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Entry version 142 (02 Jun 2021)
Sequence version 2 (01 Jun 2002)
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Protein

Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase

Gene

PAT

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Prokaryotic-type aspartate aminotransferase. Has also a prenate transaminase activity. Involved in the aromatic amino acids biosynthesis pathway via the arogenate route. Required for the transamination of prephenate into arogenate. Required for early development of the embryo.

3 Publications

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>This subsection of the 'Function' section provides information relevant to cofactors. A cofactor is any non-protein substance required for a protein to be catalytically active. Some cofactors are inorganic, such as the metal atoms zinc, iron, and copper in various oxidation states. Others, such as most vitamins, are organic.<p><a href='/help/cofactor' target='_top'>More...</a></p>Cofactori

pyridoxal 5'-phosphateBy similarity

<p>This subsection of the 'Function' section describes biophysical and chemical properties, such as maximal absorption, kinetic parameters, pH dependence, redox potentials and temperature dependence.<p><a href='/help/biophysicochemical_properties' target='_top'>More...</a></p>Kineticsi

  1. KM=12 mM for aspartate for the asparte aminotransferase activity2 Publications
  2. KM=5.6 mM for glutamate for the asparte aminotransferase activity2 Publications
  3. KM=25 µM for oxaloacetate for the asparte aminotransferase activity2 Publications
  4. KM=200 µM for 2-oxoglutarate for the asparte aminotransferase activity2 Publications
  5. KM=14 µM for prephenate for the prephenate aminotransferase activity2 Publications
  6. KM=1.5 mM for glutamate for the prephenate aminotransferase activity2 Publications
  7. KM=2.2 mM for aspartate for the prephenate aminotransferase activity2 Publications
  8. KM=355 µM for prephenate (for the recombinant enzyme with 20 mM aspartate as cosubstrate)2 Publications
  9. KM=684 µM for prephenate (for the recombinant enzyme with 20 mM glutamate as cosubstrate)2 Publications
  10. KM=691 µM for 2-oxoglutarate (for the recombinant enzyme with 20 mM aspartate as cosubstrate)2 Publications
  11. KM=2.69 mM for glutamate (for the recombinant enzyme with 3 mM prephenate as cosubstrate)2 Publications
  12. KM=2.84 mM for aspartate (for the recombinant enzyme with 3 mM prephenate as cosubstrate)2 Publications
  13. KM=8.22 mM for oxaloacetate (for the recombinant enzyme with 20 mM glutamate as cosubstrate)2 Publications
  1. Vmax=88 nmol/sec/mg enzyme toward prephenate with 20 mM aspartate as cosubstrate2 Publications
  2. Vmax=173 nmol/sec/mg enzyme toward prephenate with 20 mM glutamate as cosubstrate2 Publications
  3. Vmax=325 nmol/sec/mg enzyme toward 2-oxoglutarate with 20 mM aspartate as cosubstrate2 Publications
  4. Vmax=90 nmol/sec/mg enzyme toward glutamate with 3 mM prephenate as cosubstrate2 Publications
  5. Vmax=70 nmol/sec/mg enzyme toward aspartate with 3 mM prephenate as cosubstrate2 Publications
  6. Vmax=3.29 µmol/sec/mg enzyme toward oxaloacetate with 20 mM glutamate as cosubstrate2 Publications

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section describes the metabolic pathway(s) associated with a protein.<p><a href='/help/pathway' target='_top'>More...</a></p>Pathwayi: L-phenylalanine biosynthesis

This protein is involved in step 1 of the subpathway that synthesizes L-arogenate from prephenate (L-Asp route). This subpathway is part of the pathway L-phenylalanine biosynthesis, which is itself part of Amino-acid biosynthesis.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes L-arogenate from prephenate (L-Asp route), the pathway L-phenylalanine biosynthesis and in Amino-acid biosynthesis.

Pathwayi: L-phenylalanine biosynthesis

This protein is involved in step 1 of the subpathway that synthesizes L-arogenate from prephenate (L-Glu route). This subpathway is part of the pathway L-phenylalanine biosynthesis, which is itself part of Amino-acid biosynthesis.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes L-arogenate from prephenate (L-Glu route), the pathway L-phenylalanine biosynthesis and in Amino-acid biosynthesis.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the interaction between a single amino acid and another chemical entity. Priority is given to the annotation of physiological ligands.<p><a href='/help/binding' target='_top'>More...</a></p>Binding sitei107Aspartate; via amide nitrogenBy similarity1
Binding sitei193AspartateBy similarity1
Binding sitei243AspartateBy similarity1
Binding sitei445AspartateBy similarity1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionAminotransferase, Transferase
Biological processAmino-acid biosynthesis
LigandPyridoxal phosphate

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
ARA:AT2G22250-MONOMER

BRENDA Comprehensive Enzyme Information System

More...
BRENDAi
2.6.1.1, 399
2.6.1.78, 399
2.6.1.79, 399

SABIO-RK: Biochemical Reaction Kinetics Database

More...
SABIO-RKi
Q9SIE1

UniPathway: a resource for the exploration and annotation of metabolic pathways

More...
UniPathwayi
UPA00121;UER00342
UPA00121;UER00343

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase (EC:2.6.1.1, EC:2.6.1.78, EC:2.6.1.79)
Short name:
AtAAT
Short name:
AtPPA-AT
Alternative name(s):
Protein MATERNAL EFFECT EMBRYO ARREST 17
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:PAT
Synonyms:AAT, MEE17
Ordered Locus Names:At2g22250
ORF Names:T26C19.9
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT2G22250

The Arabidopsis Information Resource

More...
TAIRi
locus:2060435, AT2G22250

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Chloroplast, Plastid

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a transit peptide.<p><a href='/help/transit' target='_top'>More...</a></p>Transit peptidei1 – 55ChloroplastCuratedAdd BLAST55
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000040147556 – 475Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferaseAdd BLAST420

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei306N6-(pyridoxal phosphate)lysineBy similarity1

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9SIE1

PRoteomics IDEntifications database

More...
PRIDEi
Q9SIE1

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
248639 [Q9SIE1-1]

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q9SIE1, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q9SIE1, AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Homodimer.

By similarity

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3702.AT2G22250.2

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

1475
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
Q9SIE1

Database of comparative protein structure models

More...
ModBasei
Search...

Protein Data Bank in Europe - Knowledge Base

More...
PDBe-KBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Keywords - Domaini

Transit peptide

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
KOG0257, Eukaryota

InParanoid: Eukaryotic Ortholog Groups

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InParanoidi
Q9SIE1

Database of Orthologous Groups

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OrthoDBi
683031at2759

Database for complete collections of gene phylogenies

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PhylomeDBi
Q9SIE1

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.40.640.10, 1 hit
3.90.1150.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR004839, Aminotransferase_I/II
IPR004838, NHTrfase_class1_PyrdxlP-BS
IPR015424, PyrdxlP-dep_Trfase
IPR015422, PyrdxlP-dep_Trfase_dom1
IPR015421, PyrdxlP-dep_Trfase_major

Pfam protein domain database

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Pfami
View protein in Pfam
PF00155, Aminotran_1_2, 1 hit

Superfamily database of structural and functional annotation

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SUPFAMi
SSF53383, SSF53383, 1 hit

PROSITE; a protein domain and family database

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PROSITEi
View protein in PROSITE
PS00105, AA_TRANSFER_CLASS_1, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (2)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket
Isoform 1 (identifier: Q9SIE1-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MASQSSVAVI SSAAARGESF PDSKKPIGSV RFQQPLRLSF SYCKSGNMSS
60 70 80 90 100
RICAMAKPND AETLSSSVDM SLSPRVQSLK PSKTMVITDL AATLVQSGVP
110 120 130 140 150
VIRLAAGEPD FDTPKVVAEA GINAIREGFT RYTLNAGITE LREAICRKLK
160 170 180 190 200
EENGLSYAPD QILVSNGAKQ SLLQAVLAVC SPGDEVIIPA PYWVSYTEQA
210 220 230 240 250
RLADATPVVI PTKISNNFLL DPKDLESKLT EKSRLLILCS PSNPTGSVYP
260 270 280 290 300
KSLLEEIARI IAKHPRLLVL SDEIYEHIIY APATHTSFAS LPDMYERTLT
310 320 330 340 350
VNGFSKAFAM TGWRLGYLAG PKHIVAACSK LQGQVSSGAS SIAQKAGVAA
360 370 380 390 400
LGLGKAGGET VAEMVKAYRE RRDFLVKSLG DIKGVKISEP QGAFYLFIDF
410 420 430 440 450
SAYYGSEAEG FGLINDSSSL ALYFLDKFQV AMVPGDAFGD DSCIRISYAT
460 470
SLDVLQAAVE KIRKALEPLR ATVSV
Length:475
Mass (Da):51,000
Last modified:June 1, 2002 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i5F17130EE2533B38
GO
Isoform 2 (identifier: Q9SIE1-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-47: Missing.

Show »
Length:428
Mass (Da):46,039
Checksum:i32EB3DF4D46B56D3
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti80K → R in BX820081 (PubMed:14993207).Curated1
Sequence conflicti87I → M in BX820081 (PubMed:14993207).Curated1
Sequence conflicti230T → S in BX820081 (PubMed:14993207).Curated1
Sequence conflicti290S → P in BX820081 (PubMed:14993207).Curated1
Sequence conflicti305S → L in BX820081 (PubMed:14993207).Curated1
Sequence conflicti331L → S in BX820081 (PubMed:14993207).Curated1
Sequence conflicti374F → L in BX820081 (PubMed:14993207).Curated1
Sequence conflicti394F → L in BX820081 (PubMed:14993207).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0401911 – 47Missing in isoform 2. 1 PublicationAdd BLAST47

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
HM638413 mRNA Translation: ADM67558.1
AC007168 Genomic DNA Translation: AAD23617.2
CP002685 Genomic DNA Translation: AEC07283.1
CP002685 Genomic DNA Translation: AEC07284.1
CP002685 Genomic DNA Translation: AEC07285.1
AY064152 mRNA Translation: AAL36058.1
AY124811 mRNA Translation: AAM70520.1
AY084599 mRNA Translation: AAM61164.1
BX820081 mRNA No translation available.

Protein sequence database of the Protein Information Resource

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PIRi
E84610

NCBI Reference Sequences

More...
RefSeqi
NP_001031394.1, NM_001036317.1 [Q9SIE1-1]
NP_565529.1, NM_127791.3 [Q9SIE1-1]
NP_850022.1, NM_179691.4 [Q9SIE1-2]

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT2G22250.1; AT2G22250.1; AT2G22250 [Q9SIE1-2]
AT2G22250.2; AT2G22250.2; AT2G22250 [Q9SIE1-1]
AT2G22250.3; AT2G22250.3; AT2G22250 [Q9SIE1-1]

Database of genes from NCBI RefSeq genomes

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GeneIDi
816758

Gramene; a comparative resource for plants

More...
Gramenei
AT2G22250.1; AT2G22250.1; AT2G22250 [Q9SIE1-2]
AT2G22250.2; AT2G22250.2; AT2G22250 [Q9SIE1-1]
AT2G22250.3; AT2G22250.3; AT2G22250 [Q9SIE1-1]

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT2G22250

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HM638413 mRNA Translation: ADM67558.1
AC007168 Genomic DNA Translation: AAD23617.2
CP002685 Genomic DNA Translation: AEC07283.1
CP002685 Genomic DNA Translation: AEC07284.1
CP002685 Genomic DNA Translation: AEC07285.1
AY064152 mRNA Translation: AAL36058.1
AY124811 mRNA Translation: AAM70520.1
AY084599 mRNA Translation: AAM61164.1
BX820081 mRNA No translation available.
PIRiE84610
RefSeqiNP_001031394.1, NM_001036317.1 [Q9SIE1-1]
NP_565529.1, NM_127791.3 [Q9SIE1-1]
NP_850022.1, NM_179691.4 [Q9SIE1-2]

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

More...
RCSB PDBi

Protein Data Bank Japan

More...
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5WMHX-ray3.00A/B/C/D/E/F1-475[»]
5WMIX-ray2.00A1-475[»]
5WMKX-ray1.40A1-475[»]
5WMLX-ray2.10A/B1-475[»]
6F5VX-ray1.70A/B/C/D1-475[»]
SMRiQ9SIE1
ModBaseiSearch...
PDBe-KBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G22250.2

Proteomic databases

PaxDbiQ9SIE1
PRIDEiQ9SIE1
ProteomicsDBi248639 [Q9SIE1-1]

Genome annotation databases

EnsemblPlantsiAT2G22250.1; AT2G22250.1; AT2G22250 [Q9SIE1-2]
AT2G22250.2; AT2G22250.2; AT2G22250 [Q9SIE1-1]
AT2G22250.3; AT2G22250.3; AT2G22250 [Q9SIE1-1]
GeneIDi816758
GrameneiAT2G22250.1; AT2G22250.1; AT2G22250 [Q9SIE1-2]
AT2G22250.2; AT2G22250.2; AT2G22250 [Q9SIE1-1]
AT2G22250.3; AT2G22250.3; AT2G22250 [Q9SIE1-1]
KEGGiath:AT2G22250

Organism-specific databases

AraportiAT2G22250
TAIRilocus:2060435, AT2G22250

Phylogenomic databases

eggNOGiKOG0257, Eukaryota
InParanoidiQ9SIE1
OrthoDBi683031at2759
PhylomeDBiQ9SIE1

Enzyme and pathway databases

UniPathwayiUPA00121;UER00342
UPA00121;UER00343
BioCyciARA:AT2G22250-MONOMER
BRENDAi2.6.1.1, 399
2.6.1.78, 399
2.6.1.79, 399
SABIO-RKiQ9SIE1

Miscellaneous databases

Protein Ontology

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PROi
PR:Q9SIE1

Gene expression databases

ExpressionAtlasiQ9SIE1, baseline and differential
GenevisibleiQ9SIE1, AT

Family and domain databases

Gene3Di3.40.640.10, 1 hit
3.90.1150.10, 1 hit
InterProiView protein in InterPro
IPR004839, Aminotransferase_I/II
IPR004838, NHTrfase_class1_PyrdxlP-BS
IPR015424, PyrdxlP-dep_Trfase
IPR015422, PyrdxlP-dep_Trfase_dom1
IPR015421, PyrdxlP-dep_Trfase_major
PfamiView protein in Pfam
PF00155, Aminotran_1_2, 1 hit
SUPFAMiSSF53383, SSF53383, 1 hit
PROSITEiView protein in PROSITE
PS00105, AA_TRANSFER_CLASS_1, 1 hit

MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPAT_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9SIE1
Secondary accession number(s): E9L7A7
, Q3E6N9, Q8LFX1, Q8VZI1
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 30, 2010
Last sequence update: June 1, 2002
Last modified: June 2, 2021
This is version 142 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  4. SIMILARITY comments
    Index of protein domains and families
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