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UniProtKB - Q9SK53 (COL3_ARATH)
Protein
Zinc finger protein CONSTANS-LIKE 3
Gene
COL3
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Functioni
Sites
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Metal bindingi | 8 | Zinc 1PROSITE-ProRule annotation | 1 | |
Metal bindingi | 11 | Zinc 1PROSITE-ProRule annotation | 1 | |
Metal bindingi | 31 | Zinc 1PROSITE-ProRule annotation | 1 | |
Metal bindingi | 36 | Zinc 1PROSITE-ProRule annotation | 1 | |
Metal bindingi | 51 | Zinc 2PROSITE-ProRule annotation | 1 | |
Metal bindingi | 54 | Zinc 2PROSITE-ProRule annotation | 1 | |
Metal bindingi | 74 | Zinc 2PROSITE-ProRule annotation | 1 | |
Metal bindingi | 79 | Zinc 2PROSITE-ProRule annotation | 1 |
Regions
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Zinc fingeri | 8 – 50 | B box-type 1; atypicalPROSITE-ProRule annotationAdd BLAST | 43 | |
Zinc fingeri | 51 – 93 | B box-type 2; atypicalPROSITE-ProRule annotationAdd BLAST | 43 |
GO - Molecular functioni
- DNA-binding transcription factor activity Source: TAIR
- sequence-specific DNA binding Source: TAIR
- transcription cis-regulatory region binding Source: TAIR
- zinc ion binding Source: InterPro
GO - Biological processi
- red light signaling pathway Source: TAIR
- regulation of flower development Source: GO_Central
- regulation of photomorphogenesis Source: TAIR
Keywordsi
Ligand | Metal-binding, Zinc |
Names & Taxonomyi
Protein namesi | Recommended name: Zinc finger protein CONSTANS-LIKE 3 |
Gene namesi | Name:COL3 Ordered Locus Names:At2g24790 ORF Names:F27C12.29 |
Organismi | Arabidopsis thaliana (Mouse-ear cress) |
Taxonomic identifieri | 3702 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Proteomesi |
|
Organism-specific databases
Araporti | AT2G24790 |
TAIRi | locus:2047246, AT2G24790 |
Subcellular locationi
Nucleus
- Nucleus PROSITE-ProRule annotation
Nucleus
- nucleus Source: TAIR
Keywords - Cellular componenti
NucleusPTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000113280 | 1 – 294 | Zinc finger protein CONSTANS-LIKE 3Add BLAST | 294 |
Proteomic databases
PaxDbi | Q9SK53 |
ProteomicsDBi | 240920 [Q9SK53-1] |
Expressioni
Gene expression databases
ExpressionAtlasi | Q9SK53, baseline and differential |
Genevisiblei | Q9SK53, AT |
Interactioni
Binary interactionsi
Q9SK53
With | #Exp. | IntAct |
---|---|---|
COP1 [P43254] | 3 | EBI-1995108,EBI-301649 |
Protein-protein interaction databases
BioGRIDi | 2368, 14 interactors |
IntActi | Q9SK53, 11 interactors |
STRINGi | 3702.AT2G24790.1 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 229 – 271 | CCTPROSITE-ProRule annotationAdd BLAST | 43 |
Sequence similaritiesi
Belongs to the CONSTANS family.Curated
Zinc finger
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Zinc fingeri | 8 – 50 | B box-type 1; atypicalPROSITE-ProRule annotationAdd BLAST | 43 | |
Zinc fingeri | 51 – 93 | B box-type 2; atypicalPROSITE-ProRule annotationAdd BLAST | 43 |
Keywords - Domaini
Repeat, Zinc-fingerPhylogenomic databases
eggNOGi | KOG1601, Eukaryota |
HOGENOMi | CLU_028225_3_2_1 |
InParanoidi | Q9SK53 |
OMAi | ESECHET |
OrthoDBi | 1303650at2759 |
PhylomeDBi | Q9SK53 |
Family and domain databases
InterProi | View protein in InterPro IPR010402, CCT_domain IPR045281, CONSTANS-like IPR000315, Znf_B-box |
PANTHERi | PTHR31319, PTHR31319, 1 hit |
Pfami | View protein in Pfam PF06203, CCT, 1 hit PF00643, zf-B_box, 2 hits |
SMARTi | View protein in SMART SM00336, BBOX, 2 hits |
PROSITEi | View protein in PROSITE PS51017, CCT, 1 hit PS50119, ZF_BBOX, 2 hits |
(1+)i Sequence
Sequence statusi: Complete.
This entry describes 1 produced by isoform ialternative splicing. AlignAdd to basketNote: A number of isoforms are produced. According to EST sequences.
This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All
Isoform 1 (identifier: Q9SK53-1) [UniParc]FASTAAdd to basket
This isoform has been chosen as the sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. canonicali
10 20 30 40 50
MASSSRLCDS CKSTAATLFC RADAAFLCGD CDGKIHTANK LASRHERVWL
60 70 80 90 100
CEVCEQAPAH VTCKADAAAL CVTCDRDIHS ANPLSRRHER VPITPFYDAV
110 120 130 140 150
GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE
160 170 180 190 200
ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
210 220 230 240 250
VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR
260 270 280 290
YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF
Computationally mapped potential isoform sequencesi
There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basketQ3EBU4 | Q3EBU4_ARATH | CONSTANS-like 3 | COL3 ATCOL3, B-box domain protein 4, BBX4, CONSTANS-like 3, At2g24790 | 220 | Annotation score: |
Experimental Info
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Sequence conflicti | 30 | D → N in AAM62947 (Ref. 4) Curated | 1 | |
Sequence conflicti | 286 | G → C in AAM62947 (Ref. 4) Curated | 1 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC006585 Genomic DNA Translation: AAD23033.1 AC007266 Genomic DNA Translation: AAM15476.1 CP002685 Genomic DNA Translation: AEC07629.1 AY058130 mRNA Translation: AAL25546.1 AY140103 mRNA Translation: AAM98244.1 BT002107 mRNA Translation: AAN72118.1 AY085729 mRNA Translation: AAM62947.1 |
PIRi | E84640 |
RefSeqi | NP_180052.1, NM_128038.3 [Q9SK53-1] |
Genome annotation databases
EnsemblPlantsi | AT2G24790.1; AT2G24790.1; AT2G24790 [Q9SK53-1] |
GeneIDi | 817016 |
Gramenei | AT2G24790.1; AT2G24790.1; AT2G24790 [Q9SK53-1] |
KEGGi | ath:AT2G24790 |
Keywords - Coding sequence diversityi
Alternative splicingSimilar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC006585 Genomic DNA Translation: AAD23033.1 AC007266 Genomic DNA Translation: AAM15476.1 CP002685 Genomic DNA Translation: AEC07629.1 AY058130 mRNA Translation: AAL25546.1 AY140103 mRNA Translation: AAM98244.1 BT002107 mRNA Translation: AAN72118.1 AY085729 mRNA Translation: AAM62947.1 |
PIRi | E84640 |
RefSeqi | NP_180052.1, NM_128038.3 [Q9SK53-1] |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
6QTX | X-ray | 1.95 | B | 287-294 | [»] | |
AlphaFoldDBi | Q9SK53 | |||||
SMRi | Q9SK53 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Protein-protein interaction databases
BioGRIDi | 2368, 14 interactors |
IntActi | Q9SK53, 11 interactors |
STRINGi | 3702.AT2G24790.1 |
Proteomic databases
PaxDbi | Q9SK53 |
ProteomicsDBi | 240920 [Q9SK53-1] |
Genome annotation databases
EnsemblPlantsi | AT2G24790.1; AT2G24790.1; AT2G24790 [Q9SK53-1] |
GeneIDi | 817016 |
Gramenei | AT2G24790.1; AT2G24790.1; AT2G24790 [Q9SK53-1] |
KEGGi | ath:AT2G24790 |
Organism-specific databases
Araporti | AT2G24790 |
TAIRi | locus:2047246, AT2G24790 |
Phylogenomic databases
eggNOGi | KOG1601, Eukaryota |
HOGENOMi | CLU_028225_3_2_1 |
InParanoidi | Q9SK53 |
OMAi | ESECHET |
OrthoDBi | 1303650at2759 |
PhylomeDBi | Q9SK53 |
Miscellaneous databases
PROi | PR:Q9SK53 |
Gene expression databases
ExpressionAtlasi | Q9SK53, baseline and differential |
Genevisiblei | Q9SK53, AT |
Family and domain databases
InterProi | View protein in InterPro IPR010402, CCT_domain IPR045281, CONSTANS-like IPR000315, Znf_B-box |
PANTHERi | PTHR31319, PTHR31319, 1 hit |
Pfami | View protein in Pfam PF06203, CCT, 1 hit PF00643, zf-B_box, 2 hits |
SMARTi | View protein in SMART SM00336, BBOX, 2 hits |
PROSITEi | View protein in PROSITE PS51017, CCT, 1 hit PS50119, ZF_BBOX, 2 hits |
MobiDBi | Search... |
Entry informationi
Entry namei | COL3_ARATH | |
Accessioni | Q9SK53Primary (citable) accession number: Q9SK53 Secondary accession number(s): Q7G9K6, Q8LDY3 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | December 5, 2001 |
Last sequence update: | May 1, 2000 | |
Last modified: | May 25, 2022 | |
This is version 139 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Plant Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
3D-structure, Reference proteomeDocuments
- Arabidopsis thaliana
Arabidopsis thaliana: entries and gene names - PDB cross-references
Index of Protein Data Bank (PDB) cross-references - SIMILARITY comments
Index of protein domains and families