UniProtKB - Q9RXK0 (RL23_DEIRA)
Protein
50S ribosomal protein L23
Gene
rplW
Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Functioni
One of the early assembly protein (By similarity) it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. Forms the main docking site for trigger factor binding to the ribosome (PubMed:16091460 and PubMed:16271892).By similarity2 Publications
GO - Molecular functioni
- rRNA binding Source: UniProtKB-UniRule
- structural constituent of ribosome Source: GO_Central
GO - Biological processi
- ribosomal large subunit assembly Source: GO_Central
- translation Source: UniProtKB-UniRule
Keywordsi
Molecular function | Ribonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding |
Names & Taxonomyi
Protein namesi | Recommended name: 50S ribosomal protein L23UniRule annotation |
Gene namesi | Name:rplWUniRule annotation Ordered Locus Names:DR_0313 |
Organismi | Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) |
Taxonomic identifieri | 243230 [NCBI] |
Taxonomic lineagei | Bacteria › Deinococcus-Thermus › Deinococci › Deinococcales › Deinococcaceae › Deinococcus › |
Proteomesi |
|
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Initiator methioninei | Removed1 Publication | |||
ChainiPRO_0000129406 | 2 – 95 | 50S ribosomal protein L23Add BLAST | 94 |
Structurei
Secondary structure
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details3D structure databases
SMRi | Q9RXK0 |
ModBasei | Search... |
PDBe-KBi | Search... |
Miscellaneous databases
EvolutionaryTracei | Q9RXK0 |
Family & Domainsi
Sequence similaritiesi
Belongs to the universal ribosomal protein uL23 family.UniRule annotation
Phylogenomic databases
eggNOGi | COG0089, Bacteria |
HOGENOMi | CLU_037562_3_1_0 |
InParanoidi | Q9RXK0 |
OMAi | FEVDHRA |
OrthoDBi | 1978865at2 |
Family and domain databases
Gene3Di | 3.30.70.330, 1 hit |
HAMAPi | MF_01369_B, Ribosomal_L23_B, 1 hit |
InterProi | View protein in InterPro IPR012677, Nucleotide-bd_a/b_plait_sf IPR012678, Ribosomal_L23/L15e_core_dom_sf IPR001014, Ribosomal_L23/L25_CS IPR013025, Ribosomal_L25/23 |
Pfami | View protein in Pfam PF00276, Ribosomal_L23, 1 hit |
SUPFAMi | SSF54189, SSF54189, 1 hit |
PROSITEi | View protein in PROSITE PS00050, RIBOSOMAL_L23, 1 hit |
i Sequence
Sequence statusi: Complete.
: The displayed sequence is further processed into a mature form. Sequence processingi
Q9RXK0-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MSHYDILQAP VISEKAYSAM ERGVYSFWVS PKATKTEIKD AIQQAFGVRV
60 70 80 90
IGISTMNVPG KRKRVGRFIG QRNDRKKAIV RLAEGQSIEA LAGQA
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AE000513 Genomic DNA Translation: AAF09894.1 |
PIRi | A75534 |
RefSeqi | NP_294036.1, NC_001263.1 WP_010886958.1, NZ_CP015081.1 |
Genome annotation databases
EnsemblBacteriai | AAF09894; AAF09894; DR_0313 |
KEGGi | dra:DR_0313 |
PATRICi | fig|243230.17.peg.479 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AE000513 Genomic DNA Translation: AAF09894.1 |
PIRi | A75534 |
RefSeqi | NP_294036.1, NC_001263.1 WP_010886958.1, NZ_CP015081.1 |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
1GS2 | model | - | R | 2-94 | [»] | |
1NKW | X-ray | 3.10 | R | 1-95 | [»] | |
1NWX | X-ray | 3.50 | R | 2-95 | [»] | |
1NWY | X-ray | 3.30 | R | 2-95 | [»] | |
1SM1 | X-ray | 3.42 | R | 1-95 | [»] | |
1XBP | X-ray | 3.50 | R | 2-95 | [»] | |
2AAR | X-ray | 3.50 | R | 1-95 | [»] | |
2D3O | X-ray | 3.35 | R | 1-95 | [»] | |
2ZJP | X-ray | 3.70 | Q | 1-95 | [»] | |
2ZJQ | X-ray | 3.30 | Q | 1-95 | [»] | |
2ZJR | X-ray | 2.91 | Q | 1-95 | [»] | |
3CF5 | X-ray | 3.30 | Q | 1-95 | [»] | |
3DLL | X-ray | 3.50 | Q | 1-95 | [»] | |
3PIO | X-ray | 3.25 | Q | 1-95 | [»] | |
3PIP | X-ray | 3.45 | Q | 1-95 | [»] | |
4IO9 | X-ray | 3.20 | Q | 1-95 | [»] | |
4IOA | X-ray | 3.20 | Q | 1-95 | [»] | |
4IOC | X-ray | 3.60 | Q | 1-95 | [»] | |
4U67 | X-ray | 3.65 | Q | 1-95 | [»] | |
4V49 | X-ray | 8.70 | R | 2-94 | [»] | |
4V4A | X-ray | 9.50 | R | 2-94 | [»] | |
4V4G | X-ray | 11.50 | U | 2-94 | [»] | |
4WFN | X-ray | 3.54 | Q | 1-95 | [»] | |
5DM6 | X-ray | 2.90 | Q | 2-94 | [»] | |
5DM7 | X-ray | 3.00 | Q | 2-94 | [»] | |
5JVG | X-ray | 3.43 | Q | 1-95 | [»] | |
5JVH | X-ray | 3.58 | Q | 1-95 | [»] | |
SMRi | Q9RXK0 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Protein-protein interaction databases
STRINGi | 243230.DR_0313 |
Genome annotation databases
EnsemblBacteriai | AAF09894; AAF09894; DR_0313 |
KEGGi | dra:DR_0313 |
PATRICi | fig|243230.17.peg.479 |
Phylogenomic databases
eggNOGi | COG0089, Bacteria |
HOGENOMi | CLU_037562_3_1_0 |
InParanoidi | Q9RXK0 |
OMAi | FEVDHRA |
OrthoDBi | 1978865at2 |
Miscellaneous databases
EvolutionaryTracei | Q9RXK0 |
Family and domain databases
Gene3Di | 3.30.70.330, 1 hit |
HAMAPi | MF_01369_B, Ribosomal_L23_B, 1 hit |
InterProi | View protein in InterPro IPR012677, Nucleotide-bd_a/b_plait_sf IPR012678, Ribosomal_L23/L15e_core_dom_sf IPR001014, Ribosomal_L23/L25_CS IPR013025, Ribosomal_L25/23 |
Pfami | View protein in Pfam PF00276, Ribosomal_L23, 1 hit |
SUPFAMi | SSF54189, SSF54189, 1 hit |
PROSITEi | View protein in PROSITE PS00050, RIBOSOMAL_L23, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | RL23_DEIRA | |
Accessioni | Q9RXK0Primary (citable) accession number: Q9RXK0 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | March 15, 2004 |
Last sequence update: | January 23, 2007 | |
Last modified: | April 7, 2021 | |
This is version 129 of the entry and version 3 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
3D-structure, Direct protein sequencing, Reference proteomeDocuments
- Ribosomal proteins
Ribosomal proteins families and list of entries - PDB cross-references
Index of Protein Data Bank (PDB) cross-references - SIMILARITY comments
Index of protein domains and families