UniProtKB - Q9RXK2 (RL3_DEIRA)
Protein
50S ribosomal protein L3
Gene
rplC
Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Functioni
One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.By similarity
GO - Molecular functioni
- rRNA binding Source: UniProtKB-UniRule
- structural constituent of ribosome Source: GO_Central
GO - Biological processi
- translation Source: UniProtKB-UniRule
Keywordsi
Molecular function | Ribonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding |
Names & Taxonomyi
Protein namesi | Recommended name: 50S ribosomal protein L3 |
Gene namesi | Name:rplC Ordered Locus Names:DR_0311 |
Organismi | Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) |
Taxonomic identifieri | 243230 [NCBI] |
Taxonomic lineagei | Bacteria › Deinococcus-Thermus › Deinococci › Deinococcales › Deinococcaceae › Deinococcus › |
Proteomesi |
|
Subcellular locationi
GO - Cellular componenti
- cytosol Source: GO_Central
- cytosolic large ribosomal subunit Source: GO_Central
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000077097 | 1 – 211 | 50S ribosomal protein L3Add BLAST | 211 |
Interactioni
Subunit structurei
Part of the 50S ribosomal subunit.
Forms a cluster with proteins L14 and L19. Also contacts proteins L13 and L17.
6 PublicationsProtein-protein interaction databases
STRINGi | 243230.DR_0311 |
Structurei
Secondary structure
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details3D structure databases
SMRi | Q9RXK2 |
ModBasei | Search... |
PDBe-KBi | Search... |
Miscellaneous databases
EvolutionaryTracei | Q9RXK2 |
Family & Domainsi
Sequence similaritiesi
Belongs to the universal ribosomal protein uL3 family.Curated
Phylogenomic databases
eggNOGi | COG0087, Bacteria |
HOGENOMi | CLU_044142_4_1_0 |
InParanoidi | Q9RXK2 |
OMAi | KGMRMAG |
OrthoDBi | 1270636at2 |
Family and domain databases
HAMAPi | MF_01325_B, Ribosomal_L3_B, 1 hit |
InterProi | View protein in InterPro IPR000597, Ribosomal_L3 IPR019927, Ribosomal_L3_bac/org-type IPR019926, Ribosomal_L3_CS IPR009000, Transl_B-barrel_sf |
PANTHERi | PTHR11229, PTHR11229, 1 hit |
Pfami | View protein in Pfam PF00297, Ribosomal_L3, 1 hit |
SUPFAMi | SSF50447, SSF50447, 1 hit |
TIGRFAMsi | TIGR03625, L3_bact, 1 hit |
PROSITEi | View protein in PROSITE PS00474, RIBOSOMAL_L3, 1 hit |
i Sequence
Sequence statusi: Complete.
Q9RXK2-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MKGILGTKIG MTQIWKNDRA IPVTVVLAGP CPIVQRKTAQ TDGYEAVQIG
60 70 80 90 100
YAPKAERKVN KPMQGHFAKA GVAPTRILRE FRGFAPDGDS VNVDIFAEGE
110 120 130 140 150
KIDATGTSKG KGTQGVMKRW NFAGGPASHG SKKWHRRPGS IGQRKTPGRV
160 170 180 190 200
YKGKRMAGHM GMERVTVQNL EVVEIRAGEN LILVKGAIPG ANGGLVVLRS
210
AAKASAAKGG K
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AE000513 Genomic DNA Translation: AAF09892.1 |
PIRi | G75533 |
RefSeqi | NP_294034.1, NC_001263.1 WP_010886956.1, NZ_CP015081.1 |
Genome annotation databases
EnsemblBacteriai | AAF09892; AAF09892; DR_0311 |
KEGGi | dra:DR_0311 |
PATRICi | fig|243230.17.peg.477 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AE000513 Genomic DNA Translation: AAF09892.1 |
PIRi | G75533 |
RefSeqi | NP_294034.1, NC_001263.1 WP_010886956.1, NZ_CP015081.1 |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
1NKW | X-ray | 3.10 | B | 1-211 | [»] | |
1NWX | X-ray | 3.50 | B | 1-211 | [»] | |
1NWY | X-ray | 3.30 | B | 1-211 | [»] | |
1SM1 | X-ray | 3.42 | B | 1-211 | [»] | |
1XBP | X-ray | 3.50 | B | 1-211 | [»] | |
2OGM | X-ray | 3.50 | B | 1-211 | [»] | |
2OGN | X-ray | 3.56 | B | 1-211 | [»] | |
2OGO | X-ray | 3.66 | B | 1-211 | [»] | |
2ZJP | X-ray | 3.70 | B | 1-211 | [»] | |
2ZJQ | X-ray | 3.30 | B | 1-211 | [»] | |
2ZJR | X-ray | 2.91 | B | 1-211 | [»] | |
3CF5 | X-ray | 3.30 | B | 1-211 | [»] | |
3DLL | X-ray | 3.50 | B | 1-211 | [»] | |
3PIO | X-ray | 3.25 | B | 1-211 | [»] | |
3PIP | X-ray | 3.45 | B | 1-211 | [»] | |
4IO9 | X-ray | 3.20 | B | 1-211 | [»] | |
4IOA | X-ray | 3.20 | B | 1-211 | [»] | |
4IOC | X-ray | 3.60 | B | 1-211 | [»] | |
4U67 | X-ray | 3.65 | B | 1-211 | [»] | |
4V49 | X-ray | 8.70 | B | 1-205 | [»] | |
4V4A | X-ray | 9.50 | B | 1-205 | [»] | |
4V4G | X-ray | 11.50 | E | 1-205 | [»] | |
4WFN | X-ray | 3.54 | B | 1-211 | [»] | |
5DM6 | X-ray | 2.90 | B | 1-205 | [»] | |
5DM7 | X-ray | 3.00 | B | 1-205 | [»] | |
5JVG | X-ray | 3.43 | B | 1-211 | [»] | |
5JVH | X-ray | 3.58 | B | 1-211 | [»] | |
SMRi | Q9RXK2 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Protein-protein interaction databases
STRINGi | 243230.DR_0311 |
Genome annotation databases
EnsemblBacteriai | AAF09892; AAF09892; DR_0311 |
KEGGi | dra:DR_0311 |
PATRICi | fig|243230.17.peg.477 |
Phylogenomic databases
eggNOGi | COG0087, Bacteria |
HOGENOMi | CLU_044142_4_1_0 |
InParanoidi | Q9RXK2 |
OMAi | KGMRMAG |
OrthoDBi | 1270636at2 |
Miscellaneous databases
EvolutionaryTracei | Q9RXK2 |
Family and domain databases
HAMAPi | MF_01325_B, Ribosomal_L3_B, 1 hit |
InterProi | View protein in InterPro IPR000597, Ribosomal_L3 IPR019927, Ribosomal_L3_bac/org-type IPR019926, Ribosomal_L3_CS IPR009000, Transl_B-barrel_sf |
PANTHERi | PTHR11229, PTHR11229, 1 hit |
Pfami | View protein in Pfam PF00297, Ribosomal_L3, 1 hit |
SUPFAMi | SSF50447, SSF50447, 1 hit |
TIGRFAMsi | TIGR03625, L3_bact, 1 hit |
PROSITEi | View protein in PROSITE PS00474, RIBOSOMAL_L3, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | RL3_DEIRA | |
Accessioni | Q9RXK2Primary (citable) accession number: Q9RXK2 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | February 16, 2004 |
Last sequence update: | May 1, 2000 | |
Last modified: | December 2, 2020 | |
This is version 116 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
3D-structure, Direct protein sequencing, Reference proteomeDocuments
- PDB cross-references
Index of Protein Data Bank (PDB) cross-references - SIMILARITY comments
Index of protein domains and families - Ribosomal proteins
Ribosomal proteins families and list of entries