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UniProtKB - Q9SD81 (GDPD6_ARATH)
Protein
Glycerophosphodiester phosphodiesterase GDPD6
Gene
GDPD6
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Functioni
Catalytic activityi
- EC:3.1.4.46By similarity
GO - Molecular functioni
- glycerophosphodiester phosphodiesterase activity Source: GO_Central
GO - Biological processi
- glycerol metabolic process Source: UniProtKB-KW
- lipid metabolic process Source: InterPro
Keywordsi
Molecular function | Hydrolase |
Biological process | Glycerol metabolism |
Names & Taxonomyi
Protein namesi | Recommended name: Glycerophosphodiester phosphodiesterase GDPD6Curated (EC:3.1.4.46By similarity)Alternative name(s): Glycerophosphodiester phosphodiesterase 61 Publication Short name: ATGDPD61 Publication |
Gene namesi | Name:GDPD61 Publication Ordered Locus Names:At5g08030Imported ORF Names:F13G24.230Imported |
Organismi | Arabidopsis thaliana (Mouse-ear cress) |
Taxonomic identifieri | 3702 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Proteomesi |
|
Organism-specific databases
Araporti | AT5G08030 |
TAIRi | locus:2142823, AT5G08030 |
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Signal peptidei | 1 – 21 | Sequence analysisAdd BLAST | 21 | |
ChainiPRO_0000430613 | 22 – 372 | Glycerophosphodiester phosphodiesterase GDPD6Sequence analysisAdd BLAST | 351 |
Amino acid modifications
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Glycosylationi | 120 | N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation | 1 | |
Glycosylationi | 239 | N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation | 1 | |
Glycosylationi | 260 | N-linked (GlcNAc...) asparaginePROSITE-ProRule annotation | 1 |
Keywords - PTMi
GlycoproteinProteomic databases
PaxDbi | Q9SD81 |
ProteomicsDBi | 247119 |
Expressioni
Tissue specificityi
Expressed in flowers and siliques.1 Publication
Inductioni
By phosphate starvation.1 Publication
Gene expression databases
ExpressionAtlasi | Q9SD81, baseline and differential |
Genevisiblei | Q9SD81, AT |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 44 – 362 | GP-PDESequence analysisAdd BLAST | 319 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 32 – 58 | DisorderedSequence analysisAdd BLAST | 27 |
Sequence similaritiesi
Belongs to the glycerophosphoryl diester phosphodiesterase family.Curated
Keywords - Domaini
SignalPhylogenomic databases
eggNOGi | KOG2258, Eukaryota |
HOGENOMi | CLU_030226_4_1_1 |
InParanoidi | Q9SD81 |
PhylomeDBi | Q9SD81 |
Family and domain databases
Gene3Di | 3.20.20.190, 1 hit |
InterProi | View protein in InterPro IPR030395, GP_PDE_dom IPR017946, PLC-like_Pdiesterase_TIM-brl |
Pfami | View protein in Pfam PF03009, GDPD, 1 hit |
SUPFAMi | SSF51695, SSF51695, 1 hit |
PROSITEi | View protein in PROSITE PS51704, GP_PDE, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
: The displayed sequence is further processed into a mature form. Sequence processingi
This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All
Q9SD81-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MAFKYLLPLL LLSLLVANCA SRPLYRLPSE AKHATKKPLQ TSRPYNLAHR
60 70 80 90 100
GSNGELPEET APAYMRAIEE GADFIETDIL SSKDGVLICH HDVNLDDTTD
110 120 130 140 150
VADHKEFADR KRTYEVQGMN MTGFFTVDFT LKELKTLGAK QRYPFRDQQY
160 170 180 190 200
NGKFPIITFD EYISIALDAP RVVGIYPEIK NPVFMNQQVK WADGKKFEDK
210 220 230 240 250
FVETLKKYGY KGSYLSEDWL KQPIFIQSFA ATSLVYISNM TDSPKLFLID
260 270 280 290 300
DVTILTEDTN KTYAEITSDA YLDYIKPYVI GIGPWKDTIV PVNNNRLMTP
310 320 330 340 350
TDLVARAHSR NLQVHPYTYR NENQFLHLEF NQDPYLEYDY WLNKIGVDGL
360 370
FTDFTGSLHN YQELKSPLPQ QQ
Computationally mapped potential isoform sequencesi
There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basketA0A1P8BCR6 | A0A1P8BCR6_ARATH | Glycerophosphodiester phosphodieste... | GDPD6 AtGDPD6, At5g08030, T22D6.1 | 387 | Annotation score: |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AL133421 Genomic DNA Translation: CAB62615.1 CP002688 Genomic DNA Translation: AED91236.1 BT023450 mRNA Translation: AAY56441.1 |
PIRi | T45628 |
RefSeqi | NP_196420.1, NM_120885.4 |
Genome annotation databases
EnsemblPlantsi | AT5G08030.1; AT5G08030.1; AT5G08030 |
GeneIDi | 830697 |
Gramenei | AT5G08030.1; AT5G08030.1; AT5G08030 |
KEGGi | ath:AT5G08030 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AL133421 Genomic DNA Translation: CAB62615.1 CP002688 Genomic DNA Translation: AED91236.1 BT023450 mRNA Translation: AAY56441.1 |
PIRi | T45628 |
RefSeqi | NP_196420.1, NM_120885.4 |
3D structure databases
AlphaFoldDBi | Q9SD81 |
SMRi | Q9SD81 |
ModBasei | Search... |
Protein-protein interaction databases
STRINGi | 3702.AT5G08030.1 |
Proteomic databases
PaxDbi | Q9SD81 |
ProteomicsDBi | 247119 |
Genome annotation databases
EnsemblPlantsi | AT5G08030.1; AT5G08030.1; AT5G08030 |
GeneIDi | 830697 |
Gramenei | AT5G08030.1; AT5G08030.1; AT5G08030 |
KEGGi | ath:AT5G08030 |
Organism-specific databases
Araporti | AT5G08030 |
TAIRi | locus:2142823, AT5G08030 |
Phylogenomic databases
eggNOGi | KOG2258, Eukaryota |
HOGENOMi | CLU_030226_4_1_1 |
InParanoidi | Q9SD81 |
PhylomeDBi | Q9SD81 |
Miscellaneous databases
PROi | PR:Q9SD81 |
Gene expression databases
ExpressionAtlasi | Q9SD81, baseline and differential |
Genevisiblei | Q9SD81, AT |
Family and domain databases
Gene3Di | 3.20.20.190, 1 hit |
InterProi | View protein in InterPro IPR030395, GP_PDE_dom IPR017946, PLC-like_Pdiesterase_TIM-brl |
Pfami | View protein in Pfam PF03009, GDPD, 1 hit |
SUPFAMi | SSF51695, SSF51695, 1 hit |
PROSITEi | View protein in PROSITE PS51704, GP_PDE, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | GDPD6_ARATH | |
Accessioni | Q9SD81Primary (citable) accession number: Q9SD81 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | October 29, 2014 |
Last sequence update: | May 1, 2000 | |
Last modified: | May 25, 2022 | |
This is version 119 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Plant Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Arabidopsis thaliana
Arabidopsis thaliana: entries and gene names - SIMILARITY comments
Index of protein domains and families