UniProtKB - Q9RSW7 (RL20_DEIRA)

BLAST

>sp|Q9RSW7|RL20_DEIRA 50S ribosomal protein L20 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) OX=243230 GN=rplT PE=1 SV=1
MPRAKTGIVRRRRHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRL
WIQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKALVDASRNARQ

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History
Entry version 122 (10 Oct 2018)
Sequence version 1 (01 May 2000)
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Protein

50S ribosomal protein L20

Gene

rplT

Organism

Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)

Status

Reviewed-Annotation score: -Experimental evidence at protein levelⁱ

Functionⁱ

Binds directly to 23S rRNA, probably serving to organize its structure.

GO - Molecular functionⁱ

rRNA binding Source: UniProtKB-UniRule
structural constituent of ribosome Source: GO_Central

View the complete GO annotation on QuickGO ...

GO - Biological processⁱ

ribosomal large subunit assembly Source: GO_Central
translation Source: InterPro

View the complete GO annotation on QuickGO ...

Keywordsⁱ

Molecular function	Ribonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Molecular function

Ribonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyⁱ

Protein namesⁱ	Recommended name: 50S ribosomal protein L20
Gene namesⁱ	Name:rplT Ordered Locus Names:DR_2004
Organismⁱ	Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifierⁱ	243230 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Bacteria › Terrabacteria group › Deinococcus-Thermus › Deinococci › Deinococcales › Deinococcaceae › Deinococcus › Deinococcus radiodurans
Proteomesⁱ	UP000002524 Componentⁱ: Chromosome I

Subcellular locationⁱ

GO - Cellular componentⁱ

cytosolic large ribosomal subunit Source: GO_Central

View the complete GO annotation on QuickGO ...

PTM / Processingⁱ

Molecule processing

Feature key	Position(s)	DescriptionActions	Graphical view	Length
ChainⁱPRO_0000177153	1 – 118	50S ribosomal protein L20Add BLAST		118

Interactionⁱ

Subunit structureⁱ

Part of the 50S ribosomal subunit. Contacts proteins L13 and L21.6 Publications

Protein-protein interaction databases

STRINGⁱ	243230.DR_2004

STRINGⁱ

243230.DR_2004

Structureⁱ

Secondary structure

Legend: HelixTurnBeta strandPDB Structure known for this area

Feature key	Position(s)	DescriptionActions	Length
Helixⁱ	9 – 20	Combined sources	12
Turnⁱ	21 – 23	Combined sources	3
Helixⁱ	26 – 29	Combined sources	4
Helixⁱ	32 – 71	Combined sources	40
Helixⁱ	76 – 85	Combined sources	10
Helixⁱ	92 – 101	Combined sources	10
Helixⁱ	103 – 117	Combined sources	15

Show more details

3D structure databases

ProteinModelPortalⁱ	Q9RSW7
SMRⁱ	Q9RSW7
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Miscellaneous databases

EvolutionaryTraceⁱ	Q9RSW7

EvolutionaryTraceⁱ

Q9RSW7

Family & Domainsⁱ

Sequence similaritiesⁱ

Belongs to the bacterial ribosomal protein bL20 family.Curated

Phylogenomic databases

eggNOGⁱ	ENOG4108YZX Bacteria COG0292 LUCA
HOGENOMⁱ	HOG000035046
InParanoidⁱ	Q9RSW7
KEGG Orthology (KO) More...KOⁱ	K02887
OMAⁱ	DLAMNHP
Database of Orthologous Groups More...OrthoDBⁱ	POG091H01B4

Family and domain databases

Conserved Domains Database More...CDDⁱ	cd07026 Ribosomal_L20, 1 hit
Gene3Dⁱ	1.10.1900.20, 1 hit
HAMAPⁱ	MF_00382 Ribosomal_L20, 1 hit
InterProⁱ	View protein in InterPro IPR005813 Ribosomal_L20 IPR035566 Ribosomal_protein_L20_C
PANTHERⁱ	PTHR10986 PTHR10986, 1 hit
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF00453 Ribosomal_L20, 1 hit
PRINTSⁱ	PR00062 RIBOSOMALL20
SUPFAMⁱ	SSF74731 SSF74731, 1 hit
TIGRFAMsⁱ	TIGR01032 rplT_bact, 1 hit
PROSITEⁱ	View protein in PROSITE PS00937 RIBOSOMAL_L20, 1 hit

Sequenceⁱ

Sequence statusⁱ: Complete.

Q9RSW7-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MPRAKTGIVR RRRHKKVLKR AKGFWGSRSK QYRNAFQTLL NAATYEYRDR 
        60         70         80         90        100
RNKKRDFRRL WIQRINAGAR LHGMNYSTFI NGLKRANIDL NRKVLADIAA 
       110 
REPEAFKALV DASRNARQ

Length:118

Mass (Da):13,957

Last modified:May 1, 2000 - v1

Checksum:ⁱ94DB4F24ECD78DB6

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AE000513 Genomic DNA Translation: AAF11553.1
PIRⁱ	A75326
NCBI Reference Sequences More...RefSeqⁱ	NP_295727.1, NC_001263.1 WP_010888637.1, NZ_CP015081.1

Genome annotation databases

EnsemblBacteriaⁱ	AAF11553; AAF11553; DR_2004
GeneIDⁱ	1798901
KEGGⁱ	dra:DR_2004
PATRICⁱ	fig\|243230.17.peg.2227

Protein	Similar proteins		Species	Score	Length	Source
Q9RSW7	50S ribosomal protein L20		DEIGD		119	UniRef90_Q9RSW7
LSU ribosomal protein L20P		Deinococcus yavapaiensis KR-236		123
50S ribosomal protein L20		DEIPD		122
50S ribosomal protein L20		Deinococcus phoenicis		119
50S ribosomal protein L20		Deinococcus aerius		119
+6

Protein	Similar proteins		Species	Score	Length	Source
Q9RSW7	50S ribosomal protein L20		DEIGD		119	UniRef50_Q9RSW7
50S ribosomal protein L20		CAMJD		117
50S ribosomal protein L20		CAMLR		117
50S ribosomal protein L20		CAMJ8		117
50S ribosomal protein L20		CAMJE		117
+3221

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AE000513 Genomic DNA Translation: AAF11553.1
PIRⁱ	A75326
RefSeqⁱ	NP_295727.1, NC_001263.1 WP_010888637.1, NZ_CP015081.1

3D structure databases

Select the link destinations: Protein Data Bank Europe More...PDBeⁱ Protein Data Bank RCSB More...RCSB PDBⁱ Protein Data Bank Japan More...PDBjⁱ Links Updated	PDB entry	Method	Resolution (Å)	Chain	Positions	PDBsum
	1NKW	X-ray	3.10	O	1-118	[»]
	1NWX	X-ray	3.50	O	1-118	[»]
	1NWY	X-ray	3.30	O	1-118	[»]
	1SM1	X-ray	3.42	O	1-118	[»]
	1XBP	X-ray	3.50	O	1-118	[»]
	2ZJP	X-ray	3.70	N	1-118	[»]
	2ZJQ	X-ray	3.30	N	1-118	[»]
	2ZJR	X-ray	2.91	N	1-118	[»]
	3CF5	X-ray	3.30	N	1-118	[»]
	3DLL	X-ray	3.50	N	1-118	[»]
	3PIO	X-ray	3.25	N	1-118	[»]
	3PIP	X-ray	3.45	N	1-118	[»]
	4IO9	X-ray	3.20	N	1-118	[»]
	4IOA	X-ray	3.20	N	1-118	[»]
	4IOC	X-ray	3.60	N	1-118	[»]
	4U67	X-ray	3.65	N	1-118	[»]
	4V49	X-ray	8.70	O	2-118	[»]
	4V4A	X-ray	9.50	O	2-118	[»]
	4V4G	X-ray	11.50	R	2-118	[»]
	4V4T	X-ray	6.46	U	1-118	[»]
	4WFN	X-ray	3.54	N	1-118	[»]
	5DM6	X-ray	2.90	N	2-118	[»]
	5DM7	X-ray	3.00	N	2-118	[»]
	5JVG	X-ray	3.43	N	1-118	[»]
	5JVH	X-ray	3.58	N	1-118	[»]
ProteinModelPortalⁱ	Q9RSW7
SMRⁱ	Q9RSW7
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protein-protein interaction databases

STRINGⁱ	243230.DR_2004

STRINGⁱ

243230.DR_2004

Protocols and materials databases

Structural Biology Knowledgebase	Search...

Structural Biology Knowledgebase

Search...

Genome annotation databases

EnsemblBacteriaⁱ	AAF11553; AAF11553; DR_2004
GeneIDⁱ	1798901
KEGGⁱ	dra:DR_2004
PATRICⁱ	fig\|243230.17.peg.2227

Phylogenomic databases

eggNOGⁱ	ENOG4108YZX Bacteria COG0292 LUCA
HOGENOMⁱ	HOG000035046
InParanoidⁱ	Q9RSW7
KOⁱ	K02887
OMAⁱ	DLAMNHP
OrthoDBⁱ	POG091H01B4

Miscellaneous databases

EvolutionaryTraceⁱ	Q9RSW7

EvolutionaryTraceⁱ

Q9RSW7

Family and domain databases

CDDⁱ	cd07026 Ribosomal_L20, 1 hit
Gene3Dⁱ	1.10.1900.20, 1 hit
HAMAPⁱ	MF_00382 Ribosomal_L20, 1 hit
InterProⁱ	View protein in InterPro IPR005813 Ribosomal_L20 IPR035566 Ribosomal_protein_L20_C
PANTHERⁱ	PTHR10986 PTHR10986, 1 hit
Pfamⁱ	View protein in Pfam PF00453 Ribosomal_L20, 1 hit
PRINTSⁱ	PR00062 RIBOSOMALL20
SUPFAMⁱ	SSF74731 SSF74731, 1 hit
TIGRFAMsⁱ	TIGR01032 rplT_bact, 1 hit
PROSITEⁱ	View protein in PROSITE PS00937 RIBOSOMAL_L20, 1 hit
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ	RL20_DEIRA
Accessionⁱ	Q9RSW7Primary (citable) accession number: Q9RSW7
Entry historyⁱ	Integrated into UniProtKB/Swiss-Prot:	June 1, 2001
	Last sequence update:	May 1, 2000
	Last modified:	October 10, 2018
	This is version 122 of the entry and version 1 of the sequence. See complete history.
Entry statusⁱ	Reviewed (UniProtKB/Swiss-Prot)
Annotation program	Prokaryotic Protein Annotation Program

UniProtKB

UniParc

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Supporting data

UniProtKB - Q9RSW7 (RL20_DEIRA)

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50S ribosomal protein L20

rplT

Select a section on the left to see content.

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

GO - Cellular componenti

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

3D structure databases

Miscellaneous databases

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Phylogenomic databases

Family and domain databases

Sequence databases

Genome annotation databases

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protein-protein interaction databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Miscellaneous databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

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Functionⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

GO - Cellular componentⁱ

PTM / Processingⁱ

Interactionⁱ

Structureⁱ

Family & Domainsⁱ

Sequence similaritiesⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ