similar proteinsi

Entry informationi

Entry nameiPP220_ARATH
AccessioniPrimary (citable) accession number: Q9SS83
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: May 1, 2000
Last modified: May 23, 2018
This is version 95 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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