UniProtKB - Q9SIK2 (RS252_ARATH)
Protein
40S ribosomal protein S25-2
Gene
RPS25B
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Functioni
GO - Molecular functioni
- mRNA binding Source: TAIR
- structural constituent of ribosome Source: CAFA
Keywordsi
Molecular function | Ribonucleoprotein, Ribosomal protein |
Names & Taxonomyi
Protein namesi | Recommended name: 40S ribosomal protein S25-2 |
Gene namesi | Name:RPS25B Ordered Locus Names:At2g21580 ORF Names:F2G1.15 |
Organismi | Arabidopsis thaliana (Mouse-ear cress) |
Taxonomic identifieri | 3702 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Proteomesi |
|
Organism-specific databases
Araporti | AT2G21580 |
TAIRi | locus:2049369, AT2G21580 |
Subcellular locationi
Cytosol
- cytosolic ribosome Source: TAIR
- cytosolic small ribosomal subunit Source: TAIR
Vacuole
- vacuolar membrane Source: TAIR
- vacuole Source: TAIR
Other locations
- plasmodesma Source: TAIR
- polysomal ribosome Source: CAFA
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000192882 | 1 – 108 | 40S ribosomal protein S25-2Add BLAST | 108 |
Proteomic databases
PaxDbi | Q9SIK2 |
PRIDEi | Q9SIK2 |
ProteomicsDBi | 237012 [Q9SIK2-1] |
PTM databases
iPTMneti | Q9SIK2 |
MetOSitei | Q9SIK2 |
Expressioni
Gene expression databases
ExpressionAtlasi | Q9SIK2, baseline and differential |
Genevisiblei | Q9SIK2, AT |
Interactioni
Protein-protein interaction databases
BioGRIDi | 2049, 3 interactors |
STRINGi | 3702.AT2G21580.1 |
Family & Domainsi
Sequence similaritiesi
Belongs to the eukaryotic ribosomal protein eS25 family.Curated
Phylogenomic databases
eggNOGi | KOG1767, Eukaryota |
HOGENOMi | CLU_129470_0_1_1 |
InParanoidi | Q9SIK2 |
PhylomeDBi | Q9SIK2 |
Family and domain databases
InterProi | View protein in InterPro IPR004977, Ribosomal_S25 |
PANTHERi | PTHR12850, PTHR12850, 1 hit |
Pfami | View protein in Pfam PF03297, Ribosomal_S25, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
This entry describes 1 produced by isoform ialternative splicing. AlignAdd to basketNote: A number of isoforms are produced. According to EST sequences.
This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All
Isoform 1 (identifier: Q9SIK2-1) [UniParc]FASTAAdd to basket
This isoform has been chosen as the sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. canonicali
10 20 30 40 50
MAPKKDKVPP PSSKPAKSGG GKQKKKKWSK GKQKEKVNNM VLFDQGTYDK
60 70 80 90 100
LLTEAPKFKL ITPSILSDRM RINGSLARRA IRELMAKGLI RMVSAHSSQQ
IYTRATNT
Computationally mapped potential isoform sequencesi
There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basketF4IHJ8 | F4IHJ8_ARATH | 40S ribosomal protein S25 | At2g21580, F2G1.15, F2G1_15 | 107 | Annotation score: |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC007119 Genomic DNA Translation: AAD23647.1 CP002685 Genomic DNA Translation: AEC07197.1 AY048211 mRNA Translation: AAK82474.1 AY091695 mRNA Translation: AAM10294.1 |
PIRi | H84602 |
RefSeqi | NP_179752.1, NM_127729.4 [Q9SIK2-1] |
Genome annotation databases
EnsemblPlantsi | AT2G21580.1; AT2G21580.1; AT2G21580 [Q9SIK2-1] |
GeneIDi | 816696 |
Gramenei | AT2G21580.1; AT2G21580.1; AT2G21580 [Q9SIK2-1] |
KEGGi | ath:AT2G21580 |
Keywords - Coding sequence diversityi
Alternative splicingSimilar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC007119 Genomic DNA Translation: AAD23647.1 CP002685 Genomic DNA Translation: AEC07197.1 AY048211 mRNA Translation: AAK82474.1 AY091695 mRNA Translation: AAM10294.1 |
PIRi | H84602 |
RefSeqi | NP_179752.1, NM_127729.4 [Q9SIK2-1] |
3D structure databases
SMRi | Q9SIK2 |
ModBasei | Search... |
Protein-protein interaction databases
BioGRIDi | 2049, 3 interactors |
STRINGi | 3702.AT2G21580.1 |
PTM databases
iPTMneti | Q9SIK2 |
MetOSitei | Q9SIK2 |
Proteomic databases
PaxDbi | Q9SIK2 |
PRIDEi | Q9SIK2 |
ProteomicsDBi | 237012 [Q9SIK2-1] |
Genome annotation databases
EnsemblPlantsi | AT2G21580.1; AT2G21580.1; AT2G21580 [Q9SIK2-1] |
GeneIDi | 816696 |
Gramenei | AT2G21580.1; AT2G21580.1; AT2G21580 [Q9SIK2-1] |
KEGGi | ath:AT2G21580 |
Organism-specific databases
Araporti | AT2G21580 |
TAIRi | locus:2049369, AT2G21580 |
Phylogenomic databases
eggNOGi | KOG1767, Eukaryota |
HOGENOMi | CLU_129470_0_1_1 |
InParanoidi | Q9SIK2 |
PhylomeDBi | Q9SIK2 |
Miscellaneous databases
PROi | PR:Q9SIK2 |
Gene expression databases
ExpressionAtlasi | Q9SIK2, baseline and differential |
Genevisiblei | Q9SIK2, AT |
Family and domain databases
InterProi | View protein in InterPro IPR004977, Ribosomal_S25 |
PANTHERi | PTHR12850, PTHR12850, 1 hit |
Pfami | View protein in Pfam PF03297, Ribosomal_S25, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | RS252_ARATH | |
Accessioni | Q9SIK2Primary (citable) accession number: Q9SIK2 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | May 9, 2003 |
Last sequence update: | May 1, 2000 | |
Last modified: | December 2, 2020 | |
This is version 124 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Plant Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Arabidopsis thaliana
Arabidopsis thaliana: entries and gene names - SIMILARITY comments
Index of protein domains and families - Ribosomal proteins
Ribosomal proteins families and list of entries