UniProtKB - Q9RXY1 (RL13_DEIRA)
Protein
50S ribosomal protein L13
Gene
rplM
Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Functioni
This protein is one of the early assembly proteins of the 50S ribosomal subunit (By similarity). Binds to the 23S rRNA.By similarity
GO - Molecular functioni
- mRNA binding Source: GO_Central
- rRNA binding Source: UniProtKB-KW
- structural constituent of ribosome Source: GO_Central
GO - Biological processi
- negative regulation of translation Source: GO_Central
- translation Source: UniProtKB-UniRule
Keywordsi
Molecular function | Ribonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding |
Names & Taxonomyi
Protein namesi | Recommended name: 50S ribosomal protein L13 |
Gene namesi | Name:rplM Ordered Locus Names:DR_0174 |
Organismi | Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) |
Taxonomic identifieri | 243230 [NCBI] |
Taxonomic lineagei | Bacteria › Deinococcus-Thermus › Deinococci › Deinococcales › Deinococcaceae › Deinococcus › |
Proteomesi |
|
Subcellular locationi
GO - Cellular componenti
- cytosolic large ribosomal subunit Source: GO_Central
- ribosome Source: GO_Central
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000133733 | 1 – 174 | 50S ribosomal protein L13Add BLAST | 174 |
Interactioni
Subunit structurei
Part of the 50S ribosomal subunit. Contacts proteins L3 and L20.
6 PublicationsProtein-protein interaction databases
STRINGi | 243230.DR_0174 |
Structurei
Secondary structure
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details3D structure databases
SMRi | Q9RXY1 |
ModBasei | Search... |
PDBe-KBi | Search... |
Miscellaneous databases
EvolutionaryTracei | Q9RXY1 |
Family & Domainsi
Sequence similaritiesi
Belongs to the universal ribosomal protein uL13 family.Curated
Phylogenomic databases
eggNOGi | COG0102, Bacteria |
HOGENOMi | CLU_082184_2_2_0 |
InParanoidi | Q9RXY1 |
OMAi | DFVVIIN |
OrthoDBi | 1822215at2 |
Family and domain databases
CDDi | cd00392, Ribosomal_L13, 1 hit |
Gene3Di | 3.90.1180.10, 1 hit |
HAMAPi | MF_01366, Ribosomal_L13, 1 hit |
InterProi | View protein in InterPro IPR005822, Ribosomal_L13 IPR005823, Ribosomal_L13_bac-type IPR023563, Ribosomal_L13_CS IPR036899, Ribosomal_L13_sf |
PANTHERi | PTHR11545, PTHR11545, 1 hit |
Pfami | View protein in Pfam PF00572, Ribosomal_L13, 1 hit |
PIRSFi | PIRSF002181, Ribosomal_L13, 1 hit |
SUPFAMi | SSF52161, SSF52161, 1 hit |
TIGRFAMsi | TIGR01066, rplM_bact, 1 hit |
PROSITEi | View protein in PROSITE PS00783, RIBOSOMAL_L13, 1 hit |
i Sequence
Sequence statusi: Complete.
Q9RXY1-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MAFPDTDVSP PRGGPSSPAK SPLLRSFKVK TYIPKNDEQN WVVVDASGVP
60 70 80 90 100
LGRLATLIAS RIRGKHRPDF TPNMIQGDFV VVINAAQVAL TGKKLDDKVY
110 120 130 140 150
TRYTGYQGGL KTETAREALS KHPERVIEHA VFGMLPKGRQ GRAMHTRLKV
160 170
YAGETHPHSA QKPQVLKTQP LEVK
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AE000513 Genomic DNA Translation: AAF09760.1 |
PIRi | E75552 |
RefSeqi | NP_293898.2, NC_001263.1 |
Genome annotation databases
EnsemblBacteriai | AAF09760; AAF09760; DR_0174 |
KEGGi | dra:DR_0174 |
PATRICi | fig|243230.17.peg.338 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AE000513 Genomic DNA Translation: AAF09760.1 |
PIRi | E75552 |
RefSeqi | NP_293898.2, NC_001263.1 |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
1GS2 | model | - | H | 30-171 | [»] | |
1NKW | X-ray | 3.10 | H | 1-174 | [»] | |
1NWX | X-ray | 3.50 | H | 1-174 | [»] | |
1NWY | X-ray | 3.30 | H | 1-174 | [»] | |
1SM1 | X-ray | 3.42 | H | 1-174 | [»] | |
1XBP | X-ray | 3.50 | H | 1-174 | [»] | |
2ZJP | X-ray | 3.70 | G | 1-174 | [»] | |
2ZJQ | X-ray | 3.30 | G | 1-174 | [»] | |
2ZJR | X-ray | 2.91 | G | 1-174 | [»] | |
3CF5 | X-ray | 3.30 | G | 1-174 | [»] | |
3DLL | X-ray | 3.50 | G | 1-174 | [»] | |
3PIO | X-ray | 3.25 | G | 1-174 | [»] | |
3PIP | X-ray | 3.45 | G | 1-174 | [»] | |
4IO9 | X-ray | 3.20 | G | 1-174 | [»] | |
4IOA | X-ray | 3.20 | G | 1-174 | [»] | |
4IOC | X-ray | 3.60 | G | 1-174 | [»] | |
4U67 | X-ray | 3.65 | G | 1-174 | [»] | |
4V49 | X-ray | 8.70 | H | 29-171 | [»] | |
4V4A | X-ray | 9.50 | H | 29-171 | [»] | |
4V4G | X-ray | 11.50 | K | 29-171 | [»] | |
4WFN | X-ray | 3.54 | G | 1-174 | [»] | |
5DM6 | X-ray | 2.90 | G | 30-171 | [»] | |
5DM7 | X-ray | 3.00 | G | 30-171 | [»] | |
5JVG | X-ray | 3.43 | G | 1-174 | [»] | |
5JVH | X-ray | 3.58 | G | 1-174 | [»] | |
SMRi | Q9RXY1 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Protein-protein interaction databases
STRINGi | 243230.DR_0174 |
Genome annotation databases
EnsemblBacteriai | AAF09760; AAF09760; DR_0174 |
KEGGi | dra:DR_0174 |
PATRICi | fig|243230.17.peg.338 |
Phylogenomic databases
eggNOGi | COG0102, Bacteria |
HOGENOMi | CLU_082184_2_2_0 |
InParanoidi | Q9RXY1 |
OMAi | DFVVIIN |
OrthoDBi | 1822215at2 |
Miscellaneous databases
EvolutionaryTracei | Q9RXY1 |
Family and domain databases
CDDi | cd00392, Ribosomal_L13, 1 hit |
Gene3Di | 3.90.1180.10, 1 hit |
HAMAPi | MF_01366, Ribosomal_L13, 1 hit |
InterProi | View protein in InterPro IPR005822, Ribosomal_L13 IPR005823, Ribosomal_L13_bac-type IPR023563, Ribosomal_L13_CS IPR036899, Ribosomal_L13_sf |
PANTHERi | PTHR11545, PTHR11545, 1 hit |
Pfami | View protein in Pfam PF00572, Ribosomal_L13, 1 hit |
PIRSFi | PIRSF002181, Ribosomal_L13, 1 hit |
SUPFAMi | SSF52161, SSF52161, 1 hit |
TIGRFAMsi | TIGR01066, rplM_bact, 1 hit |
PROSITEi | View protein in PROSITE PS00783, RIBOSOMAL_L13, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | RL13_DEIRA | |
Accessioni | Q9RXY1Primary (citable) accession number: Q9RXY1 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | March 15, 2004 |
Last sequence update: | May 1, 2000 | |
Last modified: | December 2, 2020 | |
This is version 128 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
3D-structure, Direct protein sequencing, Reference proteomeDocuments
- PDB cross-references
Index of Protein Data Bank (PDB) cross-references - SIMILARITY comments
Index of protein domains and families - Ribosomal proteins
Ribosomal proteins families and list of entries