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Protein

Pentatricopeptide repeat-containing protein At2g03880, mitochondrial

Gene

PCMP-H44

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • RNA modification Source: TAIR

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At2g03880, mitochondrial
Gene namesi
Name:PCMP-H44
Ordered Locus Names:At2g03880
ORF Names:T18C20.8
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G03880
TAIRilocus:2056794 AT2G03880

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 76MitochondrionSequence analysisAdd BLAST76
ChainiPRO_000035600777 – 630Pentatricopeptide repeat-containing protein At2g03880, mitochondrialAdd BLAST554

Proteomic databases

PaxDbiQ9SI53

Expressioni

Gene expression databases

ExpressionAtlasiQ9SI53 baseline and differential
GenevisibleiQ9SI53 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G03880.1

Structurei

3D structure databases

ProteinModelPortaliQ9SI53
SMRiQ9SI53
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati60 – 94PPR 1Add BLAST35
Repeati95 – 125PPR 2Add BLAST31
Repeati126 – 160PPR 3Add BLAST35
Repeati161 – 192PPR 4Add BLAST32
Repeati193 – 223PPR 5Add BLAST31
Repeati224 – 258PPR 6Add BLAST35
Repeati259 – 289PPR 7Add BLAST31
Repeati292 – 322PPR 8Add BLAST31
Repeati323 – 357PPR 9Add BLAST35
Repeati358 – 388PPR 10Add BLAST31
Repeati394 – 424PPR 11Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni429 – 504Type E motifAdd BLAST76
Regioni505 – 535Type E(+) motifAdd BLAST31
Regioni536 – 630Type DYW motifAdd BLAST95

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiQ9SI53
OMAiPDDQGAR
OrthoDBiEOG093604WH
PhylomeDBiQ9SI53

Family and domain databases

Gene3Di1.25.40.10, 4 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 2 hits
PF12854 PPR_1, 2 hits
PF13041 PPR_2, 3 hits
SUPFAMiSSF48452 SSF48452, 1 hit
TIGRFAMsiTIGR00756 PPR, 7 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 10 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9SI53-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKSVMSKIKL FRPVVTLRCS YSSTDQTLLL SEFTRLCYQR DLPRAMKAMD
60 70 80 90 100
SLQSHGLWAD SATYSELIKC CISNRAVHEG NLICRHLYFN GHRPMMFLVN
110 120 130 140 150
VLINMYVKFN LLNDAHQLFD QMPQRNVISW TTMISAYSKC KIHQKALELL
160 170 180 190 200
VLMLRDNVRP NVYTYSSVLR SCNGMSDVRM LHCGIIKEGL ESDVFVRSAL
210 220 230 240 250
IDVFAKLGEP EDALSVFDEM VTGDAIVWNS IIGGFAQNSR SDVALELFKR
260 270 280 290 300
MKRAGFIAEQ ATLTSVLRAC TGLALLELGM QAHVHIVKYD QDLILNNALV
310 320 330 340 350
DMYCKCGSLE DALRVFNQMK ERDVITWSTM ISGLAQNGYS QEALKLFERM
360 370 380 390 400
KSSGTKPNYI TIVGVLFACS HAGLLEDGWY YFRSMKKLYG IDPVREHYGC
410 420 430 440 450
MIDLLGKAGK LDDAVKLLNE MECEPDAVTW RTLLGACRVQ RNMVLAEYAA
460 470 480 490 500
KKVIALDPED AGTYTLLSNI YANSQKWDSV EEIRTRMRDR GIKKEPGCSW
510 520 530 540 550
IEVNKQIHAF IIGDNSHPQI VEVSKKLNQL IHRLTGIGYV PETNFVLQDL
560 570 580 590 600
EGEQMEDSLR HHSEKLALAF GLMTLPIEKV IRIRKNLRIC GDCHVFCKLA
610 620 630
SKLEIRSIVI RDPIRYHHFQ DGKCSCGDYW
Length:630
Mass (Da):71,699
Last modified:May 1, 2000 - v1
Checksum:i77AD06B3636C9CEF
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti612D → G in AAO41891 (PubMed:14593172).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC007196 Genomic DNA Translation: AAD24821.1
CP002685 Genomic DNA Translation: AEC05762.1
BT003840 mRNA Translation: AAO41891.1
PIRiC84453
RefSeqiNP_178481.1, NM_126433.4
UniGeneiAt.41363

Genome annotation databases

EnsemblPlantsiAT2G03880.1; AT2G03880.1; AT2G03880
GeneIDi814914
GrameneiAT2G03880.1; AT2G03880.1; AT2G03880
KEGGiath:AT2G03880

Similar proteinsi

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC007196 Genomic DNA Translation: AAD24821.1
CP002685 Genomic DNA Translation: AEC05762.1
BT003840 mRNA Translation: AAO41891.1
PIRiC84453
RefSeqiNP_178481.1, NM_126433.4
UniGeneiAt.41363

3D structure databases

ProteinModelPortaliQ9SI53
SMRiQ9SI53
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G03880.1

Proteomic databases

PaxDbiQ9SI53

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G03880.1; AT2G03880.1; AT2G03880
GeneIDi814914
GrameneiAT2G03880.1; AT2G03880.1; AT2G03880
KEGGiath:AT2G03880

Organism-specific databases

AraportiAT2G03880
TAIRilocus:2056794 AT2G03880

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiQ9SI53
OMAiPDDQGAR
OrthoDBiEOG093604WH
PhylomeDBiQ9SI53

Miscellaneous databases

PROiPR:Q9SI53

Gene expression databases

ExpressionAtlasiQ9SI53 baseline and differential
GenevisibleiQ9SI53 AT

Family and domain databases

Gene3Di1.25.40.10, 4 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 2 hits
PF12854 PPR_1, 2 hits
PF13041 PPR_2, 3 hits
SUPFAMiSSF48452 SSF48452, 1 hit
TIGRFAMsiTIGR00756 PPR, 7 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 10 hits
ProtoNetiSearch...

Entry informationi

Entry nameiPP147_ARATH
AccessioniPrimary (citable) accession number: Q9SI53
Secondary accession number(s): Q84WG8
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: May 1, 2000
Last modified: November 7, 2018
This is version 101 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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