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UniProtKB - Q9RSL0 (RL30_DEIRA)
Protein
50S ribosomal protein L30
Gene
rpmD
Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Functioni
Binds the 5S and 23S rRNAs.
GO - Molecular functioni
- rRNA binding Source: UniProtKB-KW
- structural constituent of ribosome Source: InterPro
GO - Biological processi
- translation Source: UniProtKB-UniRule
Keywordsi
Molecular function | Ribonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding |
Names & Taxonomyi
Protein namesi | Recommended name: 50S ribosomal protein L30UniRule annotation |
Gene namesi | Name:rpmDUniRule annotation Ordered Locus Names:DR_2114 |
Organismi | Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) |
Taxonomic identifieri | 243230 [NCBI] |
Taxonomic lineagei | Bacteria › Deinococcus-Thermus › Deinococci › Deinococcales › Deinococcaceae › Deinococcus › |
Proteomesi |
|
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000104589 | 1 – 55 | 50S ribosomal protein L30Add BLAST | 55 |
Interactioni
Subunit structurei
Part of the 50S ribosomal subunit.
UniRule annotation6 PublicationsProtein-protein interaction databases
IntActi | Q9RSL0, 1 interactor |
STRINGi | 243230.DR_2114 |
Structurei
Secondary structure
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details3D structure databases
AlphaFoldDBi | Q9RSL0 |
SMRi | Q9RSL0 |
ModBasei | Search... |
PDBe-KBi | Search... |
Miscellaneous databases
EvolutionaryTracei | Q9RSL0 |
Family & Domainsi
Sequence similaritiesi
Belongs to the universal ribosomal protein uL30 family.UniRule annotation
Phylogenomic databases
eggNOGi | COG1841, Bacteria |
HOGENOMi | CLU_131047_2_1_0 |
InParanoidi | Q9RSL0 |
OMAi | GKQNQRD |
OrthoDBi | 2084745at2 |
Family and domain databases
CDDi | cd01658, Ribosomal_L30, 1 hit |
Gene3Di | 3.30.1390.20, 1 hit |
HAMAPi | MF_01371_B, Ribosomal_L30_B, 1 hit |
InterProi | View protein in InterPro IPR036919, L30_ferredoxin-like_sf IPR005996, Ribosomal_L30_bac-type IPR016082, Ribosomal_L30_ferredoxin-like |
PANTHERi | PTHR15892, PTHR15892, 1 hit |
Pfami | View protein in Pfam PF00327, Ribosomal_L30, 1 hit |
PIRSFi | PIRSF002211, Ribosomal_L30_bac-type, 1 hit |
SUPFAMi | SSF55129, SSF55129, 1 hit |
TIGRFAMsi | TIGR01308, rpmD_bact, 1 hit |
i Sequence
Sequence statusi: Complete.
Q9RSL0-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MKIKLVRSVI GRPGNQVKTV QALGLRKIGD SREVSDTPAV RGMVKTVKHL
LEVQE
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AE000513 Genomic DNA Translation: AAF11663.1 |
PIRi | E75314 |
RefSeqi | NP_295837.1, NC_001263.1 WP_010888745.1, NZ_CP015081.1 |
Genome annotation databases
EnsemblBacteriai | AAF11663; AAF11663; DR_2114 |
GeneIDi | 59163716 |
KEGGi | dra:DR_2114 |
PATRICi | fig|243230.17.peg.2337 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AE000513 Genomic DNA Translation: AAF11663.1 |
PIRi | E75314 |
RefSeqi | NP_295837.1, NC_001263.1 WP_010888745.1, NZ_CP015081.1 |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
1NKW | X-ray | 3.10 | X | 1-55 | [»] | |
1NWX | X-ray | 3.50 | X | 1-55 | [»] | |
1NWY | X-ray | 3.30 | X | 1-55 | [»] | |
1SM1 | X-ray | 3.42 | X | 1-55 | [»] | |
1XBP | X-ray | 3.50 | X | 1-55 | [»] | |
2ZJP | X-ray | 3.70 | W | 1-55 | [»] | |
2ZJQ | X-ray | 3.30 | W | 1-55 | [»] | |
2ZJR | X-ray | 2.91 | W | 1-55 | [»] | |
3CF5 | X-ray | 3.30 | W | 1-55 | [»] | |
3DLL | X-ray | 3.50 | W | 1-55 | [»] | |
3PIO | X-ray | 3.25 | W | 1-55 | [»] | |
3PIP | X-ray | 3.45 | W | 1-55 | [»] | |
4IO9 | X-ray | 3.20 | W | 1-55 | [»] | |
4IOA | X-ray | 3.20 | W | 1-55 | [»] | |
4IOC | X-ray | 3.60 | W | 1-55 | [»] | |
4U67 | X-ray | 3.65 | W | 1-55 | [»] | |
4V49 | X-ray | 8.70 | X | 1-55 | [»] | |
4V4A | X-ray | 9.50 | X | 1-55 | [»] | |
4V4G | X-ray | 11.50 | Z | 1-55 | [»] | |
4WFN | X-ray | 3.54 | W | 1-55 | [»] | |
5DM6 | X-ray | 2.90 | W | 1-55 | [»] | |
5DM7 | X-ray | 3.00 | W | 1-55 | [»] | |
5JVG | X-ray | 3.43 | W | 1-55 | [»] | |
5JVH | X-ray | 3.58 | W | 1-55 | [»] | |
7A0R | X-ray | 3.30 | W | 1-55 | [»] | |
7A0S | X-ray | 3.22 | W | 1-55 | [»] | |
7A18 | X-ray | 3.40 | W | 1-55 | [»] | |
AlphaFoldDBi | Q9RSL0 | |||||
SMRi | Q9RSL0 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Protein-protein interaction databases
IntActi | Q9RSL0, 1 interactor |
STRINGi | 243230.DR_2114 |
Genome annotation databases
EnsemblBacteriai | AAF11663; AAF11663; DR_2114 |
GeneIDi | 59163716 |
KEGGi | dra:DR_2114 |
PATRICi | fig|243230.17.peg.2337 |
Phylogenomic databases
eggNOGi | COG1841, Bacteria |
HOGENOMi | CLU_131047_2_1_0 |
InParanoidi | Q9RSL0 |
OMAi | GKQNQRD |
OrthoDBi | 2084745at2 |
Miscellaneous databases
EvolutionaryTracei | Q9RSL0 |
Family and domain databases
CDDi | cd01658, Ribosomal_L30, 1 hit |
Gene3Di | 3.30.1390.20, 1 hit |
HAMAPi | MF_01371_B, Ribosomal_L30_B, 1 hit |
InterProi | View protein in InterPro IPR036919, L30_ferredoxin-like_sf IPR005996, Ribosomal_L30_bac-type IPR016082, Ribosomal_L30_ferredoxin-like |
PANTHERi | PTHR15892, PTHR15892, 1 hit |
Pfami | View protein in Pfam PF00327, Ribosomal_L30, 1 hit |
PIRSFi | PIRSF002211, Ribosomal_L30_bac-type, 1 hit |
SUPFAMi | SSF55129, SSF55129, 1 hit |
TIGRFAMsi | TIGR01308, rpmD_bact, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | RL30_DEIRA | |
Accessioni | Q9RSL0Primary (citable) accession number: Q9RSL0 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | March 15, 2004 |
Last sequence update: | May 1, 2000 | |
Last modified: | May 25, 2022 | |
This is version 127 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
3D-structure, Direct protein sequencing, Reference proteomeDocuments
- Ribosomal proteins
Ribosomal proteins families and list of entries - PDB cross-references
Index of Protein Data Bank (PDB) cross-references - SIMILARITY comments
Index of protein domains and families