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Protein

Pentatricopeptide repeat-containing protein At1g79540

Gene

At1g79540

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At1g79540
Gene namesi
Ordered Locus Names:At1g79540
ORF Names:T8K14.4
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G79540
TAIRilocus:2206420 AT1G79540

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003428741 – 780Pentatricopeptide repeat-containing protein At1g79540Add BLAST780

Proteomic databases

PaxDbiQ9SAJ5
PRIDEiQ9SAJ5

Expressioni

Gene expression databases

ExpressionAtlasiQ9SAJ5 baseline and differential
GenevisibleiQ9SAJ5 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G79540.1

Structurei

3D structure databases

ProteinModelPortaliQ9SAJ5
SMRiQ9SAJ5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati91 – 125PPR 1Add BLAST35
Repeati126 – 160PPR 2Add BLAST35
Repeati161 – 196PPR 3Add BLAST36
Repeati197 – 231PPR 4Add BLAST35
Repeati232 – 266PPR 5Add BLAST35
Repeati267 – 301PPR 6Add BLAST35
Repeati302 – 336PPR 7Add BLAST35
Repeati337 – 371PPR 8Add BLAST35
Repeati372 – 406PPR 9Add BLAST35
Repeati407 – 441PPR 10Add BLAST35
Repeati442 – 476PPR 11Add BLAST35
Repeati481 – 515PPR 12Add BLAST35
Repeati516 – 550PPR 13Add BLAST35
Repeati551 – 585PPR 14Add BLAST35
Repeati653 – 687PPR 15Add BLAST35
Repeati688 – 722PPR 16Add BLAST35
Repeati723 – 758PPR 17Add BLAST36

Sequence similaritiesi

Belongs to the PPR family. P subfamily.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000242997
InParanoidiQ9SAJ5
OMAiYDMDAYL
OrthoDBiEOG093602WA
PhylomeDBiQ9SAJ5

Family and domain databases

Gene3Di1.25.40.10, 6 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 3 hits
PF12854 PPR_1, 1 hit
PF13041 PPR_2, 4 hits
PF13812 PPR_3, 1 hit
TIGRFAMsiTIGR00756 PPR, 13 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 16 hits

Sequencei

Sequence statusi: Complete.

Q9SAJ5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKPQMFFRSV IQFYSKPSWM QRSYSSGNAE FNISGEVISI LAKKKPIEPA
60 70 80 90 100
LEPLVPFLSK NIITSVIKDE VNRQLGFRFF IWASRRERLR SRESFGLVID
110 120 130 140 150
MLSEDNGCDL YWQTLEELKS GGVSVDSYCF CVLISAYAKM GMAEKAVESF
160 170 180 190 200
GRMKEFDCRP DVFTYNVILR VMMREEVFFM LAFAVYNEML KCNCSPNLYT
210 220 230 240 250
FGILMDGLYK KGRTSDAQKM FDDMTGRGIS PNRVTYTILI SGLCQRGSAD
260 270 280 290 300
DARKLFYEMQ TSGNYPDSVA HNALLDGFCK LGRMVEAFEL LRLFEKDGFV
310 320 330 340 350
LGLRGYSSLI DGLFRARRYT QAFELYANML KKNIKPDIIL YTILIQGLSK
360 370 380 390 400
AGKIEDALKL LSSMPSKGIS PDTYCYNAVI KALCGRGLLE EGRSLQLEMS
410 420 430 440 450
ETESFPDACT HTILICSMCR NGLVREAEEI FTEIEKSGCS PSVATFNALI
460 470 480 490 500
DGLCKSGELK EARLLLHKME VGRPASLFLR LSHSGNRSFD TMVESGSILK
510 520 530 540 550
AYRDLAHFAD TGSSPDIVSY NVLINGFCRA GDIDGALKLL NVLQLKGLSP
560 570 580 590 600
DSVTYNTLIN GLHRVGREEE AFKLFYAKDD FRHSPAVYRS LMTWSCRKRK
610 620 630 640 650
VLVAFNLWMK YLKKISCLDD ETANEIEQCF KEGETERALR RLIELDTRKD
660 670 680 690 700
ELTLGPYTIW LIGLCQSGRF HEALMVFSVL REKKILVTPP SCVKLIHGLC
710 720 730 740 750
KREQLDAAIE VFLYTLDNNF KLMPRVCNYL LSSLLESTEK MEIVSQLTNR
760 770 780
MERAGYNVDS MLRFEILKYH RHRKQVLIDL
Length:780
Mass (Da):88,851
Last modified:May 1, 2000 - v1
Checksum:i604B8E9FBA88BFA9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC007202 Genomic DNA Translation: AAD30222.1
CP002684 Genomic DNA Translation: AEE36261.1
PIRiG96826
RefSeqiNP_178072.1, NM_106602.3
UniGeneiAt.49525

Genome annotation databases

EnsemblPlantsiAT1G79540.1; AT1G79540.1; AT1G79540
GeneIDi844292
GrameneiAT1G79540.1; AT1G79540.1; AT1G79540
KEGGiath:AT1G79540

Similar proteinsi

Entry informationi

Entry nameiPP133_ARATH
AccessioniPrimary (citable) accession number: Q9SAJ5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: May 1, 2000
Last modified: May 23, 2018
This is version 99 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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