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Protein

Transcription factor RAX2

Gene

RAX2

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence.By similarity1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi38 – 62H-T-H motifPROSITE-ProRule annotationAdd BLAST25
DNA bindingi90 – 113H-T-H motifPROSITE-ProRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionActivator, Developmental protein, DNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription factor RAX2
Alternative name(s):
Myb-related protein 38
Short name:
AtMYB38
Protein REGULATOR OF AXILLARY MERISTEMS 2
Gene namesi
Name:RAX2
Synonyms:MYB38
Ordered Locus Names:At2g36890
ORF Names:T1J8.7
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G36890
TAIRilocus:2057931 AT2G36890

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003124321 – 298Transcription factor RAX2Add BLAST298

Proteomic databases

PaxDbiQ9SJL7
PRIDEiQ9SJL7

Expressioni

Tissue specificityi

Ubiquitous, with higher levels in roots, flowers, and shoot tips. Found in all cells of the shoot tips.1 Publication

Gene expression databases

ExpressionAtlasiQ9SJL7 baseline and differential
GenevisibleiQ9SJL7 AT

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
COP1P432543EBI-2292310,EBI-301649

GO - Molecular functioni

Protein-protein interaction databases

BioGridi3606, 1 interactor
IntActiQ9SJL7, 1 interactor
STRINGi3702.AT2G36890.1

Structurei

3D structure databases

ProteinModelPortaliQ9SJL7
SMRiQ9SJL7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini9 – 62HTH myb-type 1PROSITE-ProRule annotationAdd BLAST54
Domaini63 – 117HTH myb-type 2PROSITE-ProRule annotationAdd BLAST55

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG0048 Eukaryota
COG5147 LUCA
HOGENOMiHOG000237600
InParanoidiQ9SJL7
KOiK09422
OMAiHHEEDER
OrthoDBiEOG09360N4I
PhylomeDBiQ9SJL7

Family and domain databases

CDDicd00167 SANT, 2 hits
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017930 Myb_dom
IPR001005 SANT/Myb
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 2 hits
SMARTiView protein in SMART
SM00717 SANT, 2 hits
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 2 hits

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q9SJL7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC
60 70 80 90 100
GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
110 120 130 140 150
TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN
160 170 180 190 200
SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
210 220 230 240 250
SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE
260 270 280 290
DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY
Length:298
Mass (Da):34,057
Last modified:May 1, 2000 - v1
Checksum:i2554D975914869F8
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1P8B126A0A1P8B126_ARATH
Duplicated homeodomain-like superfa...
RAX2 ATMYB38, BIT1, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, MYB38 RAX2 ATMYB38, BIT1, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, MYB38, At2g36890, T1J8.7, T1J8_7
339Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti141S → P in AAS10047 (Ref. 1) Curated1
Sequence conflicti248Missing in AAC83602 (PubMed:9839469).Curated1

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural varianti175G → D in strain: cv. Oy-0. 1 Publication1
Natural varianti188N → K in strain: cv. An-1, cv. Ct-1, cv. Cvi-1 and cv. Wassilewskija. 1 Publication1
Natural varianti244H → D in strain: cv. An-1, cv. Ct-1, cv. Cvi-1 and cv. Wassilewskija. 1 Publication1
Natural varianti256T → S in strain: cv. An-1, cv. Ct-1, cv. Cvi-1 and cv. Wassilewskija. 1 Publication1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY519577 mRNA Translation: AAS10047.1
AC006922 Genomic DNA Translation: AAD31574.1
CP002685 Genomic DNA Translation: AEC09315.1
AF062880 mRNA Translation: AAC83602.1
EF598636 Genomic DNA Translation: ABR09096.1
EF598637 Genomic DNA Translation: ABR09097.1
EF598638 Genomic DNA Translation: ABR09098.1
EF598639 Genomic DNA Translation: ABR09099.1
EF598640 Genomic DNA Translation: ABR09100.1
EF598641 Genomic DNA Translation: ABR09101.1
EF598642 Genomic DNA Translation: ABR09102.1
EF598643 Genomic DNA Translation: ABR09103.1
EF598644 Genomic DNA Translation: ABR09104.1
EF598645 Genomic DNA Translation: ABR09105.1
EF598646 Genomic DNA Translation: ABR09106.1
EF598647 Genomic DNA Translation: ABR09107.1
EF598648 Genomic DNA Translation: ABR09108.1
EF598649 Genomic DNA Translation: ABR09109.1
EF598650 Genomic DNA Translation: ABR09110.1
EF598651 Genomic DNA Translation: ABR09111.1
EF598652 Genomic DNA Translation: ABR09112.1
EF598653 Genomic DNA Translation: ABR09113.1
EF598654 Genomic DNA Translation: ABR09114.1
EF598655 Genomic DNA Translation: ABR09115.1
EF598656 Genomic DNA Translation: ABR09116.1
EF598657 Genomic DNA Translation: ABR09117.1
EF598658 Genomic DNA Translation: ABR09118.1
EF598659 Genomic DNA Translation: ABR09119.1
PIRiH84785
T51652
RefSeqiNP_181226.1, NM_129245.3
UniGeneiAt.37491

Genome annotation databases

EnsemblPlantsiAT2G36890.1; AT2G36890.1; AT2G36890
GeneIDi818262
GrameneiAT2G36890.1; AT2G36890.1; AT2G36890
KEGGiath:AT2G36890

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY519577 mRNA Translation: AAS10047.1
AC006922 Genomic DNA Translation: AAD31574.1
CP002685 Genomic DNA Translation: AEC09315.1
AF062880 mRNA Translation: AAC83602.1
EF598636 Genomic DNA Translation: ABR09096.1
EF598637 Genomic DNA Translation: ABR09097.1
EF598638 Genomic DNA Translation: ABR09098.1
EF598639 Genomic DNA Translation: ABR09099.1
EF598640 Genomic DNA Translation: ABR09100.1
EF598641 Genomic DNA Translation: ABR09101.1
EF598642 Genomic DNA Translation: ABR09102.1
EF598643 Genomic DNA Translation: ABR09103.1
EF598644 Genomic DNA Translation: ABR09104.1
EF598645 Genomic DNA Translation: ABR09105.1
EF598646 Genomic DNA Translation: ABR09106.1
EF598647 Genomic DNA Translation: ABR09107.1
EF598648 Genomic DNA Translation: ABR09108.1
EF598649 Genomic DNA Translation: ABR09109.1
EF598650 Genomic DNA Translation: ABR09110.1
EF598651 Genomic DNA Translation: ABR09111.1
EF598652 Genomic DNA Translation: ABR09112.1
EF598653 Genomic DNA Translation: ABR09113.1
EF598654 Genomic DNA Translation: ABR09114.1
EF598655 Genomic DNA Translation: ABR09115.1
EF598656 Genomic DNA Translation: ABR09116.1
EF598657 Genomic DNA Translation: ABR09117.1
EF598658 Genomic DNA Translation: ABR09118.1
EF598659 Genomic DNA Translation: ABR09119.1
PIRiH84785
T51652
RefSeqiNP_181226.1, NM_129245.3
UniGeneiAt.37491

3D structure databases

ProteinModelPortaliQ9SJL7
SMRiQ9SJL7
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi3606, 1 interactor
IntActiQ9SJL7, 1 interactor
STRINGi3702.AT2G36890.1

Proteomic databases

PaxDbiQ9SJL7
PRIDEiQ9SJL7

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G36890.1; AT2G36890.1; AT2G36890
GeneIDi818262
GrameneiAT2G36890.1; AT2G36890.1; AT2G36890
KEGGiath:AT2G36890

Organism-specific databases

AraportiAT2G36890
TAIRilocus:2057931 AT2G36890

Phylogenomic databases

eggNOGiKOG0048 Eukaryota
COG5147 LUCA
HOGENOMiHOG000237600
InParanoidiQ9SJL7
KOiK09422
OMAiHHEEDER
OrthoDBiEOG09360N4I
PhylomeDBiQ9SJL7

Miscellaneous databases

PROiPR:Q9SJL7

Gene expression databases

ExpressionAtlasiQ9SJL7 baseline and differential
GenevisibleiQ9SJL7 AT

Family and domain databases

CDDicd00167 SANT, 2 hits
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017930 Myb_dom
IPR001005 SANT/Myb
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 2 hits
SMARTiView protein in SMART
SM00717 SANT, 2 hits
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 2 hits
ProtoNetiSearch...

Entry informationi

Entry nameiRAX2_ARATH
AccessioniPrimary (citable) accession number: Q9SJL7
Secondary accession number(s): A5YZ54
, A5YZ55, A5YZ66, Q6R0A1, Q9ZTE4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 4, 2007
Last sequence update: May 1, 2000
Last modified: October 10, 2018
This is version 135 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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