Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Putative 60S ribosomal protein L13-2

Gene

RPL13C

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

  • RNA binding Source: GO_Central
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
Putative 60S ribosomal protein L13-2
Gene namesi
Name:RPL13C
Ordered Locus Names:At3g48960
ORF Names:T2J13.200
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G48960
TAIRilocus:2101328 AT3G48960

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002405141 – 206Putative 60S ribosomal protein L13-2Add BLAST206

Proteomic databases

PaxDbiQ9SMT4
PRIDEiQ9SMT4

Expressioni

Gene expression databases

ExpressionAtlasiQ9SMT4 baseline and differential
GenevisibleiQ9SMT4 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G48960.1

Structurei

3D structure databases

ProteinModelPortaliQ9SMT4
SMRiQ9SMT4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3295 Eukaryota
COG4352 LUCA
HOGENOMiHOG000170452
InParanoidiQ9SMT4
KOiK02873
OrthoDBiEOG09360OQA
PhylomeDBiQ9SMT4

Family and domain databases

HAMAPiMF_00499 Ribosomal_L13e, 1 hit
InterProiView protein in InterPro
IPR001380 Ribosomal_L13e
IPR018256 Ribosomal_L13e_CS
PANTHERiPTHR11722 PTHR11722, 1 hit
PfamiView protein in Pfam
PF01294 Ribosomal_L13e, 1 hit
PROSITEiView protein in PROSITE
PS01104 RIBOSOMAL_L13E, 1 hit

Sequencei

Sequence statusi: Complete.

Q9SMT4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKHNNVIPNG HFKKKWENYV KTSFNQPAMK TRRRIARQNK AVKIFPRPTA
60 70 80 90 100
GPIRPVVHAQ TLTYNMKVRA GKGFTLEELK AAGIPKKLAP TIGISVDHHR
110 120 130 140 150
KNRSLEGFQT NVQRLKTYKA KLVIFPRCAR TVKVGDSAQQ ELANATQVQV
160 170 180 190 200
DHMPIVREMP TMELVKLTSD MKLFNAYDKI RLEGINKRHA GVRAKRAAEA

EKEEKK
Length:206
Mass (Da):23,503
Last modified:May 1, 2000 - v1
Checksum:iBA8FF67659CF1186
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL132967 Genomic DNA Translation: CAB62014.1
CP002686 Genomic DNA Translation: AEE78477.1
PIRiT46134
RefSeqiNP_190465.1, NM_114755.1
UniGeneiAt.53843

Genome annotation databases

EnsemblPlantsiAT3G48960.1; AT3G48960.1; AT3G48960
GeneIDi824057
GrameneiAT3G48960.1; AT3G48960.1; AT3G48960
KEGGiath:AT3G48960

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL132967 Genomic DNA Translation: CAB62014.1
CP002686 Genomic DNA Translation: AEE78477.1
PIRiT46134
RefSeqiNP_190465.1, NM_114755.1
UniGeneiAt.53843

3D structure databases

ProteinModelPortaliQ9SMT4
SMRiQ9SMT4
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G48960.1

Proteomic databases

PaxDbiQ9SMT4
PRIDEiQ9SMT4

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G48960.1; AT3G48960.1; AT3G48960
GeneIDi824057
GrameneiAT3G48960.1; AT3G48960.1; AT3G48960
KEGGiath:AT3G48960

Organism-specific databases

AraportiAT3G48960
TAIRilocus:2101328 AT3G48960

Phylogenomic databases

eggNOGiKOG3295 Eukaryota
COG4352 LUCA
HOGENOMiHOG000170452
InParanoidiQ9SMT4
KOiK02873
OrthoDBiEOG09360OQA
PhylomeDBiQ9SMT4

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Miscellaneous databases

PROiPR:Q9SMT4

Gene expression databases

ExpressionAtlasiQ9SMT4 baseline and differential
GenevisibleiQ9SMT4 AT

Family and domain databases

HAMAPiMF_00499 Ribosomal_L13e, 1 hit
InterProiView protein in InterPro
IPR001380 Ribosomal_L13e
IPR018256 Ribosomal_L13e_CS
PANTHERiPTHR11722 PTHR11722, 1 hit
PfamiView protein in Pfam
PF01294 Ribosomal_L13e, 1 hit
PROSITEiView protein in PROSITE
PS01104 RIBOSOMAL_L13E, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRL132_ARATH
AccessioniPrimary (citable) accession number: Q9SMT4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: May 1, 2000
Last modified: April 25, 2018
This is version 95 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families
  3. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again