UniProtKB - Q9RSK0 (RL36_DEIRA)
Protein
50S ribosomal protein L36
Gene
rpmJ
Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Functioni
Binds the 23S rRNA.
Cofactori
Zn2+By similarityCuratedNote: Binds 1 zinc ion per subunit.By similarityCurated
Sites
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Metal bindingi | 11 | ZincBy similarityCurated | 1 | |
Metal bindingi | 14 | ZincBy similarityCurated | 1 | |
Metal bindingi | 27 | ZincBy similarityCurated | 1 | |
Metal bindingi | 32 | ZincBy similarityCurated | 1 |
GO - Molecular functioni
- metal ion binding Source: UniProtKB-KW
- rRNA binding Source: UniProtKB-KW
- structural constituent of ribosome Source: InterPro
GO - Biological processi
- translation Source: UniProtKB-UniRule
Keywordsi
Molecular function | Ribonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding |
Ligand | Metal-binding, Zinc |
Names & Taxonomyi
Protein namesi | Recommended name: 50S ribosomal protein L36 |
Gene namesi | Name:rpmJ Ordered Locus Names:DR_2124 |
Organismi | Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) |
Taxonomic identifieri | 243230 [NCBI] |
Taxonomic lineagei | Bacteria › Deinococcus-Thermus › Deinococci › Deinococcales › Deinococcaceae › Deinococcus › |
Proteomesi |
|
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000126180 | 1 – 37 | 50S ribosomal protein L36Add BLAST | 37 |
Interactioni
Subunit structurei
Part of the 50S ribosomal subunit.
6 PublicationsProtein-protein interaction databases
STRINGi | 243230.DR_2124 |
Structurei
Secondary structure
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details3D structure databases
SMRi | Q9RSK0 |
ModBasei | Search... |
PDBe-KBi | Search... |
Miscellaneous databases
EvolutionaryTracei | Q9RSK0 |
Family & Domainsi
Sequence similaritiesi
Belongs to the bacterial ribosomal protein bL36 family.Curated
Phylogenomic databases
eggNOGi | COG0257, Bacteria |
HOGENOMi | CLU_135723_6_2_0 |
InParanoidi | Q9RSK0 |
OrthoDBi | 2066169at2 |
Family and domain databases
DisProti | DP02016 |
HAMAPi | MF_00251, Ribosomal_L36, 1 hit |
InterProi | View protein in InterPro IPR000473, Ribosomal_L36 IPR035977, Ribosomal_L36_sp |
Pfami | View protein in Pfam PF00444, Ribosomal_L36, 1 hit |
SUPFAMi | SSF57840, SSF57840, 1 hit |
TIGRFAMsi | TIGR01022, rpmJ_bact, 1 hit |
PROSITEi | View protein in PROSITE PS00828, RIBOSOMAL_L36, 1 hit |
i Sequence
Sequence statusi: Complete.
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AE000513 Genomic DNA Translation: AAF11674.1 |
PIRi | E75312 |
RefSeqi | NP_295847.1, NC_001263.1 WP_010888755.1, NZ_CP015081.1 |
Genome annotation databases
EnsemblBacteriai | AAF11674; AAF11674; DR_2124 |
KEGGi | dra:DR_2124 |
PATRICi | fig|243230.17.peg.2347 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AE000513 Genomic DNA Translation: AAF11674.1 |
PIRi | E75312 |
RefSeqi | NP_295847.1, NC_001263.1 WP_010888755.1, NZ_CP015081.1 |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
1NKW | X-ray | 3.10 | 4 | 1-36 | [»] | |
1NWX | X-ray | 3.50 | 4 | 1-37 | [»] | |
1NWY | X-ray | 3.30 | 4 | 1-37 | [»] | |
1SM1 | X-ray | 3.42 | 4 | 1-37 | [»] | |
1XBP | X-ray | 3.50 | 4 | 1-37 | [»] | |
2ZJP | X-ray | 3.70 | 4 | 1-37 | [»] | |
2ZJQ | X-ray | 3.30 | 4 | 1-37 | [»] | |
2ZJR | X-ray | 2.91 | 4 | 1-37 | [»] | |
3CF5 | X-ray | 3.30 | 4 | 1-37 | [»] | |
3DLL | X-ray | 3.50 | 4 | 1-37 | [»] | |
3PIO | X-ray | 3.25 | 4 | 1-37 | [»] | |
3PIP | X-ray | 3.45 | 4 | 1-37 | [»] | |
4IO9 | X-ray | 3.20 | 4 | 1-37 | [»] | |
4IOA | X-ray | 3.20 | 4 | 1-37 | [»] | |
4IOC | X-ray | 3.60 | 4 | 1-37 | [»] | |
4V49 | X-ray | 8.70 | 4 | 2-36 | [»] | |
4V4A | X-ray | 9.50 | 4 | 2-36 | [»] | |
4V4G | X-ray | 11.50 | 6 | 2-36 | [»] | |
4V4R | X-ray | 5.90 | B9 | 1-36 | [»] | |
4V4S | X-ray | 6.76 | B9 | 1-36 | [»] | |
4V4T | X-ray | 6.46 | 9 | 1-36 | [»] | |
SMRi | Q9RSK0 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Protein-protein interaction databases
STRINGi | 243230.DR_2124 |
Genome annotation databases
EnsemblBacteriai | AAF11674; AAF11674; DR_2124 |
KEGGi | dra:DR_2124 |
PATRICi | fig|243230.17.peg.2347 |
Phylogenomic databases
eggNOGi | COG0257, Bacteria |
HOGENOMi | CLU_135723_6_2_0 |
InParanoidi | Q9RSK0 |
OrthoDBi | 2066169at2 |
Miscellaneous databases
EvolutionaryTracei | Q9RSK0 |
Family and domain databases
DisProti | DP02016 |
HAMAPi | MF_00251, Ribosomal_L36, 1 hit |
InterProi | View protein in InterPro IPR000473, Ribosomal_L36 IPR035977, Ribosomal_L36_sp |
Pfami | View protein in Pfam PF00444, Ribosomal_L36, 1 hit |
SUPFAMi | SSF57840, SSF57840, 1 hit |
TIGRFAMsi | TIGR01022, rpmJ_bact, 1 hit |
PROSITEi | View protein in PROSITE PS00828, RIBOSOMAL_L36, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | RL36_DEIRA | |
Accessioni | Q9RSK0Primary (citable) accession number: Q9RSK0 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | December 1, 2000 |
Last sequence update: | May 1, 2000 | |
Last modified: | December 2, 2020 | |
This is version 123 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
3D-structure, Direct protein sequencing, Reference proteomeDocuments
- PDB cross-references
Index of Protein Data Bank (PDB) cross-references - SIMILARITY comments
Index of protein domains and families - Ribosomal proteins
Ribosomal proteins families and list of entries