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Protein

Transcription factor MYB104

Gene

MYB104

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi41 – 65H-T-H motifPROSITE-ProRule annotationAdd BLAST25
DNA bindingi93 – 116H-T-H motifPROSITE-ProRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription factor MYB104
Alternative name(s):
Myb-related protein 104
Short name:
AtMYB104
Gene namesi
Name:MYB104
Ordered Locus Names:At2g26950
ORF Names:T20P8.20
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G26950
TAIRilocus:2039478 AT2G26950

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003588351 – 382Transcription factor MYB104Add BLAST382

Proteomic databases

PaxDbiQ9SM27

Expressioni

Gene expression databases

ExpressionAtlasiQ9SM27 baseline and differential
GenevisibleiQ9SM27 AT

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

BioGridi2588, 1 interactor
STRINGi3702.AT2G26950.1

Structurei

3D structure databases

ProteinModelPortaliQ9SM27
SMRiQ9SM27
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini13 – 69HTH myb-type 1PROSITE-ProRule annotationAdd BLAST57
Domaini70 – 120HTH myb-type 2PROSITE-ProRule annotationAdd BLAST51

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG0048 Eukaryota
COG5147 LUCA
HOGENOMiHOG000006120
InParanoidiQ9SM27
KOiK09422
OMAiREPETTF
OrthoDBiEOG093615UO

Family and domain databases

CDDicd00167 SANT, 2 hits
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017930 Myb_dom
IPR001005 SANT/Myb
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 2 hits
SMARTiView protein in SMART
SM00717 SANT, 2 hits
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 2 hits

Sequencei

Sequence statusi: Complete.

Q9SM27-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MIQDQANDLL AMKKTFTKSK WKPEEDRILK DYVIQYGDRT WTHVPKRTGL
60 70 80 90 100
PHNPASCRFR WMNHLKPSLK KGPFTDEEEK RVLQLHAVLG NKWSQMAREF
110 120 130 140 150
PGRTDNEIKN FWNARRMRLK GKGLPVYPDE VREQAIRTAA QYGVKVELLN
160 170 180 190 200
AHYSQDSLMA GNVEKPQELN NLALNQCSPY YQSTLANVQP SRNRVMEPET
210 220 230 240 250
TFPFTGGSAM NEQNPTLLCN PYVESTQEQL PDSHLFGNVT YSSPPMPLIH
260 270 280 290 300
EVENLELPSF QGFDFHEEPS SFGAEQYNPM LNLEPHNTLV QSPLIGQTPT
310 320 330 340 350
DFPSSFYDEL LDELLESVVN GSLGEIPKTD TSSESQLFQS SLRSHTDATP
360 370 380
DIANTTGYVG SNERNTTNDD DWIRLLLDEG FI
Length:382
Mass (Da):43,513
Last modified:February 22, 2012 - v3
Checksum:i85AAC37ADE7C1927
GO

Sequence cautioni

The sequence AAF13101 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAF18614 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated
The sequence AAF18614 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAM15011 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated
The sequence AAM15011 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti100F → L in AAF13101 (Ref. 1) Curated1
Sequence conflicti184T → M in AAF13101 (Ref. 1) Curated1
Sequence conflicti343R → L in AAF13101 (Ref. 1) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U26934 Genomic DNA Translation: AAF13101.1 Sequence problems.
AC005168 Genomic DNA Translation: AAM15011.1 Sequence problems.
AC005623 Genomic DNA Translation: AAF18614.1 Sequence problems.
CP002685 Genomic DNA Translation: AEC07910.1
DR750464 mRNA No translation available.
PIRiH84666
T02640
RefSeqiNP_180263.5, NM_128252.6
UniGeneiAt.52930

Genome annotation databases

EnsemblPlantsiAT2G26950.1; AT2G26950.1; AT2G26950
GeneIDi817236
GrameneiAT2G26950.1; AT2G26950.1; AT2G26950
KEGGiath:AT2G26950

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U26934 Genomic DNA Translation: AAF13101.1 Sequence problems.
AC005168 Genomic DNA Translation: AAM15011.1 Sequence problems.
AC005623 Genomic DNA Translation: AAF18614.1 Sequence problems.
CP002685 Genomic DNA Translation: AEC07910.1
DR750464 mRNA No translation available.
PIRiH84666
T02640
RefSeqiNP_180263.5, NM_128252.6
UniGeneiAt.52930

3D structure databases

ProteinModelPortaliQ9SM27
SMRiQ9SM27
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi2588, 1 interactor
STRINGi3702.AT2G26950.1

Proteomic databases

PaxDbiQ9SM27

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G26950.1; AT2G26950.1; AT2G26950
GeneIDi817236
GrameneiAT2G26950.1; AT2G26950.1; AT2G26950
KEGGiath:AT2G26950

Organism-specific databases

AraportiAT2G26950
TAIRilocus:2039478 AT2G26950

Phylogenomic databases

eggNOGiKOG0048 Eukaryota
COG5147 LUCA
HOGENOMiHOG000006120
InParanoidiQ9SM27
KOiK09422
OMAiREPETTF
OrthoDBiEOG093615UO

Miscellaneous databases

PROiPR:Q9SM27

Gene expression databases

ExpressionAtlasiQ9SM27 baseline and differential
GenevisibleiQ9SM27 AT

Family and domain databases

CDDicd00167 SANT, 2 hits
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017930 Myb_dom
IPR001005 SANT/Myb
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 2 hits
SMARTiView protein in SMART
SM00717 SANT, 2 hits
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 2 hits
ProtoNetiSearch...

Entry informationi

Entry nameiMY104_ARATH
AccessioniPrimary (citable) accession number: Q9SM27
Secondary accession number(s): F4IVM2, Q9SLH2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: February 22, 2012
Last modified: October 10, 2018
This is version 120 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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