Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Nuclear transcription factor Y subunit C-1

Gene

NFYC1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.By similarity

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • DNA-binding transcription factor activity Source: TAIR
  • protein heterodimerization activity Source: InterPro

GO - Biological processi

  • positive regulation of photomorphogenesis Source: TAIR
  • positive regulation of transcription, DNA-templated Source: TAIR
  • regulation of transcription, DNA-templated Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionActivator, DNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Nuclear transcription factor Y subunit C-1
Short name:
AtNF-YC-1
Alternative name(s):
Transcriptional activator HAP5A
Gene namesi
Name:NFYC1
Synonyms:HAP5A
Ordered Locus Names:At3g48590
ORF Names:T8P19.100
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G48590
TAIRilocus:2114555 AT3G48590

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002182501 – 234Nuclear transcription factor Y subunit C-1Add BLAST234

Proteomic databases

PaxDbiQ9SMP0
PRIDEiQ9SMP0

Expressioni

Tissue specificityi

Ubiquitous. Present in etiolated seedlings.3 Publications

Gene expression databases

ExpressionAtlasiQ9SMP0 baseline and differential
GenevisibleiQ9SMP0 AT

Interactioni

Subunit structurei

Heterotrimeric transcription factor composed of three components, NF-YA, NF-YB and NF-YC. NF-YB and NF-YC must interact and dimerize for NF-YA association and DNA binding (By similarity).By similarity

Binary interactionsi

GO - Molecular functioni

Protein-protein interaction databases

BioGridi9337, 21 interactors
IntActiQ9SMP0, 39 interactors
STRINGi3702.AT3G48590.1

Structurei

3D structure databases

ProteinModelPortaliQ9SMP0
SMRiQ9SMP0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi16 – 20Poly-Pro5
Compositional biasi38 – 45Poly-Gln8

Sequence similaritiesi

Belongs to the NFYC/HAP5 subunit family.Curated

Phylogenomic databases

eggNOGiKOG1657 Eukaryota
COG5208 LUCA
HOGENOMiHOG000200436
InParanoidiQ9SMP0
OMAiLFWTYQR
OrthoDBiEOG09360OYL
PhylomeDBiQ9SMP0

Family and domain databases

Gene3Di1.10.20.10, 1 hit
InterProiView protein in InterPro
IPR003958 CBFA_NFYB_domain
IPR009072 Histone-fold
PfamiView protein in Pfam
PF00808 CBFD_NFYB_HMF, 1 hit
SUPFAMiSSF47113 SSF47113, 1 hit

Sequencei

Sequence statusi: Complete.

Q9SMP0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDTNNQQPPP SAAGIPPPPP GTTISAAGGG ASYHHLLQQQ QQQLQLFWTY
60 70 80 90 100
QRQEIEQVND FKNHQLPLAR IKKIMKADED VRMISAEAPI LFAKACELFI
110 120 130 140 150
LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA
160 170 180 190 200
AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
210 220 230
QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG
Length:234
Mass (Da):25,329
Last modified:May 1, 2000 - v1
Checksum:i65B0DD2F8FA14A44
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL133315 Genomic DNA Translation: CAB62348.1
CP002686 Genomic DNA Translation: AEE78434.1
AY092997 mRNA Translation: AAM12996.1
BT001206 mRNA Translation: AAN65093.1
AY086120 mRNA Translation: AAM63326.1
Y13726 mRNA Translation: CAA74054.1
PIRiT46203
RefSeqiNP_190428.1, NM_114718.4
UniGeneiAt.23009

Genome annotation databases

EnsemblPlantsiAT3G48590.1; AT3G48590.1; AT3G48590
GeneIDi824019
GrameneiAT3G48590.1; AT3G48590.1; AT3G48590
KEGGiath:AT3G48590

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL133315 Genomic DNA Translation: CAB62348.1
CP002686 Genomic DNA Translation: AEE78434.1
AY092997 mRNA Translation: AAM12996.1
BT001206 mRNA Translation: AAN65093.1
AY086120 mRNA Translation: AAM63326.1
Y13726 mRNA Translation: CAA74054.1
PIRiT46203
RefSeqiNP_190428.1, NM_114718.4
UniGeneiAt.23009

3D structure databases

ProteinModelPortaliQ9SMP0
SMRiQ9SMP0
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi9337, 21 interactors
IntActiQ9SMP0, 39 interactors
STRINGi3702.AT3G48590.1

Proteomic databases

PaxDbiQ9SMP0
PRIDEiQ9SMP0

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G48590.1; AT3G48590.1; AT3G48590
GeneIDi824019
GrameneiAT3G48590.1; AT3G48590.1; AT3G48590
KEGGiath:AT3G48590

Organism-specific databases

AraportiAT3G48590
TAIRilocus:2114555 AT3G48590

Phylogenomic databases

eggNOGiKOG1657 Eukaryota
COG5208 LUCA
HOGENOMiHOG000200436
InParanoidiQ9SMP0
OMAiLFWTYQR
OrthoDBiEOG09360OYL
PhylomeDBiQ9SMP0

Miscellaneous databases

PROiPR:Q9SMP0

Gene expression databases

ExpressionAtlasiQ9SMP0 baseline and differential
GenevisibleiQ9SMP0 AT

Family and domain databases

Gene3Di1.10.20.10, 1 hit
InterProiView protein in InterPro
IPR003958 CBFA_NFYB_domain
IPR009072 Histone-fold
PfamiView protein in Pfam
PF00808 CBFD_NFYB_HMF, 1 hit
SUPFAMiSSF47113 SSF47113, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiNFYC1_ARATH
AccessioniPrimary (citable) accession number: Q9SMP0
Secondary accession number(s): O23635
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: May 1, 2000
Last modified: September 12, 2018
This is version 119 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again