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Protein

50S ribosomal protein L20

Gene

rplT

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Binds directly to 23S rRNA, probably serving to organize its structure.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L20
Gene namesi
Name:rplT
Ordered Locus Names:DR_2004
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001771531 – 11850S ribosomal protein L20Add BLAST118

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts proteins L13 and L21.6 Publications

Protein-protein interaction databases

STRINGi243230.DR_2004

Structurei

Secondary structure

1118
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

ProteinModelPortaliQ9RSW7
SMRiQ9RSW7
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9RSW7

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4108YZX Bacteria
COG0292 LUCA
HOGENOMiHOG000035046
InParanoidiQ9RSW7
KOiK02887
OMAiDLAMNHP
OrthoDBiPOG091H01B4

Family and domain databases

CDDicd07026 Ribosomal_L20, 1 hit
Gene3Di1.10.1900.20, 1 hit
HAMAPiMF_00382 Ribosomal_L20, 1 hit
InterProiView protein in InterPro
IPR005813 Ribosomal_L20
IPR035566 Ribosomal_protein_L20_C
PANTHERiPTHR10986 PTHR10986, 1 hit
PfamiView protein in Pfam
PF00453 Ribosomal_L20, 1 hit
PRINTSiPR00062 RIBOSOMALL20
SUPFAMiSSF74731 SSF74731, 1 hit
TIGRFAMsiTIGR01032 rplT_bact, 1 hit
PROSITEiView protein in PROSITE
PS00937 RIBOSOMAL_L20, 1 hit

Sequencei

Sequence statusi: Complete.

Q9RSW7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MPRAKTGIVR RRRHKKVLKR AKGFWGSRSK QYRNAFQTLL NAATYEYRDR
60 70 80 90 100
RNKKRDFRRL WIQRINAGAR LHGMNYSTFI NGLKRANIDL NRKVLADIAA
110
REPEAFKALV DASRNARQ
Length:118
Mass (Da):13,957
Last modified:May 1, 2000 - v1
Checksum:i94DB4F24ECD78DB6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA Translation: AAF11553.1
PIRiA75326
RefSeqiNP_295727.1, NC_001263.1
WP_010888637.1, NZ_CP015081.1

Genome annotation databases

EnsemblBacteriaiAAF11553; AAF11553; DR_2004
GeneIDi1798901
KEGGidra:DR_2004
PATRICifig|243230.17.peg.2227

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA Translation: AAF11553.1
PIRiA75326
RefSeqiNP_295727.1, NC_001263.1
WP_010888637.1, NZ_CP015081.1

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10O1-118[»]
1NWXX-ray3.50O1-118[»]
1NWYX-ray3.30O1-118[»]
1SM1X-ray3.42O1-118[»]
1XBPX-ray3.50O1-118[»]
2ZJPX-ray3.70N1-118[»]
2ZJQX-ray3.30N1-118[»]
2ZJRX-ray2.91N1-118[»]
3CF5X-ray3.30N1-118[»]
3DLLX-ray3.50N1-118[»]
3PIOX-ray3.25N1-118[»]
3PIPX-ray3.45N1-118[»]
4IO9X-ray3.20N1-118[»]
4IOAX-ray3.20N1-118[»]
4IOCX-ray3.60N1-118[»]
4U67X-ray3.65N1-118[»]
4V49X-ray8.70O2-118[»]
4V4AX-ray9.50O2-118[»]
4V4GX-ray11.50R2-118[»]
4V4TX-ray6.46U1-118[»]
4WFNX-ray3.54N1-118[»]
5DM6X-ray2.90N2-118[»]
5DM7X-ray3.00N2-118[»]
5JVGX-ray3.43N1-118[»]
5JVHX-ray3.58N1-118[»]
ProteinModelPortaliQ9RSW7
SMRiQ9RSW7
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243230.DR_2004

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF11553; AAF11553; DR_2004
GeneIDi1798901
KEGGidra:DR_2004
PATRICifig|243230.17.peg.2227

Phylogenomic databases

eggNOGiENOG4108YZX Bacteria
COG0292 LUCA
HOGENOMiHOG000035046
InParanoidiQ9RSW7
KOiK02887
OMAiDLAMNHP
OrthoDBiPOG091H01B4

Miscellaneous databases

EvolutionaryTraceiQ9RSW7

Family and domain databases

CDDicd07026 Ribosomal_L20, 1 hit
Gene3Di1.10.1900.20, 1 hit
HAMAPiMF_00382 Ribosomal_L20, 1 hit
InterProiView protein in InterPro
IPR005813 Ribosomal_L20
IPR035566 Ribosomal_protein_L20_C
PANTHERiPTHR10986 PTHR10986, 1 hit
PfamiView protein in Pfam
PF00453 Ribosomal_L20, 1 hit
PRINTSiPR00062 RIBOSOMALL20
SUPFAMiSSF74731 SSF74731, 1 hit
TIGRFAMsiTIGR01032 rplT_bact, 1 hit
PROSITEiView protein in PROSITE
PS00937 RIBOSOMAL_L20, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRL20_DEIRA
AccessioniPrimary (citable) accession number: Q9RSW7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 1, 2001
Last sequence update: May 1, 2000
Last modified: October 10, 2018
This is version 122 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families
  3. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
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Main funding by: National Institutes of Health

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