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Entry version 150 (29 Sep 2021)
Sequence version 1 (01 May 2000)
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Protein

Methyl-CpG-binding domain-containing protein 9

Gene

MBD9

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Probable transcriptional regulator that acts as a histone acetyltransferase. Mediates the acetylation of histone H3 and H4 of target loci (e.g. FLC). Involved in an auxin-independent regulation of shoot branching and flowering time.

2 Publications

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section specifies the position(s) and type(s) of zinc fingers within the protein.<p><a href='/help/zn_fing' target='_top'>More...</a></p>Zinc fingeri83 – 133PHD-type 1PROSITE-ProRule annotationAdd BLAST51
Zinc fingeri86 – 131RING-type 1; degenerateAdd BLAST46
Zinc fingeri1287 – 1337PHD-type 2PROSITE-ProRule annotationAdd BLAST51
Zinc fingeri1290 – 1335RING-type 2; degenerateAdd BLAST46

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • histone acetyltransferase activity Source: UniProtKB
  • histone binding Source: UniProtKB
  • metal ion binding Source: UniProtKB-KW
  • methyl-CpG binding Source: TAIR

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-binding, Transferase
Biological processTranscription, Transcription regulation
LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Methyl-CpG-binding domain-containing protein 9 (EC:2.3.1.48)
Short name:
AtMBD9
Short name:
MBD09
Alternative name(s):
Histone acetyl transferase MBD9
Methyl-CpG-binding protein MBD9
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:MBD9
Ordered Locus Names:At3g01460
ORF Names:F4P13.1, T13O15.10
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 3

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT3G01460

The Arabidopsis Information Resource

More...
TAIRi
locus:2096672, AT3G01460

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the 'Pathology and Biotech' section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Over-methylated genomic DNA. Increased shoot branching and reduced transcription of FLC leading to early flowering, associated with a decrease in the acetylation level in histone H3 and H4 of FLC chromatin.2 Publications

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004052851 – 2176Methyl-CpG-binding domain-containing protein 9Add BLAST2176

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9SGH2

PRoteomics IDEntifications database

More...
PRIDEi
Q9SGH2

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
238318 [Q9SGH2-1]

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q9SGH2

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified 'at protein level'.<br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in leaves, buds, flowers and stems.2 Publications

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q9SGH2, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q9SGH2, AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Interacts with histone H4.

GO - Molecular functioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

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BioGRIDi
6465, 3 interactors

STRING: functional protein association networks

More...
STRINGi
3702.AT3G01460.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q9SGH2

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini258 – 327MBDPROSITE-ProRule annotationAdd BLAST70
Domaini403 – 456FYR N-terminalPROSITE-ProRule annotationAdd BLAST54
Domaini550 – 698FYR C-terminalPROSITE-ProRule annotationAdd BLAST149
<p>This subsection of the 'Family and Domains' section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati1098 – 1137PumilioAdd BLAST40
Domaini1157 – 1228BromoAdd BLAST72

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 20DisorderedSequence analysisAdd BLAST20
Regioni28 – 85DisorderedSequence analysisAdd BLAST58
Regioni1472 – 1553DisorderedSequence analysisAdd BLAST82
Regioni1565 – 1595DisorderedSequence analysisAdd BLAST31
Regioni2136 – 2176DisorderedSequence analysisAdd BLAST41

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili491 – 511Sequence analysisAdd BLAST21
Coiled coili1251 – 1273Sequence analysisAdd BLAST23
Coiled coili1410 – 1437Sequence analysisAdd BLAST28
Coiled coili1588 – 1628Sequence analysisAdd BLAST41

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a short (usually not more than 20 amino acids) conserved sequence motif of biological significance.<p><a href='/help/motif' target='_top'>More...</a></p>Motifi914 – 921Nuclear localization signalBy similarity8
Motifi1124 – 1131Nuclear localization signalBy similarity8
Motifi1256 – 1263Nuclear localization signalBy similarity8
Motifi1337 – 1344Nuclear localization signalBy similarity8
Motifi1761 – 1768Nuclear localization signalBy similarity8

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1487 – 1532Polar residuesSequence analysisAdd BLAST46
Compositional biasi1566 – 1595Polar residuesSequence analysisAdd BLAST30
Compositional biasi2158 – 2176Basic and acidic residuesSequence analysisAdd BLAST19

<p>This subsection of the 'Family and domains' section provides general information on the biological role of a domain. The term 'domain' is intended here in its wide acceptation, it may be a structural domain, a transmembrane region or a functional domain. Several domains are described in this subsection.<p><a href='/help/domain_cc' target='_top'>More...</a></p>Domaini

The methyl-CpG-binding domain (MBD) functions both in binding to methylated DNA and in protein interactions.By similarity

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri83 – 133PHD-type 1PROSITE-ProRule annotationAdd BLAST51
Zinc fingeri86 – 131RING-type 1; degenerateAdd BLAST46
Zinc fingeri1287 – 1337PHD-type 2PROSITE-ProRule annotationAdd BLAST51
Zinc fingeri1290 – 1335RING-type 2; degenerateAdd BLAST46

Keywords - Domaini

Bromodomain, Coiled coil, Repeat, Zinc-finger

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG502QW8S, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_234476_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q9SGH2

Identification of Orthologs from Complete Genome Data

More...
OMAi
WTYYETE

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9SGH2

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.20.920.10, 1 hit
3.30.40.10, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR036427, Bromodomain-like_sf
IPR016177, DNA-bd_dom_sf
IPR003889, FYrich_C
IPR003888, FYrich_N
IPR001739, Methyl_CpG_DNA-bd
IPR028942, WHIM1_dom
IPR028941, WHIM2_dom
IPR019786, Zinc_finger_PHD-type_CS
IPR011011, Znf_FYVE_PHD
IPR001965, Znf_PHD
IPR019787, Znf_PHD-finger
IPR013083, Znf_RING/FYVE/PHD

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF05965, FYRC, 1 hit
PF05964, FYRN, 1 hit
PF01429, MBD, 1 hit
PF00628, PHD, 2 hits
PF15612, WHIM1, 1 hit
PF15613, WSD, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00249, PHD, 2 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF54171, SSF54171, 1 hit
SSF57903, SSF57903, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51543, FYRC, 1 hit
PS51542, FYRN, 1 hit
PS50982, MBD, 1 hit
PS01359, ZF_PHD_1, 2 hits
PS50016, ZF_PHD_2, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (2)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 2 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket
Isoform 1 (identifier: Q9SGH2-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MEPTDSTNEQ LGDTKTAAVK EESRSFLGID LNEIPTGATL GGGCTAGQDD
60 70 80 90 100
DGEYEPVEVV RSIHDNPDPA PGAPAEVPEP DRDASCGACG RPESIELVVV
110 120 130 140 150
CDACERGFHM SCVNDGVEAA PSADWMCSDC RTGGERSKLW PLGVKSKLIL
160 170 180 190 200
DMNASPPSDA EGYGAEETSD SRKHMLASSS CIGNSFDYAM MHSSFSSLGR
210 220 230 240 250
GHASLEASGL MSRNTKMSMD ALGSHNLGFG FPLNLNNSSL PMRFPSLDPS
260 270 280 290 300
ELFLQNLRHF ISERHGVLED GWRVEFRQPL NGYQLCAVYC APNGKTFSSI
310 320 330 340 350
QEVACYLGLA INGNYSCMDA EIRNENSLLQ ERLHTPKRRK TSRWPNNGFP
360 370 380 390 400
EQKGSSVSAQ LRRFPFNGQT MSPFAVKSGT HFQAGGSLSS GNNGCGCEEA
410 420 430 440 450
KNGCPMQFED FFVLSLGRID IRQSYHNVNV IYPIGYKSCW HDKITGSLFT
460 470 480 490 500
CEVSDGNSGP IFKVTRSPCS KSFIPAGSTV FSCPKIDEMV EQNSDKLSNR
510 520 530 540 550
RDSTQERDDD ASVEILLSEH CPPLGDDILS CLREKSFSKT VNSLRSEVDS
560 570 580 590 600
SRVDFDKNLS YDQDHGVEIG DIVVEEDSLS DAWKKVSQKL VDACSIVLKQ
610 620 630 640 650
KGTLNFLCKH VDRETSEINW DTMNEKDNVI LSLSKFCCSL APCSVTCGEK
660 670 680 690 700
DKSEFAAVVD ALSRWLDQNR FGLDADFVQE MIEHMPGAES CTNYRTLKSR
710 720 730 740 750
SSSSVPITVA EGALVVKPKG GENVKDEVFG EISRKAKKPK LNGGHGVRNL
760 770 780 790 800
HPPPGRPMCL RLPPGLVGDF LQVSEVFWRF HEILGFEEAF SPENLEQELI
810 820 830 840 850
NPVFDGLFLD KPGKDDKRSE INFTDKDSTA TKLFSLFDES RQPFPAKNTS
860 870 880 890 900
ASELKEKKAG DSSDFKISDS SRGSCVGALL TRAHISLLQV LICELQSKVA
910 920 930 940 950
AFVDPNFDSG ESRSRRGRKK DDSTLSAKRN KLHMLPVNEF TWPELARRYI
960 970 980 990 1000
LSLLSMDGNL ESAEIAARES GKVFRCLQGD GGLLCGSLTG VAGMEADSML
1010 1020 1030 1040 1050
LAEAIKKISG SLTSENDVLS VEDDDSDGLD ATETNTCSGD IPEWAQVLEP
1060 1070 1080 1090 1100
VKKLPTNVGT RIRKCVYEAL ERNPPEWAKK ILEHSISKEI YKGNASGPTK
1110 1120 1130 1140 1150
KAVLSLLADI RGGDLVQRSI KGTKKRTYIS VSDVIMKKCR AVLRGVAAAD
1160 1170 1180 1190 1200
EDKVLCTLLG RKLLNSSDND DDGLLGSPAM VSRPLDFRTI DLRLAAGAYD
1210 1220 1230 1240 1250
GSTEAFLEDV LELWSSIRVM YADQPDCVDL VATLSEKFKS LYEAEVVPLV
1260 1270 1280 1290 1300
QKLKDYRKLE CLSAEMKKEI KDIVVSVNKL PKAPWDEGVC KVCGVDKDDD
1310 1320 1330 1340 1350
SVLLCDTCDA EYHTYCLNPP LIRIPDGNWY CPSCVIAKRM AQEALESYKL
1360 1370 1380 1390 1400
VRRRKGRKYQ GELTRASMEL TAHLADVMEE KDYWEFSAEE RILLLKLLCD
1410 1420 1430 1440 1450
ELLSSSLVHQ HLEQCAEAII EMQQKLRSLS SEWKNAKMRQ EFLTAKLAKV
1460 1470 1480 1490 1500
EPSILKEVGE PHNSSYFADQ MGCDPQPQEG VGDGVTRDDE TSSTAYLNKN
1510 1520 1530 1540 1550
QGKSPLETDT QPGESHVNFG ESKISSPETI SSPGRHELPI ADTSPLVTDN
1560 1570 1580 1590 1600
LPEKDTSETL LKSVGRNHET HSPNSNAVEL PTAHDASSQA SQELQACQQD
1610 1620 1630 1640 1650
LSATSNEIQN LQQSIRSIES QLLKQSIRRD FLGTDASGRL YWGCCFPDEN
1660 1670 1680 1690 1700
PRILVDGSIS LQKPVQADLI GSKVPSPFLH TVDHGRLRLS PWTYYETETE
1710 1720 1730 1740 1750
ISELVQWLHD DDLKERDLRE SILWWKRLRY GDVQKEKKQA QNLSAPVFAT
1760 1770 1780 1790 1800
GLETKAAMSM EKRYGPCIKL EMETLKKRGK KTKVAEREKL CRCECLESIL
1810 1820 1830 1840 1850
PSMIHCLICH KTFASDDEFE DHTESKCIPY SLATEEGKDI SDSSKAKESL
1860 1870 1880 1890 1900
KSDYLNVKSS AGKDVAEISN VSELDSGLIR YQEEESISPY HFEEICSKFV
1910 1920 1930 1940 1950
TKDCNRDLVK EIGLISSNGI PTFLPSSSTH LNDSVLISAK SNKPDGGDSG
1960 1970 1980 1990 2000
DQVIFAGPET NVEGLNSESN MSFDRSVTDS HGGPLDKPSG LGFGFSEQKN
2010 2020 2030 2040 2050
KKSSGSGLKS CCVVPQAALK RVTGKALPGF RFLKTNLLDM DVALPEEALR
2060 2070 2080 2090 2100
PSKSHPNRRR AWRVFVKSSQ SIYELVQATI VVEDMIKTEY LKNEWWYWSS
2110 2120 2130 2140 2150
LSAAAKISTL SALSVRIFSL DAAIIYDKPI TPSNPIDETK PIISLPDQKS
2160 2170
QPVSDSQERS SRVRRSGKKR KEPEGS
Length:2,176
Mass (Da):240,431
Last modified:May 1, 2000 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i05DBD955D895C3D5
GO
Isoform 2 (identifier: Q9SGH2-2)
Sequence is not available
Length:
Mass (Da):

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAF01531 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC009325 Genomic DNA Translation: AAF01531.1 Sequence problems.
AC010870 Genomic DNA Translation: AAF24616.1
CP002686 Genomic DNA Translation: AEE73669.1

NCBI Reference Sequences

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RefSeqi
NP_186795.1, NM_111012.4 [Q9SGH2-1]

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT3G01460.1; AT3G01460.1; AT3G01460 [Q9SGH2-1]

Database of genes from NCBI RefSeq genomes

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GeneIDi
821132

Gramene; a comparative resource for plants

More...
Gramenei
AT3G01460.1; AT3G01460.1; AT3G01460 [Q9SGH2-1]

KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGGi
ath:AT3G01460

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009325 Genomic DNA Translation: AAF01531.1 Sequence problems.
AC010870 Genomic DNA Translation: AAF24616.1
CP002686 Genomic DNA Translation: AEE73669.1
RefSeqiNP_186795.1, NM_111012.4 [Q9SGH2-1]

3D structure databases

SMRiQ9SGH2
ModBaseiSearch...

Protein-protein interaction databases

BioGRIDi6465, 3 interactors
STRINGi3702.AT3G01460.1

PTM databases

iPTMnetiQ9SGH2

Proteomic databases

PaxDbiQ9SGH2
PRIDEiQ9SGH2
ProteomicsDBi238318 [Q9SGH2-1]

Genome annotation databases

EnsemblPlantsiAT3G01460.1; AT3G01460.1; AT3G01460 [Q9SGH2-1]
GeneIDi821132
GrameneiAT3G01460.1; AT3G01460.1; AT3G01460 [Q9SGH2-1]
KEGGiath:AT3G01460

Organism-specific databases

AraportiAT3G01460
TAIRilocus:2096672, AT3G01460

Phylogenomic databases

eggNOGiENOG502QW8S, Eukaryota
HOGENOMiCLU_234476_0_0_1
InParanoidiQ9SGH2
OMAiWTYYETE
PhylomeDBiQ9SGH2

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q9SGH2

Gene expression databases

ExpressionAtlasiQ9SGH2, baseline and differential
GenevisibleiQ9SGH2, AT

Family and domain databases

Gene3Di1.20.920.10, 1 hit
3.30.40.10, 2 hits
InterProiView protein in InterPro
IPR036427, Bromodomain-like_sf
IPR016177, DNA-bd_dom_sf
IPR003889, FYrich_C
IPR003888, FYrich_N
IPR001739, Methyl_CpG_DNA-bd
IPR028942, WHIM1_dom
IPR028941, WHIM2_dom
IPR019786, Zinc_finger_PHD-type_CS
IPR011011, Znf_FYVE_PHD
IPR001965, Znf_PHD
IPR019787, Znf_PHD-finger
IPR013083, Znf_RING/FYVE/PHD
PfamiView protein in Pfam
PF05965, FYRC, 1 hit
PF05964, FYRN, 1 hit
PF01429, MBD, 1 hit
PF00628, PHD, 2 hits
PF15612, WHIM1, 1 hit
PF15613, WSD, 1 hit
SMARTiView protein in SMART
SM00249, PHD, 2 hits
SUPFAMiSSF54171, SSF54171, 1 hit
SSF57903, SSF57903, 2 hits
PROSITEiView protein in PROSITE
PS51543, FYRC, 1 hit
PS51542, FYRN, 1 hit
PS50982, MBD, 1 hit
PS01359, ZF_PHD_1, 2 hits
PS50016, ZF_PHD_2, 2 hits

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiMBD9_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9SGH2
Secondary accession number(s): Q9SSA6
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 8, 2011
Last sequence update: May 1, 2000
Last modified: September 29, 2021
This is version 150 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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