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Entry version 121 (13 Feb 2019)
Sequence version 1 (01 May 2000)
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Protein

RNA-dependent RNA polymerase 6

Gene

RDR6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

RNA-dependent RNA polymerase involved in post-transcriptional gene silencing (PTGS). Possesses ssRNA and ssDNA-dependent polymerase activity, but does not have priming activity. Possesses in vitro 3' nucleotidyltransferase activity in the presence of UTP as single nucleotide. Required for the production of 21 nucleotide trans-acting small interfering RNAs (ta-siRNAs) derived from TAS1, TAS2 and TAS3 endogenous transcripts. Acts in the RDR6/SGS3/DCL4/AGO7 ta-siRNA pathway involved in leaf developmental timing. Required for the production of natural siRNAs (nat-siRNAs) derived from cis-natural antisense transcripts. Required for the production of 24 nucleotide nat-siRNAs derived from the stress-related P5CDH-SRO5 antisense gene pair. Required for PTGS induced by transgene direct repeats. Plays an essential role in transitive silencing of transgenes by processing secondary siRNAs. This pathway, which requires DCL2 and DCL4, amplifies silencing by using the target RNA as substrate to generate secondary siRNAs, providing an efficient mechanism for long-distance silencing. Involved in the biogenesis of secondary siRNAs which require 22 nucleotide miRNAs associated to AGO1. Participates synergistically with AS1 and AS2 to proper plant development by repressing the miR165 and miR166 microRNAs (independently of AGO10) that may lead to mRNA degradation of genes in the class III HD-ZIP family. Required for the production of some small RNAs derived from the crucifer-infecting tobamovirus (TMV-cg). Required for sense virus-induced post-transcriptional gene silencing (S-PTGS).13 Publications

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • DNA-directed DNA polymerase activity Source: UniProtKB-KW
  • RNA binding Source: UniProtKB-KW
  • RNA-directed 5'-3' RNA polymerase activity Source: TAIR

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-directed DNA polymerase, Nucleotidyltransferase, RNA-binding, RNA-directed RNA polymerase, Transferase
Biological processPlant defense, RNA-mediated gene silencing

Enzyme and pathway databases

BRENDA Comprehensive Enzyme Information System

More...
BRENDAi
2.7.7.48 399

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
RNA-dependent RNA polymerase 6 (EC:2.7.7.48)
Short name:
AtRDRP6
Alternative name(s):
Protein SILENCING DEFECTIVE 1
Protein SUPPRESSOR OF GENE SILENCING 2
RNA-directed RNA polymerase 6
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:RDR6
Synonyms:RDRP6, SDE1, SGS2
Ordered Locus Names:At3g49500
ORF Names:T1G12.20, T9C5.95
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 3

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT3G49500

The Arabidopsis Information Resource

More...
TAIRi
locus:2114633 AT3G49500

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the ‘Pathology and Biotech’ section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

First leaves are elongated and curl downward. Presence of stigmatic tissue in the middle of the septum at the apical end of the carpels. Altered post-transcriptional gene silencing (PTGS). Accumulation of ARF4 mRNA (targeted by TAS3-derived siRNAs). Upon infection, over-accumulation of CMV RNA and enhanced susceptibility to cucumber mosaic virus (CMV). Reduced levels of TMV-cg-derived small RNAs.6 Publications

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/manual/pathology_and_biotech_section">'Pathology and Biotech'</a> section describes the effect of the experimental mutation of one or more amino acid(s) on the biological properties of the protein.<p><a href='/help/mutagen' target='_top'>More...</a></p>Mutagenesisi429E → K: Alters post-transcriptional gene silencing. 1 Publication1
Mutagenesisi453E → K: Alters post-transcriptional gene silencing. 1 Publication1
Mutagenesisi611P → L: Alters post-transcriptional gene silencing. 1 Publication1
Mutagenesisi825G → E: Alters post-transcriptional gene silencing. 1 Publication1
Mutagenesisi826D → N: Alters post-transcriptional gene silencing. 2 Publications1
Mutagenesisi860S → F: Alters post-transcriptional gene silencing. 1 Publication1
Mutagenesisi866G → E in rdr6-13; alters post-transcriptional gene silencing. 2 Publications1
Mutagenesisi867D → A: Loss of polymerase activity. 1 Publication1

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004046771 – 1196RNA-dependent RNA polymerase 6Add BLAST1196

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9SG02

PRoteomics IDEntifications database

More...
PRIDEi
Q9SG02

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Widely expressed.1 Publication

Gene expression databases

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q9SG02 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Interacts with SGS3.1 Publication

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

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BioGridi
9430, 1 interactor

Protein interaction database and analysis system

More...
IntActi
Q9SG02, 1 interactor

Molecular INTeraction database

More...
MINTi
Q9SG02

STRING: functional protein association networks

More...
STRINGi
3702.AT3G49500.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
Q9SG02

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q9SG02

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the RdRP family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0988 Eukaryota
ENOG410XQMQ LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000239464

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q9SG02

KEGG Orthology (KO)

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KOi
K11699

Identification of Orthologs from Complete Genome Data

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OMAi
HFARPEG

Database of Orthologous Groups

More...
OrthoDBi
63910at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q9SG02

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR035979 RBD_domain_sf
IPR007855 RNA-dep_RNA_pol_euk-typ

The PANTHER Classification System

More...
PANTHERi
PTHR23079 PTHR23079, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF05183 RdRP, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF54928 SSF54928, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9SG02-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGSEGNMKKS VVTQVSIGGF GESTTAKQLT DYLEDEVGIV WRCRLKTSWT
60 70 80 90 100
PPGSYPNFEI ADTSNIPSID EYKKVEPHAF VHFAVFESAG RAMDAAGQCN
110 120 130 140 150
LILDGQPLKV SLGPKNPYSL NQRRRTTVPY KLAGITLEIG TLVSRDDFFV
160 170 180 190 200
SWRAEGVDFL VDPFDNTCKF CFRKSTAFSF KDAVMHAVIN CDYKLELLVR
210 220 230 240 250
DIQTVRQYKT LHGFVLILQL ASSPRVWYRT ADDDIYDTVP GDLLDDDDPW
260 270 280 290 300
IRTTDFTQVG AIGRCHSYRV LISPRYENKL RTALDYFRMR RVQEERVRWP
310 320 330 340 350
PRIRNEPCFG EPVSDHFFCI HHKEGISFEI MFLVNSVLHR GVFNQFQLTE
360 370 380 390 400
RFFDLLRNQP KDVNIASLKH LCTYKRPVFD AYKRLKLVQE WIQKNPKLLG
410 420 430 440 450
SHEQSEDISE IRRLVITPTR AYCLPPEVEL SNRVLRRYKA VAERFLRVTF
460 470 480 490 500
MDESMQTINS NVLSYFVAPI VKDLTSSSFS QKTYVFKRVK SILTDGFKLC
510 520 530 540 550
GRKYSFLAFS ANQLRDRSAW FFAEDGKTRV SDIKTWMGKF KDKNVAKCAA
560 570 580 590 600
RMGLCFSSTY ATVDVMPHEV DTEVPDIERN GYVFSDGIGT ITPDLADEVM
610 620 630 640 650
EKLKLDVHYS PCAYQIRYAG FKGVVARWPS KSDGIRLALR DSMKKFFSKH
660 670 680 690 700
TILEICSWTR FQPGFLNRQI ITLLSVLGVP DEIFWDMQES MLYKLNRILD
710 720 730 740 750
DTDVAFEVLT ASCAEQGNTA AIMLSAGFKP KTEPHLRGML SSVRIAQLWG
760 770 780 790 800
LREKSRIFVT SGRWLMGCLD EAGILEHGQC FIQVSKPSIE NCFSKHGSRF
810 820 830 840 850
KETKTDLEVV KGYVAIAKNP CLHPGDVRIL EAVDVPQLHH MYDCLIFPQK
860 870 880 890 900
GDRPHTNEAS GSDLDGDLYF VAWDQKLIPP NRKSYPAMHY DAAEEKSLGR
910 920 930 940 950
AVNHQDIIDF FARNLANEQL GTICNAHVVH ADRSEYGAMD EECLLLAELA
960 970 980 990 1000
ATAVDFPKTG KIVSMPFHLK PKLYPDFMGK EDYQTYKSNK ILGRLYRRVK
1010 1020 1030 1040 1050
EVYDEDAEAS SEESTDPSAI PYDAVLEIPG FEDLIPEAWG HKCLYDGQLI
1060 1070 1080 1090 1100
GLLGQYKVQK EEEIVTGHIW SMPKYTSKKQ GELKERLKHS YNSLKKEFRK
1110 1120 1130 1140 1150
VFEETIPDHE NLSEEEKNIL YEKKASAWYH VTYHPEWVKK SLELQDPDES
1160 1170 1180 1190
SHAAMLSFAW IAADYLARIK IRSREMGSID SAKPVDSLAK FLAQRL
Length:1,196
Mass (Da):136,929
Last modified:May 1, 2000 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i812DEB9CEDC82C8F
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti597D → G in AAF74208 (PubMed:10850496).Curated1
Sequence conflicti646F → I in AAF74208 (PubMed:10850496).Curated1
Sequence conflicti681D → V in AAF74208 (PubMed:10850496).Curated1
Sequence conflicti696N → D in AAF74208 (PubMed:10850496).Curated1
Sequence conflicti700D → V in AAF74208 (PubMed:10850496).Curated1
Sequence conflicti805T → K in AAF74208 (PubMed:10850496).Curated1
Sequence conflicti998R → P in AAF74208 (PubMed:10850496).Curated1
Sequence conflicti1044L → S in AAF74208 (PubMed:10850496).Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AF239718 Genomic DNA Translation: AAF73959.1
AF268093 Genomic DNA Translation: AAF74208.1
AC012329 Genomic DNA Translation: AAG52184.1
AL132964 Genomic DNA Translation: CAB71285.1
CP002686 Genomic DNA Translation: AEE78550.1
CP002686 Genomic DNA Translation: ANM65667.1
CP002686 Genomic DNA Translation: ANM65668.1
CP002686 Genomic DNA Translation: ANM65669.1
CP002686 Genomic DNA Translation: ANM65670.1

NCBI Reference Sequences

More...
RefSeqi
NP_001327617.1, NM_001339423.1
NP_001327618.1, NM_001339424.1
NP_001327619.1, NM_001339425.1
NP_001327620.1, NM_001339426.1
NP_190519.1, NM_114810.3

UniGene gene-oriented nucleotide sequence clusters

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UniGenei
At.65263

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT3G49500.1; AT3G49500.1; AT3G49500
AT3G49500.2; AT3G49500.2; AT3G49500
AT3G49500.3; AT3G49500.3; AT3G49500
AT3G49500.4; AT3G49500.4; AT3G49500
AT3G49500.5; AT3G49500.5; AT3G49500

Database of genes from NCBI RefSeq genomes

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GeneIDi
824112

Gramene; a comparative resource for plants

More...
Gramenei
AT3G49500.1; AT3G49500.1; AT3G49500
AT3G49500.2; AT3G49500.2; AT3G49500
AT3G49500.3; AT3G49500.3; AT3G49500
AT3G49500.4; AT3G49500.4; AT3G49500
AT3G49500.5; AT3G49500.5; AT3G49500

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT3G49500

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF239718 Genomic DNA Translation: AAF73959.1
AF268093 Genomic DNA Translation: AAF74208.1
AC012329 Genomic DNA Translation: AAG52184.1
AL132964 Genomic DNA Translation: CAB71285.1
CP002686 Genomic DNA Translation: AEE78550.1
CP002686 Genomic DNA Translation: ANM65667.1
CP002686 Genomic DNA Translation: ANM65668.1
CP002686 Genomic DNA Translation: ANM65669.1
CP002686 Genomic DNA Translation: ANM65670.1
RefSeqiNP_001327617.1, NM_001339423.1
NP_001327618.1, NM_001339424.1
NP_001327619.1, NM_001339425.1
NP_001327620.1, NM_001339426.1
NP_190519.1, NM_114810.3
UniGeneiAt.65263

3D structure databases

ProteinModelPortaliQ9SG02
SMRiQ9SG02
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi9430, 1 interactor
IntActiQ9SG02, 1 interactor
MINTiQ9SG02
STRINGi3702.AT3G49500.1

Proteomic databases

PaxDbiQ9SG02
PRIDEiQ9SG02

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G49500.1; AT3G49500.1; AT3G49500
AT3G49500.2; AT3G49500.2; AT3G49500
AT3G49500.3; AT3G49500.3; AT3G49500
AT3G49500.4; AT3G49500.4; AT3G49500
AT3G49500.5; AT3G49500.5; AT3G49500
GeneIDi824112
GrameneiAT3G49500.1; AT3G49500.1; AT3G49500
AT3G49500.2; AT3G49500.2; AT3G49500
AT3G49500.3; AT3G49500.3; AT3G49500
AT3G49500.4; AT3G49500.4; AT3G49500
AT3G49500.5; AT3G49500.5; AT3G49500
KEGGiath:AT3G49500

Organism-specific databases

AraportiAT3G49500
TAIRilocus:2114633 AT3G49500

Phylogenomic databases

eggNOGiKOG0988 Eukaryota
ENOG410XQMQ LUCA
HOGENOMiHOG000239464
InParanoidiQ9SG02
KOiK11699
OMAiHFARPEG
OrthoDBi63910at2759
PhylomeDBiQ9SG02

Enzyme and pathway databases

BRENDAi2.7.7.48 399

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q9SG02

Gene expression databases

GenevisibleiQ9SG02 AT

Family and domain databases

InterProiView protein in InterPro
IPR035979 RBD_domain_sf
IPR007855 RNA-dep_RNA_pol_euk-typ
PANTHERiPTHR23079 PTHR23079, 1 hit
PfamiView protein in Pfam
PF05183 RdRP, 1 hit
SUPFAMiSSF54928 SSF54928, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRDR6_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9SG02
Secondary accession number(s): A0A1I9LSW2, Q9LKP0
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 8, 2011
Last sequence update: May 1, 2000
Last modified: February 13, 2019
This is version 121 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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