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Entry version 121 (08 May 2019)
Sequence version 1 (01 May 2000)
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Protein

Protein CHROMATIN REMODELING 35

Gene

DRD1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Subunit of the chromatin-remodeling complex (DDR complex) that mediates RNA polymerases IV and V (Pol IV and Pol V) recruitment to chromatin (PubMed:19013275, PubMed:22864289). Cooperates with Pol IV and Pol V to regulates RNA- and RNAi- (RNA interference) directed non-CpG de novo DNA methylation on cytosine of genes targeted for silencing and enhancers, also known as siRNA-directed DNA methylation (RdDM), thus leading to epigenetic modification of the genome and promoting/maintaining heterochromatin (PubMed:15120073, PubMed:15947783, PubMed:15924141, PubMed:16724114, PubMed:16741558, PubMed:19204117, PubMed:19825647, PubMed:22647529, PubMed:18425128). In collaboration with Pol V, mediates/maintains, in cis, methylation-associated self-silencing of exogenous transgene transcribing inverted-repeat (exo-IR) silencer (exo-Pdsi) to restrain exo-IR dsRNA accumulation and subsequent inappropriate silencing of active protein-coding genes (e.g. PDS) by exo-IR-derivating 24-nt siRNAs (PubMed:21771120). Also required to mediate loss of CpG methylation when the silencing inducer is withdrawn (PubMed:15947783). Required for the maintenance of retrotransposon large terminal repeats (LTRs) and transposable elements (TE) edges silencing mediated by cytosine methylation (PubMed:16724114, PubMed:23540698). Required for transcriptional repression of specific classes of pericentromeric 180-bp repeats by promoting condensation and histone H3 lysine 9 dimethylation (H3K9me2) at chromocenters (PubMed:19825650). Required for basal resistance against the necrotrophic fungal pathogen Plectosphaerella cucumerina (PubMed:22242006).15 Publications

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes a region in the protein which binds nucleotide phosphates. It always involves more than one amino acid and includes all residues involved in nucleotide-binding.<p><a href='/help/np_bind' target='_top'>More...</a></p>Nucleotide bindingi377 – 384ATPPROSITE-ProRule annotation8

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-binding, Helicase, Hydrolase
Biological processPlant defense, RNA-mediated gene silencing
LigandATP-binding, Nucleotide-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Protein CHROMATIN REMODELING 352 Publications
Alternative name(s):
Protein DEFECTIVE IN MERISTEM SILENCING 11 Publication
Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 11 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:DRD11 Publication
Synonyms:CHR352 Publications, DMS11 Publication
Ordered Locus Names:At2g16390Imported
ORF Names:F16F14.11Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT2G16390

The Arabidopsis Information Resource

More...
TAIRi
locus:2042619 AT2G16390

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the ‘Pathology and Biotech’ section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Reduced association of NRPE1 with chromatin, leading to altered chromatin binding of the DDR complex (PubMed:19013275, PubMed:22864289). Defective in RNA-directed non-CpG DNA methylation resulting in reactivation of silenced genes and enhancers, whereas methylation of centromeric and rDNA repeats is unaffected (PubMed:15120073, PubMed:15947783, PubMed:15924141, PubMed:16741558, PubMed:19825647, PubMed:18425128). Reduced accumulation of 24-nt siRNAs and reduced DNA methylation of siRNA-directed DNA methylation (RdDM) target loci (PubMed:19204117, PubMed:22647529). Increase in CpG DNA methylation leading to abnormal maintenance of some silenced genes (PubMed:15947783). Derepression of solo retrotransposon large terminal repeats (LTRs) and of transposable elements (TE) edges accompanied by reduced cytosine methylation and transcriptional up-regulation of neighboring sequences, and associated with euchromatic histone modifications but little or no H3K9 dimethylation. By contrast, LTRs of retrotransposons that remain silent in disrupted plants despite reduced cytosine methylation lack euchromatic marks and have H3K9 dimethylation (PubMed:16724114, PubMed:23540698). Decondensation of the major pericentromeric repeats and depletion of the heterochromatic mark histone H3 lysine 9 dimethylation (H3K9me2) at chromocenters, leading to transcriptional reactivation of specific classes of pericentromeric 180-bp repeats and reduced heterochromatin (PubMed:19825650). Relieved exo-Pdsi self-silencing resulting in accumulation of dsRNA and Pdsi-derivating 21-nt mobile siRNAs which increase non-cell-autonomous silencing of endo-PDS in neighboring cells (PubMed:21771120). Increases susceptibility to the necrotrophic fungal pathogen Plectosphaerella cucumerina (PubMed:22242006).15 Publications

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/manual/pathology_and_biotech_section">'Pathology and Biotech'</a> section describes the effect of the experimental mutation of one or more amino acid(s) on the biological properties of the protein.<p><a href='/help/mutagen' target='_top'>More...</a></p>Mutagenesisi357G → E in drd1-3; defective in RNA-directed non-CpG DNA methylation. 1 Publication1
Mutagenesisi494G → R in drd1-1; defective in RNA-directed non-CpG DNA methylation. 1 Publication1
Mutagenesisi807R → Q in drd1-2; defective in RNA-directed non-CpG DNA methylation. 1 Publication1
Mutagenesisi810R → Q in drd1-5; defective in RNA-directed non-CpG DNA methylation. 1 Publication1

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004336341 – 888Protein CHROMATIN REMODELING 35Add BLAST888

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9SIW2

PRoteomics IDEntifications database

More...
PRIDEi
Q9SIW2

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q9SIW2

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q9SIW2 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q9SIW2 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Part of the chromatin-remodeling complex (DDR complex) that contains at least DRD1, DMS3 and RDM1. The DDR complex recruits/activates the RNA polymerases V and acts during siRNA-directed DNA methylation (RdDM) (PubMed:20409711, PubMed:22864289). Interacts with SUVH2 (PubMed:24463519, PubMed:24465213).4 Publications

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3702.AT2G16390.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini364 – 541Helicase ATP-bindingPROSITE-ProRule annotationAdd BLAST178
Domaini701 – 866Helicase C-terminalPROSITE-ProRule annotationAdd BLAST166

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a short (usually not more than 20 amino acids) conserved sequence motif of biological significance.<p><a href='/help/motif' target='_top'>More...</a></p>Motifi17 – 24Nuclear localization signal 1PROSITE-ProRule annotation8
Motifi305 – 312Nuclear localization signal 2PROSITE-ProRule annotation8
Motifi492 – 495DEAH boxPROSITE-ProRule annotation4

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi111 – 119Asp-richPROSITE-ProRule annotation9

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the helicase family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0390 Eukaryota
COG0553 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000029425

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q9SIW2

KEGG Orthology (KO)

More...
KOi
K10875

Identification of Orthologs from Complete Genome Data

More...
OMAi
YYGQNAP

Database of Orthologous Groups

More...
OrthoDBi
289049at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9SIW2

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00079 HELICc, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.40.50.10810, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR038718 SNF2-like_sf
IPR000330 SNF2_N

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00271 Helicase_C, 1 hit
PF00176 SNF2_N, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540 SSF52540, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q9SIW2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGFVYIVMTG YYKNVHKRKQ NQVDDGPEAK RVKSSAKVID YSNPFAVSNM
60 70 80 90 100
LEALDSGKFG SVSKELEEIA DMRMDLVKRS IWLYPSLAYT VFEAEKTMDN
110 120 130 140 150
QQVVEGVINL DDDDDDDTDV EKKALCVVPS SSEIVLLDSD DEDNERQRPM
160 170 180 190 200
YQFQSTLVQH QKNQGDVTPL IPQCSFEEVD LGRGKEMPSA IKAIVEGQTS
210 220 230 240 250
RGKVLPIENG VVNEKGVYVG VEEDDSDNES EAADEDLGNI WNEMALSIEC
260 270 280 290 300
SKDVARETSH KEKADVVEDC EHSFILKDDM GYVCRVCGVI EKSILEIIDV
310 320 330 340 350
QFTKAKRNTR TYASETRTKR FGESDNELKF SEEGLMIGGL AAHPTHAAEM
360 370 380 390 400
KPHQIEGFQF LCSNLVADDP GGCIMAHAPG SGKTFMIISF MQSFLAKYPQ
410 420 430 440 450
AKPLVVLPKG ILPTWKKEFV RWQVEDIPLL DFYSAKAENR AQQLSILKQW
460 470 480 490 500
MEKKSILFLG YQQFSTIVCD DTTDSLSCQE ILLKVPSILI LDEGHTPRNE
510 520 530 540 550
DTNLLQSLAQ VQTPRKVVLS GTLYQNHVKE VFNILNLVRP KFLKLDTSKS
560 570 580 590 600
AVKRILAYTP CDVRGRLTGS NSDMASMFNE TVEHTLQKSE DFTVKIKVIQ
610 620 630 640 650
DLREMTKKVL HYYKGDFLDE LPGLADFTVV LNLSPKQLNE VKKLRREKRK
660 670 680 690 700
FKVSAVGSAI YLHPKLKVFS DKSDDVSDTT MDEMVEKLDL NEGVKAKFFL
710 720 730 740 750
NLINLCDSAG EKLLVFSQYL IPLKFLERLA ALAKGWKLGK EVFVLTGNTS
760 770 780 790 800
SEQREWSMET FNSSPDAKIF FGSIKACGEG ISLVGASRIL ILDVPLNPSV
810 820 830 840 850
TRQAIGRAFR PGQKKMVHAY RLIAGSSPEE EDHNTCFKKE VISKMWFEWN
860 870 880
EYCGYQNFEV ETIDVDEAGD TFLESPALRE DIRVLYKR
Length:888
Mass (Da):100,229
Last modified:May 1, 2000 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iD304DE3D5E593430
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A178VR01A0A178VR01_ARATH
SNF2 domain-containing protein / he...
DRD1 CHR35, DMS1, At2g16390, F16F14.11, F16F14_11
891Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC007047 Genomic DNA Translation: AAD22300.1
CP002685 Genomic DNA Translation: AEC06492.1

Protein sequence database of the Protein Information Resource

More...
PIRi
G84539

NCBI Reference Sequences

More...
RefSeqi
NP_179232.1, NM_127193.2

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT2G16390.1; AT2G16390.1; AT2G16390

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
816136

Gramene; a comparative resource for plants

More...
Gramenei
AT2G16390.1; AT2G16390.1; AT2G16390

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT2G16390

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC007047 Genomic DNA Translation: AAD22300.1
CP002685 Genomic DNA Translation: AEC06492.1
PIRiG84539
RefSeqiNP_179232.1, NM_127193.2

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi3702.AT2G16390.1

PTM databases

iPTMnetiQ9SIW2

Proteomic databases

PaxDbiQ9SIW2
PRIDEiQ9SIW2

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G16390.1; AT2G16390.1; AT2G16390
GeneIDi816136
GrameneiAT2G16390.1; AT2G16390.1; AT2G16390
KEGGiath:AT2G16390

Organism-specific databases

AraportiAT2G16390
TAIRilocus:2042619 AT2G16390

Phylogenomic databases

eggNOGiKOG0390 Eukaryota
COG0553 LUCA
HOGENOMiHOG000029425
InParanoidiQ9SIW2
KOiK10875
OMAiYYGQNAP
OrthoDBi289049at2759
PhylomeDBiQ9SIW2

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q9SIW2

Gene expression databases

ExpressionAtlasiQ9SIW2 baseline and differential
GenevisibleiQ9SIW2 AT

Family and domain databases

CDDicd00079 HELICc, 1 hit
Gene3Di3.40.50.10810, 1 hit
InterProiView protein in InterPro
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR038718 SNF2-like_sf
IPR000330 SNF2_N
PfamiView protein in Pfam
PF00271 Helicase_C, 1 hit
PF00176 SNF2_N, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SUPFAMiSSF52540 SSF52540, 2 hits
PROSITEiView protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiCHR35_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9SIW2
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 16, 2015
Last sequence update: May 1, 2000
Last modified: May 8, 2019
This is version 121 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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