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UniProtKB - Q9RSL3 (RL6_DEIRA)
Protein
50S ribosomal protein L6
Gene
rplF
Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Functioni
It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center (By similarity).
This protein binds to the 23S rRNA, and is important in its secondary structure.
By similarityGO - Molecular functioni
- rRNA binding Source: UniProtKB-UniRule
- structural constituent of ribosome Source: GO_Central
GO - Biological processi
- cytoplasmic translation Source: GO_Central
Keywordsi
Molecular function | Ribonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding |
Names & Taxonomyi
Protein namesi | Recommended name: 50S ribosomal protein L6UniRule annotation |
Gene namesi | Name:rplFUniRule annotation Ordered Locus Names:DR_2111 |
Organismi | Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) |
Taxonomic identifieri | 243230 [NCBI] |
Taxonomic lineagei | Bacteria › Deinococcus-Thermus › Deinococci › Deinococcales › Deinococcaceae › Deinococcus › |
Proteomesi |
|
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000131047 | 1 – 185 | 50S ribosomal protein L6Add BLAST | 185 |
Interactioni
Subunit structurei
Part of the 50S ribosomal subunit.
UniRule annotation6 PublicationsProtein-protein interaction databases
IntActi | Q9RSL3, 1 interactor |
STRINGi | 243230.DR_2111 |
Structurei
Secondary structure
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details3D structure databases
AlphaFoldDBi | Q9RSL3 |
SMRi | Q9RSL3 |
ModBasei | Search... |
PDBe-KBi | Search... |
Miscellaneous databases
EvolutionaryTracei | Q9RSL3 |
Family & Domainsi
Sequence similaritiesi
Belongs to the universal ribosomal protein uL6 family.UniRule annotation
Phylogenomic databases
eggNOGi | COG0097, Bacteria |
HOGENOMi | CLU_065464_1_2_0 |
InParanoidi | Q9RSL3 |
OMAi | KPDPYKG |
OrthoDBi | 1398618at2 |
Family and domain databases
Gene3Di | 3.90.930.12, 2 hits |
HAMAPi | MF_01365_B, Ribosomal_L6_B, 1 hit |
InterProi | View protein in InterPro IPR000702, Ribosomal_L6 IPR020040, Ribosomal_L6_a/b-dom IPR036789, Ribosomal_L6_a/b-dom_sf IPR019906, Ribosomal_L6_bac-type |
PANTHERi | PTHR11655, PTHR11655, 1 hit PTHR11655:SF14, PTHR11655:SF14, 1 hit |
Pfami | View protein in Pfam PF00347, Ribosomal_L6, 2 hits |
PIRSFi | PIRSF002162, Ribosomal_L6, 1 hit |
PRINTSi | PR00059, RIBOSOMALL6 |
SUPFAMi | SSF56053, SSF56053, 2 hits |
TIGRFAMsi | TIGR03654, L6_bact, 1 hit |
i Sequence
Sequence statusi: Complete.
Q9RSL3-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MSRIGKQPIA VPSGVTVNAQ DGVFKVKGPK GELTVPYNTE LTVRQDGDQL
60 70 80 90 100
LVERPSDAQK HRALHGLTRT LVANAVKGVS DGYTINLELR GVGFRAKLTG
110 120 130 140 150
KALEMNIGYS HPVIIEPPAG VTFAVPEPTR IDVSGIDKQL VGQVAANVRK
160 170 180
VRKPDAYHGK GVRFVGEQIA LKAGKAGATG GKGKK
Sequence cautioni
The sequence AAF11660 differs from that shown. Reason: Erroneous initiation.Curated
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AE000513 Genomic DNA Translation: AAF11660.1 Different initiation. |
PIRi | B75314 |
RefSeqi | NP_295834.2, NC_001263.1 WP_010888742.1, NZ_CP015081.1 |
Genome annotation databases
EnsemblBacteriai | AAF11660; AAF11660; DR_2111 |
KEGGi | dra:DR_2111 |
PATRICi | fig|243230.17.peg.2334 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AE000513 Genomic DNA Translation: AAF11660.1 Different initiation. |
PIRi | B75314 |
RefSeqi | NP_295834.2, NC_001263.1 WP_010888742.1, NZ_CP015081.1 |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
1NKW | X-ray | 3.10 | E | 1-185 | [»] | |
1NWX | X-ray | 3.50 | E | 1-185 | [»] | |
1NWY | X-ray | 3.30 | E | 1-185 | [»] | |
1SM1 | X-ray | 3.42 | E | 1-185 | [»] | |
1XBP | X-ray | 3.50 | E | 1-185 | [»] | |
2ZJP | X-ray | 3.70 | E | 1-185 | [»] | |
2ZJQ | X-ray | 3.30 | E | 1-185 | [»] | |
2ZJR | X-ray | 2.91 | E | 1-185 | [»] | |
3CF5 | X-ray | 3.30 | E | 1-185 | [»] | |
3DLL | X-ray | 3.50 | E | 1-185 | [»] | |
3PIO | X-ray | 3.25 | E | 1-185 | [»] | |
3PIP | X-ray | 3.45 | E | 1-185 | [»] | |
4IO9 | X-ray | 3.20 | E | 1-185 | [»] | |
4IOA | X-ray | 3.20 | E | 1-185 | [»] | |
4IOC | X-ray | 3.60 | E | 1-185 | [»] | |
4U67 | X-ray | 3.65 | E | 1-185 | [»] | |
4V49 | X-ray | 8.70 | E | 5-181 | [»] | |
4V4A | X-ray | 9.50 | E | 5-181 | [»] | |
4V4G | X-ray | 11.50 | H | 5-181 | [»] | |
4WFN | X-ray | 3.54 | E | 1-185 | [»] | |
5DM6 | X-ray | 2.90 | E | 5-175 | [»] | |
5DM7 | X-ray | 3.00 | E | 5-175 | [»] | |
5JVG | X-ray | 3.43 | E | 1-185 | [»] | |
5JVH | X-ray | 3.58 | E | 1-185 | [»] | |
7A0R | X-ray | 3.30 | E | 5-175 | [»] | |
7A0S | X-ray | 3.22 | E | 5-175 | [»] | |
7A18 | X-ray | 3.40 | E | 5-175 | [»] | |
AlphaFoldDBi | Q9RSL3 | |||||
SMRi | Q9RSL3 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Protein-protein interaction databases
IntActi | Q9RSL3, 1 interactor |
STRINGi | 243230.DR_2111 |
Genome annotation databases
EnsemblBacteriai | AAF11660; AAF11660; DR_2111 |
KEGGi | dra:DR_2111 |
PATRICi | fig|243230.17.peg.2334 |
Phylogenomic databases
eggNOGi | COG0097, Bacteria |
HOGENOMi | CLU_065464_1_2_0 |
InParanoidi | Q9RSL3 |
OMAi | KPDPYKG |
OrthoDBi | 1398618at2 |
Miscellaneous databases
EvolutionaryTracei | Q9RSL3 |
Family and domain databases
Gene3Di | 3.90.930.12, 2 hits |
HAMAPi | MF_01365_B, Ribosomal_L6_B, 1 hit |
InterProi | View protein in InterPro IPR000702, Ribosomal_L6 IPR020040, Ribosomal_L6_a/b-dom IPR036789, Ribosomal_L6_a/b-dom_sf IPR019906, Ribosomal_L6_bac-type |
PANTHERi | PTHR11655, PTHR11655, 1 hit PTHR11655:SF14, PTHR11655:SF14, 1 hit |
Pfami | View protein in Pfam PF00347, Ribosomal_L6, 2 hits |
PIRSFi | PIRSF002162, Ribosomal_L6, 1 hit |
PRINTSi | PR00059, RIBOSOMALL6 |
SUPFAMi | SSF56053, SSF56053, 2 hits |
TIGRFAMsi | TIGR03654, L6_bact, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | RL6_DEIRA | |
Accessioni | Q9RSL3Primary (citable) accession number: Q9RSL3 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | March 15, 2004 |
Last sequence update: | March 15, 2004 | |
Last modified: | May 25, 2022 | |
This is version 128 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
3D-structure, Direct protein sequencing, Reference proteomeDocuments
- Ribosomal proteins
Ribosomal proteins families and list of entries - PDB cross-references
Index of Protein Data Bank (PDB) cross-references - SIMILARITY comments
Index of protein domains and families