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Entry version 131 (02 Dec 2020)
Sequence version 1 (01 May 2000)
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Protein

CDP-diacylglycerol synthase

Gene

F1P2.180

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>This subsection of the 'Function' section provides information relevant to cofactors. A cofactor is any non-protein substance required for a protein to be catalytically active. Some cofactors are inorganic, such as the metal atoms zinc, iron, and copper in various oxidation states. Others, such as most vitamins, are organic.<p><a href='/help/cofactor' target='_top'>More...</a></p>Cofactori

Mg2+ARBA annotation

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section describes the metabolic pathway(s) associated with a protein.<p><a href='/help/pathway' target='_top'>More...</a></p>Pathwayi: Lipid metabolism

This protein is involved in Lipid metabolism.ARBA annotation
View all proteins of this organism that are known to be involved in Lipid metabolism.

Pathwayi: CDP-diacylglycerol biosynthesis

This protein is involved in step 3 of the subpathway that synthesizes CDP-diacylglycerol from sn-glycerol 3-phosphate.ARBA annotation
Proteins known to be involved in the 3 steps of the subpathway in this organism are:
  1. Probable glycerol-3-phosphate acyltransferase 2 (GPAT2), Probable glycerol-3-phosphate acyltransferase 3 (GPAT3), Glycerol-3-phosphate acyltransferase, chloroplastic (C24_LOCUS3178), Glycerol-3-phosphate acyltransferase 7 (GPAT7), Glycerol-3-phosphate acyltransferase, chloroplastic (ATS1), Probable glycerol-3-phosphate acyltransferase 8 (GPAT8), Glycerol-3-phosphate acyltransferase 1 (GPAT1), Glycerol-3-phosphate acyltransferase 5 (GPAT5), Glycerol-3-phosphate acyltransferase, chloroplastic (AXX17_At1g32940)
  2. 1-acylglycerol-3-phosphate O-acyltransferase (AN1_LOCUS13297), 1-acyl-sn-glycerol-3-phosphate acyltransferase 3 (LPAT3), 1-acylglycerol-3-phosphate O-acyltransferase (AXX17_At1g69410), 1-acylglycerol-3-phosphate O-acyltransferase (AN1_LOCUS16143), 1-acylglycerol-3-phosphate O-acyltransferase, 1-acylglycerol-3-phosphate O-acyltransferase (LPAT5), 1-acyl-sn-glycerol-3-phosphate acyltransferase 2 (LPAT2), DNA-directed RNA polymerase subunit (At3g57650), 1-acylglycerol-3-phosphate O-acyltransferase (LPAT5), 1-acylglycerol-3-phosphate O-acyltransferase (AN1_LOCUS6543), 1-acyl-sn-glycerol-3-phosphate acyltransferase LPAT1, chloroplastic (LPAT1), Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 (LPAT5), 1-acylglycerol-3-phosphate O-acyltransferase (AXX17_At3g20050), Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 (LPAT4), 1-acylglycerol-3-phosphate O-acyltransferase (C24_LOCUS13131), 1-acylglycerol-3-phosphate O-acyltransferase (C24_LOCUS16026), 1-acylglycerol-3-phosphate O-acyltransferase (AXX17_At1g45450), 1-acylglycerol-3-phosphate O-acyltransferase (C24_LOCUS4117)
  3. CDP-diacylglycerol synthase (F1P2.180), Phosphatidate cytidylyltransferase 1 (CDS1), Phosphatidate cytidylyltransferase (AN1_LOCUS5239), Phosphatidate cytidylyltransferase (C24_LOCUS18856), Phosphatidate cytidylyltransferase 3 (CDS3), Phosphatidate cytidylyltransferase (AXX17_At1g55730), Phosphatidate cytidylyltransferase (AXX17_At3g55010), Phosphatidate cytidylyltransferase 4, chloroplastic (CDS4), Phosphatidate cytidylyltransferase 2 (CDS2), Phosphatidate cytidylyltransferase (AXX17_At4g25970), Phosphatidate cytidylyltransferase (AXX17_At2g42720), CDP-diacylglycerol synthase (AN1_LOCUS15099), Phosphatidate cytidylyltransferase 5, chloroplastic (CDS5), Phosphatidate cytidylyltransferase (AN1_LOCUS18959), Phosphatidate cytidylyltransferase (AXX17_At4g30920), Phosphatidate cytidylyltransferase (CDS2), CDP-diacylglycerol synthase (At3g47630), CDP-diacylglycerol synthase (C24_LOCUS14979), Phosphatidate cytidylyltransferase (C24_LOCUS5115), CDP-diacylglycerol synthase (At3g47630), Phosphatidate cytidylyltransferase (CDS2), CDP-diacylglycerol synthase (AXX17_At3g41620), CDP-diacylglycerol synthase (At3g47630)
This subpathway is part of the pathway CDP-diacylglycerol biosynthesis, which is itself part of Phospholipid metabolism.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes CDP-diacylglycerol from sn-glycerol 3-phosphate, the pathway CDP-diacylglycerol biosynthesis and in Phospholipid metabolism.

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionNucleotidyltransferaseARBA annotation, Transferase
Biological processLipid metabolismARBA annotation
LigandMagnesiumARBA annotation

Enzyme and pathway databases

UniPathway: a resource for the exploration and annotation of metabolic pathways

More...
UniPathwayi
UPA00557;UER00614

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
CDP-diacylglycerol synthaseARBA annotation (EC:2.7.7.41ARBA annotation)
Alternative name(s):
Phosphatidate cytidylyltransferase, mitochondrialARBA annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:F1P2.180Imported
Ordered Locus Names:At3g47630Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 3

Organism-specific databases

The Arabidopsis Information Resource

More...
TAIRi
locus:2079207, AT3G47630

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Membrane, Mitochondrion, Mitochondrion inner membraneARBA annotation

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PRoteomics IDEntifications database

More...
PRIDEi
Q9SN75

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
185650

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3702.AT3G47630.2

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q9SN75

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the TAM41 family.ARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG2986, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_030279_1_1_1

Identification of Orthologs from Complete Genome Data

More...
OMAi
HYSFLKF

Database of Orthologous Groups

More...
OrthoDBi
1145430at2759

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR015222, Tam41

The PANTHER Classification System

More...
PANTHERi
PTHR13619, PTHR13619, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF09139, Tam41_Mmp37, 1 hit

PIRSF; a whole-protein classification database

More...
PIRSFi
PIRSF028840, Mmp37, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 3 potential isoforms that are computationally mapped.Show allAlign All

Q9SN75-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
METTQKDELS SFLSVLPPVD FCCVYGSTLH PNNQDKSKMV DYILGVSDPI
60 70 80 90 100
KWHSANLKMN SDHYASWMVH LGGARLITNV ADKVGVGVHF NPFVNWNDRK
110 120 130 140 150
LKYGVVRMHD LVQDILDWKR FYLSGRLQKP VHMLVDNLDI EDVNSVNKRA
160 170 180 190 200
AISAALLLLP SKFTEEDLYA KICSLSYMGD LRMFFAEDTN KVNKIVKGQF
210 220 230 240 250
DLFQSMYKPF LEECETKNLL RFSSAEASHT KLVQDSSLSA TRSLVSSLPA
260 270 280 290 300
SVRSQMGKSL GEKKFVSETG RVMGEVCISS REEAAKCMEK VMRRRVMVSS
310 320 330
GRQAVSGFLA AGAINATMYL SQKMRKAWNS RA
Length:332
Mass (Da):37,362
Last modified:May 1, 2000 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i7FBD15FC10929EA9
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F4JBM0F4JBM0_ARATH
CDP-diacylglycerol synthase
At3g47630
320Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1I9LR92A0A1I9LR92_ARATH
CDP-diacylglycerol synthase
At3g47630
225Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1I9LR93A0A1I9LR93_ARATH
CDP-diacylglycerol synthase
At3g47630
275Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
BT011614 mRNA Translation: AAS47620.1
BT020331 mRNA Translation: AAV85686.1
CP002686 Genomic DNA Translation: AEE78310.1
CP002686 Genomic DNA Translation: ANM65098.1
CP002686 Genomic DNA Translation: ANM65099.1
AK229377 mRNA Translation: BAF01239.1
AL132955 Genomic DNA Translation: CAB61989.1

Protein sequence database of the Protein Information Resource

More...
PIRi
T45723

NCBI Reference Sequences

More...
RefSeqi
NP_001030827.1, NM_001035750.2
NP_001327093.1, NM_001339323.1
NP_001327094.1, NM_001339320.1

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT3G47630.2; AT3G47630.2; AT3G47630
AT3G47630.3; AT3G47630.3; AT3G47630
AT3G47630.6; AT3G47630.6; AT3G47630

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
823917

Gramene; a comparative resource for plants

More...
Gramenei
AT3G47630.2; AT3G47630.2; AT3G47630
AT3G47630.3; AT3G47630.3; AT3G47630
AT3G47630.6; AT3G47630.6; AT3G47630

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT3G47630

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BT011614 mRNA Translation: AAS47620.1
BT020331 mRNA Translation: AAV85686.1
CP002686 Genomic DNA Translation: AEE78310.1
CP002686 Genomic DNA Translation: ANM65098.1
CP002686 Genomic DNA Translation: ANM65099.1
AK229377 mRNA Translation: BAF01239.1
AL132955 Genomic DNA Translation: CAB61989.1
PIRiT45723
RefSeqiNP_001030827.1, NM_001035750.2
NP_001327093.1, NM_001339323.1
NP_001327094.1, NM_001339320.1

3D structure databases

SMRiQ9SN75
ModBaseiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G47630.2

Proteomic databases

PRIDEiQ9SN75
ProteomicsDBi185650

Protocols and materials databases

The DNASU plasmid repository

More...
DNASUi
823917

Genome annotation databases

EnsemblPlantsiAT3G47630.2; AT3G47630.2; AT3G47630
AT3G47630.3; AT3G47630.3; AT3G47630
AT3G47630.6; AT3G47630.6; AT3G47630
GeneIDi823917
GrameneiAT3G47630.2; AT3G47630.2; AT3G47630
AT3G47630.3; AT3G47630.3; AT3G47630
AT3G47630.6; AT3G47630.6; AT3G47630
KEGGiath:AT3G47630

Organism-specific databases

TAIRilocus:2079207, AT3G47630

Phylogenomic databases

eggNOGiKOG2986, Eukaryota
HOGENOMiCLU_030279_1_1_1
OMAiHYSFLKF
OrthoDBi1145430at2759

Enzyme and pathway databases

UniPathwayiUPA00557;UER00614

Family and domain databases

InterProiView protein in InterPro
IPR015222, Tam41
PANTHERiPTHR13619, PTHR13619, 1 hit
PfamiView protein in Pfam
PF09139, Tam41_Mmp37, 1 hit
PIRSFiPIRSF028840, Mmp37, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ9SN75_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9SN75
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: December 2, 2020
This is version 131 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Proteomics identificationCombined sources, Reference proteomeImported
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Main funding by: National Institutes of Health

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