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Protein

Zinc finger CCCH domain-containing protein 34

Gene

At3g06410

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri54 – 82C3H1-type 1PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri100 – 128C3H1-type 2PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri148 – 176C3H1-type 3PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri307 – 335C3H1-type 4PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri353 – 381C3H1-type 5PROSITE-ProRule annotationAdd BLAST29

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • metal ion binding Source: UniProtKB-KW
  • mRNA binding Source: TAIR

Keywordsi

Molecular functionDNA-binding
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger CCCH domain-containing protein 34
Short name:
AtC3H34
Alternative name(s):
Zinc finger CCCH domain-containing protein ZFN-like 2
Gene namesi
Ordered Locus Names:At3g06410
ORF Names:F24P17.12
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G06410
TAIRilocus:2081066 AT3G06410

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002139161 – 462Zinc finger CCCH domain-containing protein 34Add BLAST462

Proteomic databases

PaxDbiQ9SQU4

Expressioni

Gene expression databases

ExpressionAtlasiQ9SQU4 baseline and differential
GenevisibleiQ9SQU4 AT

Interactioni

Protein-protein interaction databases

IntActiQ9SQU4, 3 interactors

Structurei

3D structure databases

ProteinModelPortaliQ9SQU4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi37 – 133Gly-richAdd BLAST97
Compositional biasi180 – 214Gln-richAdd BLAST35

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri54 – 82C3H1-type 1PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri100 – 128C3H1-type 2PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri148 – 176C3H1-type 3PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri307 – 335C3H1-type 4PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri353 – 381C3H1-type 5PROSITE-ProRule annotationAdd BLAST29

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiKOG1677 Eukaryota
COG5063 LUCA
HOGENOMiHOG000237733
InParanoidiQ9SQU4
OMAiEPMWQLG
OrthoDBiEOG09360CP8
PhylomeDBiQ9SQU4

Family and domain databases

InterProiView protein in InterPro
IPR000571 Znf_CCCH
IPR036855 Znf_CCCH_sf
PfamiView protein in Pfam
PF00642 zf-CCCH, 5 hits
SMARTiView protein in SMART
SM00356 ZnF_C3H1, 5 hits
SUPFAMiSSF90229 SSF90229, 5 hits
PROSITEiView protein in PROSITE
PS50103 ZF_C3H1, 5 hits

Sequencei

Sequence statusi: Complete.

Q9SQU4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MERYGRPGEE GSRSDPSLEW TSHGGETAVE APMWRLGLSG GGGGGGGGES
60 70 80 90 100
YPERPDEPDC IYYLRTGVCG YGSRCRFNHP RDRGAVIGGV RGEAGALPER
110 120 130 140 150
MGHPVCQHFM RTGTCKFGAS CKYHHPRQGG GGGSVAPVSL SYLGYPLRPG
160 170 180 190 200
EKECSYYLRT GQCKFGLTCR FNHPVPLAVQ GPPQQPQQQQ PQPQPQLQTI
210 220 230 240 250
YPTLQSQSIP SSQQYGLVLT RPSFLTGSYL QSPYGPPMVL PPGMVPYSGW
260 270 280 290 300
NPYQASLSAM PSPGTQPSIG SSSIYGLTPL SPSATAYTGT YQSVPSSNST
310 320 330 340 350
SKEFPQRPDQ PECQYFMRTG DCKFGSSCRY HHPVDAVPPK TGIVLSSIGL
360 370 380 390 400
PLRPGVAQCT HFAQHGICKF GPACKFDHSM SSSLSYSPSA SSLTDMPVAP
410 420 430 440 450
YPIGSSSLSG SSAPVSSSNE PTKEAVTPAV SSMVSGLSRP EPAETSGDSA
460
SVSGSIEAKT SS
Length:462
Mass (Da):48,852
Last modified:June 26, 2007 - v2
Checksum:iEB5A66BFF6535AAF
GO

Sequence cautioni

The sequence AAF08587 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti460T → A in BAF02113 (Ref. 3) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC011623 Genomic DNA Translation: AAF08587.1 Sequence problems.
CP002686 Genomic DNA Translation: AEE74389.1
AK230312 mRNA Translation: BAF02113.1
AK230438 mRNA Translation: BAF02236.1
RefSeqiNP_187292.2, NM_111516.5
UniGeneiAt.27771

Genome annotation databases

EnsemblPlantsiAT3G06410.1; AT3G06410.1; AT3G06410
GeneIDi819815
GrameneiAT3G06410.1; AT3G06410.1; AT3G06410
KEGGiath:AT3G06410

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC011623 Genomic DNA Translation: AAF08587.1 Sequence problems.
CP002686 Genomic DNA Translation: AEE74389.1
AK230312 mRNA Translation: BAF02113.1
AK230438 mRNA Translation: BAF02236.1
RefSeqiNP_187292.2, NM_111516.5
UniGeneiAt.27771

3D structure databases

ProteinModelPortaliQ9SQU4
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ9SQU4, 3 interactors

Proteomic databases

PaxDbiQ9SQU4

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G06410.1; AT3G06410.1; AT3G06410
GeneIDi819815
GrameneiAT3G06410.1; AT3G06410.1; AT3G06410
KEGGiath:AT3G06410

Organism-specific databases

AraportiAT3G06410
TAIRilocus:2081066 AT3G06410

Phylogenomic databases

eggNOGiKOG1677 Eukaryota
COG5063 LUCA
HOGENOMiHOG000237733
InParanoidiQ9SQU4
OMAiEPMWQLG
OrthoDBiEOG09360CP8
PhylomeDBiQ9SQU4

Miscellaneous databases

PROiPR:Q9SQU4

Gene expression databases

ExpressionAtlasiQ9SQU4 baseline and differential
GenevisibleiQ9SQU4 AT

Family and domain databases

InterProiView protein in InterPro
IPR000571 Znf_CCCH
IPR036855 Znf_CCCH_sf
PfamiView protein in Pfam
PF00642 zf-CCCH, 5 hits
SMARTiView protein in SMART
SM00356 ZnF_C3H1, 5 hits
SUPFAMiSSF90229 SSF90229, 5 hits
PROSITEiView protein in PROSITE
PS50103 ZF_C3H1, 5 hits
ProtoNetiSearch...

Entry informationi

Entry nameiC3H34_ARATH
AccessioniPrimary (citable) accession number: Q9SQU4
Secondary accession number(s): Q0WKX1, Q0WL94
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 26, 2005
Last sequence update: June 26, 2007
Last modified: November 7, 2018
This is version 102 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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