UniProtKB - Q9R210 (TFEB_MOUSE)

BLAST

>sp|Q9R210|TFEB_MOUSE Transcription factor EB OS=Mus musculus OX=10090 GN=Tfeb PE=1 SV=2
MASRIGLRMQLMREQAQQEEQRERMQQQAVMHYMQQQQQQQQQLGGPPTPAINTPVHFQS
PPPVPGEVLKVQSYLENPTSYHLQQSQHQKVREYLSETYGNKFAAHVSPAQGSPKPAPAA
SPGVRAGHVLSTSAGNSAPNSPMAMLHISSNPEKEFDDVIDNIMRLDSVLGYINPEMQMP
NTLPLSSSHLNVYSGDPQVTASMVGVTSSSCPADLTQKRELTDAESRALAKERQKKDNHN
LIERRRRFNINDRIKELGMLIPKANDLDVRWNKGTILKASVDYIRRMQKDLQKSRELENH
SRRLEMTNKQLWLRIQELEMQARVHGLPTTSPSGVNMAELAQQVVKQELPSEDGPGEALM
LGPEVPEPEQMPALPPQAPLPSAAQPQSPFHHLDFSHGLSFGGGGDEGPTGYPDTLGTEH
GSPFPNLSKKDLDLMLLDDSLLPLASDPLFSTMSPEASKASSRRSSFSMEEGDVL

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History
Entry version 134 (07 Nov 2018)
Sequence version 2 (29 Aug 2001)
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Protein

Transcription factor EB

Gene

Tfeb

Organism

Mus musculus (Mouse)

Status

Reviewed-Annotation score: -Experimental evidence at protein levelⁱ

Functionⁱ

Transcription factor that specifically recognizes and binds E-box sequences (5'-CANNTG-3'). Efficient DNA-binding requires dimerization with itself or with another MiT/TFE family member such as TFE3 or MITF. In association with TFE3, activates the expression of CD40L in T-cells, thereby playing a role in T-cell-dependent antibody responses in activated CD4⁺ T-cells and thymus-dependent humoral immunity. Specifically recognizes and binds the CLEAR-box sequence (5'-GTCACGTGAC-3') present in the regulatory region of many lysosomal genes, leading to activate their expression. It thereby plays a central role in expression of lysosomal genes. Acts as a positive regulator of autophagy by promoting expression of genes involved in autophagy. Specifically recognizes the gamma-E3 box, a subset of E-boxes, present in the heavy-chain immunoglobulin enhancer. Plays a role in the signal transduction processes required for normal vascularization of the placenta.2 Publications

GO - Molecular functionⁱ

DNA binding
Source: MGI
Inferred from direct assayⁱ
- 15994295
DNA-binding transcription factor activity
Source: UniProtKB
Inferred from direct assayⁱ
- 16936731
protein heterodimerization activity
Source: UniProtKB
Inferred from physical interactionⁱ
- 16936731
proximal promoter DNA-binding transcription activator activity, RNA polymerase II-specific
Source: NTNU_SB
Inferred from direct assayⁱ
- 16936731
RNA polymerase II proximal promoter sequence-specific DNA binding
Source: NTNU_SB
Inferred from direct assayⁱ
- 16936731
transcription regulatory region DNA binding
Source: UniProtKB
Inferred from direct assayⁱ
- 16936731

View the complete GO annotation on QuickGO ...

GO - Biological processⁱ

adaptive immune response Source: UniProtKB-KW
autophagy Source: UniProtKB-KW
defense response to Gram-negative bacterium
Source: UniProtKB
Inferred from mutant phenotypeⁱ
- 27184844
embryonic placenta development
Source: UniProtKB
Inferred from mutant phenotypeⁱ
- 9806910
humoral immune response
Source: UniProtKB
Inferred from mutant phenotypeⁱ
- 16936731
lysosome organization Source: UniProtKB
positive regulation of autophagy Source: UniProtKB
positive regulation of transcription, DNA-templated
Source: MGI
Inferred from direct assayⁱ
- 15994295
positive regulation of transcription by RNA polymerase II
Source: UniProtKB
Inferred from direct assayⁱ
- 16936731
regulation of defense response to bacterium, incompatible interaction
Source: UniProtKB
Inferred from mutant phenotypeⁱ
- 27184844

View the complete GO annotation on QuickGO ...

Keywordsⁱ

Molecular function	Activator, DNA-binding
Biological process	Adaptive immunity, Autophagy, Immunity, Transcription, Transcription regulation

Names & Taxonomyⁱ

Protein namesⁱ	Recommended name: Transcription factor EB
Gene namesⁱ	Name:Tfeb Synonyms:Tcfeb
Organismⁱ	Mus musculus (Mouse)
Taxonomic identifierⁱ	10090 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Dipnotetrapodomorpha › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Boreoeutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Mus › Mus
Proteomesⁱ	UP000000589 Componentⁱ: Chromosome 17

Organism-specific databases

MGIⁱ	MGI:103270 Tfeb

Keywords - Cellular componentⁱ

Cytoplasm, Nucleus

Pathology & Biotechⁱ

Disruption phenotypeⁱ

Death between 9.5 and 10.5 days in embryonic development. Embryos display severe defects in placental vascularization. The embryonic vasculature forms normally but few vessels are seen entering the placenta and those that do enter fail to thrive and branch normally.1 Publication

PTM / Processingⁱ

Molecule processing

Feature key	Position(s)	DescriptionActions	Graphical view	Length
ChainⁱPRO_0000127474	1 – 475	Transcription factor EBAdd BLAST		475

Amino acid modifications

Feature key	Position(s)	DescriptionActions	Length
Modified residueⁱ	108	PhosphoserineCombined sources	1
Modified residueⁱ	113	PhosphoserineCombined sources	1
Modified residueⁱ	121	PhosphoserineCombined sources	1
Modified residueⁱ	137	PhosphoserineCombined sources	1
Modified residueⁱ	141	PhosphoserineCombined sources	1
Modified residueⁱ	182	PhosphothreonineBy similarity	1
Modified residueⁱ	422	PhosphoserineBy similarity	1
Modified residueⁱ	440	PhosphoserineBy similarity	1
Modified residueⁱ	465	PhosphoserineCombined sources	1
Modified residueⁱ	466	PhosphoserineCombined sources	1
Modified residueⁱ	468	PhosphoserineCombined sources	1

Post-translational modificationⁱ

Sumoylated; does not affect dimerization with MITF.By similarity

Keywords - PTMⁱ

Phosphoprotein, Ubl conjugation

Proteomic databases

EPDⁱ	Q9R210
MaxQB - The MaxQuant DataBase More...MaxQBⁱ	Q9R210
PaxDbⁱ	Q9R210
PRIDEⁱ	Q9R210

PTM databases

iPTMnetⁱ	Q9R210
PhosphoSitePlusⁱ	Q9R210

Expressionⁱ

Tissue specificityⁱ

Widely expressed.1 Publication

Developmental stageⁱ

Expressed at low levels in the embryo but at high levels in the labyrinthine trophoblast cells of the placenta.1 Publication

Gene expression databases

Bgeeⁱ	ENSMUSG00000023990 Expressed in 218 organ(s), highest expression level in head
CleanExⁱ	MM_TCFEB
ExpressionAtlasⁱ	Q9R210 baseline and differential
Genevisibleⁱ	Q9R210 MM

Interactionⁱ

Subunit structureⁱ

Homodimer and heterodimer; with TFE3 or MITF.By similarity

GO - Molecular functionⁱ

protein heterodimerization activity
Source: UniProtKB
Inferred from physical interactionⁱ
- 16936731

View the complete GO annotation on QuickGO ...

Protein-protein interaction databases

BioGridⁱ	204016, 1 interactor
IntActⁱ	Q9R210, 2 interactors
Molecular INTeraction database More...MINTⁱ	Q9R210
STRINGⁱ	10090.ENSMUSP00000024786

Structureⁱ

3D structure databases

ProteinModelPortalⁱ	Q9R210
SMRⁱ	Q9R210
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Family & Domainsⁱ

Domains and Repeats

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Domainⁱ	234 – 287	bHLHPROSITE-ProRule annotationAdd BLAST		54

Region

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Regionⁱ	155 – 164	Strong transcription activation domainSequence analysis		10
Regionⁱ	297 – 318	Leucine-zipperAdd BLAST		22

Compositional bias

Feature key	Position(s)	DescriptionActions	Length
Compositional biasⁱ	10 – 43	Gln-richAdd BLAST	34
Compositional biasⁱ	35 – 43	Poly-Gln	9
Compositional biasⁱ	363 – 413	Pro-richAdd BLAST	51

Domainⁱ

The leucin zipper region is essential for homo- or heterodimerization and high-affinity DNA binding. DNA binding is mediated by the basic region (By similarity).By similarity

Sequence similaritiesⁱ

Belongs to the MiT/TFE family.Curated

Phylogenomic databases

eggNOGⁱ	KOG1318 Eukaryota ENOG4110SME LUCA
Ensembl GeneTree More...GeneTreeⁱ	ENSGT00390000004402
HOGENOMⁱ	HOG000231368
HOVERGENⁱ	HBG006768
InParanoidⁱ	Q9R210
KEGG Orthology (KO) More...KOⁱ	K15590
PhylomeDBⁱ	Q9R210

Family and domain databases

Conserved Domains Database More...CDDⁱ	cd00083 HLH, 1 hit
Gene3Dⁱ	4.10.280.10, 1 hit
InterProⁱ	View protein in InterPro IPR011598 bHLH_dom IPR024097 bHLH_ZIP_TF IPR036638 HLH_DNA-bd_sf IPR021802 MiT/TFE_C IPR031867 MiT/TFE_N IPR024098 TFEB
PANTHERⁱ	PTHR12565 PTHR12565, 1 hit PTHR12565:SF133 PTHR12565:SF133, 1 hit
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF11851 DUF3371, 1 hit PF00010 HLH, 1 hit PF15951 MITF_TFEB_C_3_N, 1 hit
SMARTⁱ	View protein in SMART SM00353 HLH, 1 hit
SUPFAMⁱ	SSF47459 SSF47459, 1 hit
PROSITEⁱ	View protein in PROSITE PS50888 BHLH, 1 hit

Sequence (1+)ⁱ

Sequence statusⁱ: Complete.

This entry has 1 described isoform and 9 potential isoforms that are computationally mapped.Show all Align All

Q9R210-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MASRIGLRMQ LMREQAQQEE QRERMQQQAV MHYMQQQQQQ QQQLGGPPTP 
        60         70         80         90        100
AINTPVHFQS PPPVPGEVLK VQSYLENPTS YHLQQSQHQK VREYLSETYG 
       110        120        130        140        150
NKFAAHVSPA QGSPKPAPAA SPGVRAGHVL STSAGNSAPN SPMAMLHISS 
       160        170        180        190        200
NPEKEFDDVI DNIMRLDSVL GYINPEMQMP NTLPLSSSHL NVYSGDPQVT 
       210        220        230        240        250
ASMVGVTSSS CPADLTQKRE LTDAESRALA KERQKKDNHN LIERRRRFNI 
       260        270        280        290        300
NDRIKELGML IPKANDLDVR WNKGTILKAS VDYIRRMQKD LQKSRELENH 
       310        320        330        340        350
SRRLEMTNKQ LWLRIQELEM QARVHGLPTT SPSGVNMAEL AQQVVKQELP 
       360        370        380        390        400
SEDGPGEALM LGPEVPEPEQ MPALPPQAPL PSAAQPQSPF HHLDFSHGLS 
       410        420        430        440        450
FGGGGDEGPT GYPDTLGTEH GSPFPNLSKK DLDLMLLDDS LLPLASDPLF 
       460        470 
STMSPEASKA SSRRSSFSME EGDVL

Length:475

Mass (Da):52,614

Last modified:August 29, 2001 - v2

Checksum:ⁱ4249C6F501968326

Computationally mapped potential isoform sequencesⁱ

There are 9 potential isoforms mapped to this entry.BLAST Align Show all Add to basket

Entry	Entry name	Protein names	Gene names	Length	Annotation

D3Z1X9	D3Z1X9_MOUSE	Transcription factor EB Transcription factor EB	Tfeb	105	Annotation score:
Q3UKG7	Q3UKG7_MOUSE	Transcription factor EB Transcription factor EB (Transcription factor EB, isoform CRA_b)	Tfeb Tcfeb, mCG_15558	534	Annotation score:
D3Z6Q7	D3Z6Q7_MOUSE	Transcription factor EB Transcription factor EB	Tfeb	267	Annotation score:
D3YZM7	D3YZM7_MOUSE	Transcription factor EB Transcription factor EB	Tfeb	103	Annotation score:
D3Z782	D3Z782_MOUSE	Transcription factor EB Transcription factor EB	Tfeb	76	Annotation score:
E9PXZ1	E9PXZ1_MOUSE	Transcription factor EB Transcription factor EB	Tfeb	78	Annotation score:
E9PWJ9	E9PWJ9_MOUSE	Transcription factor EB Transcription factor EB	Tfeb	77	Annotation score:
F6W7D6	F6W7D6_MOUSE	Transcription factor EB Transcription factor EB	Tfeb	334	Annotation score:
D3Z219	D3Z219_MOUSE	Transcription factor EB Transcription factor EB	Tfeb	32	Annotation score:

Sequence cautionⁱ

The sequence AAD20979 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AF079095 mRNA Translation: AAD20979.1 Different initiation.
The Consensus CDS (CCDS) project More...CCDSⁱ	CCDS50133.1
NCBI Reference Sequences More...RefSeqⁱ	NP_001155194.1, NM_001161722.1 NP_001155195.1, NM_001161723.1 NP_035679.3, NM_011549.3 XP_006524066.2, XM_006524003.3 XP_006524069.1, XM_006524006.3 XP_006524070.1, XM_006524007.3
UniGeneⁱ	Mm.2305

Genome annotation databases

Ensemblⁱ	ENSMUST00000086932; ENSMUSP00000084151; ENSMUSG00000023990 ENSMUST00000113288; ENSMUSP00000108913; ENSMUSG00000023990
GeneIDⁱ	21425
KEGGⁱ	mmu:21425
UCSC genome browser More...UCSCⁱ	uc008cwc.2 mouse

Similar proteinsⁱ

100% Identity
90% Identity
50% Identity

Protein	Similar proteins		Species	Score	Length	Source
Q9R210	Transcription factor EB		MOUSE		534	UniRef100_Q9R210
Transcription factor EB		MOUSE		267
Transcription factor TFEB (Fragment)		MOUSE		150

Protein	Similar proteins		Species	Score	Length	Source
Q9R210	Transcription factor EB		MOUSE		534	UniRef90_Q9R210
Transcription factor EB		RAT		535
transcription factor EB isoform X1		MESAU		531
Transcription factor EB		CRIGR		476
UPI00042AB031		PERMB		537
+17

Protein	Similar proteins		Species	Score	Length	Source
Q9R210	Transcription factor EB		HUMAN		476	UniRef50_Q9R210
Transcription factor EB		MOUSE		534
Transcription factor EB		RAT		535
transcription factor EB isoform X1		MESAU		531
Transcription factor EB		CRIGR		476
+323

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AF079095 mRNA Translation: AAD20979.1 Different initiation.
CCDSⁱ	CCDS50133.1
RefSeqⁱ	NP_001155194.1, NM_001161722.1 NP_001155195.1, NM_001161723.1 NP_035679.3, NM_011549.3 XP_006524066.2, XM_006524003.3 XP_006524069.1, XM_006524006.3 XP_006524070.1, XM_006524007.3
UniGeneⁱ	Mm.2305

3D structure databases

ProteinModelPortalⁱ	Q9R210
SMRⁱ	Q9R210
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protein-protein interaction databases

BioGridⁱ	204016, 1 interactor
IntActⁱ	Q9R210, 2 interactors
MINTⁱ	Q9R210
STRINGⁱ	10090.ENSMUSP00000024786

PTM databases

iPTMnetⁱ	Q9R210
PhosphoSitePlusⁱ	Q9R210

Proteomic databases

EPDⁱ	Q9R210
MaxQBⁱ	Q9R210
PaxDbⁱ	Q9R210
PRIDEⁱ	Q9R210

Protocols and materials databases

Structural Biology Knowledgebase	Search...

Structural Biology Knowledgebase

Search...

Genome annotation databases

Ensemblⁱ	ENSMUST00000086932; ENSMUSP00000084151; ENSMUSG00000023990 ENSMUST00000113288; ENSMUSP00000108913; ENSMUSG00000023990
GeneIDⁱ	21425
KEGGⁱ	mmu:21425
UCSCⁱ	uc008cwc.2 mouse

Organism-specific databases

CTDⁱ	7942
MGIⁱ	MGI:103270 Tfeb

Phylogenomic databases

eggNOGⁱ	KOG1318 Eukaryota ENOG4110SME LUCA
GeneTreeⁱ	ENSGT00390000004402
HOGENOMⁱ	HOG000231368
HOVERGENⁱ	HBG006768
InParanoidⁱ	Q9R210
KOⁱ	K15590
PhylomeDBⁱ	Q9R210

Miscellaneous databases

ChiTaRSⁱ	Tfeb mouse
Protein Ontology More...PROⁱ	PR:Q9R210
SOURCEⁱ	Search...

Gene expression databases

Bgeeⁱ	ENSMUSG00000023990 Expressed in 218 organ(s), highest expression level in head
CleanExⁱ	MM_TCFEB
ExpressionAtlasⁱ	Q9R210 baseline and differential
Genevisibleⁱ	Q9R210 MM

Family and domain databases

CDDⁱ	cd00083 HLH, 1 hit
Gene3Dⁱ	4.10.280.10, 1 hit
InterProⁱ	View protein in InterPro IPR011598 bHLH_dom IPR024097 bHLH_ZIP_TF IPR036638 HLH_DNA-bd_sf IPR021802 MiT/TFE_C IPR031867 MiT/TFE_N IPR024098 TFEB
PANTHERⁱ	PTHR12565 PTHR12565, 1 hit PTHR12565:SF133 PTHR12565:SF133, 1 hit
Pfamⁱ	View protein in Pfam PF11851 DUF3371, 1 hit PF00010 HLH, 1 hit PF15951 MITF_TFEB_C_3_N, 1 hit
SMARTⁱ	View protein in SMART SM00353 HLH, 1 hit
SUPFAMⁱ	SSF47459 SSF47459, 1 hit
PROSITEⁱ	View protein in PROSITE PS50888 BHLH, 1 hit
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ	TFEB_MOUSE
Accessionⁱ	Q9R210Primary (citable) accession number: Q9R210
Entry historyⁱ	Integrated into UniProtKB/Swiss-Prot:	August 29, 2001
	Last sequence update:	August 29, 2001
	Last modified:	November 7, 2018
	This is version 134 of the entry and version 2 of the sequence. See complete history.
Entry statusⁱ	Reviewed (UniProtKB/Swiss-Prot)
Annotation program	Chordata Protein Annotation Program

Miscellaneousⁱ

Keywords - Technical termⁱ

Complete proteome, Reference proteome

Documents

SIMILARITY comments
Index of protein domains and families
MGD cross-references
Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot

UniProtKB

UniParc

Help

UniRef

Proteomes

Annotation systems

Supporting data

UniProtKB - Q9R210 (TFEB_MOUSE)

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Transcription factor EB

Tfeb

Select a section on the left to see content.

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

Organism-specific databases

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Nucleus

Other locations

Nucleus

Other locations

Keywords - Cellular componenti

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Amino acid modifications

Keywords - PTMi

Proteomic databases

PTM databases

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

GO - Molecular functioni

Protein-protein interaction databases

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Region

Compositional bias

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Phylogenomic databases

Family and domain databases

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

Sequence databases

Genome annotation databases

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protein-protein interaction databases

PTM databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Miscellaneous databases

Gene expression databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Documents

UniProt is an ELIXIR core data resource

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Functionⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

Keywords - Cellular componentⁱ

Pathology & Biotechⁱ

PTM / Processingⁱ

Keywords - PTMⁱ

Expressionⁱ

Interactionⁱ

GO - Molecular functionⁱ

Structureⁱ

Family & Domainsⁱ

Sequence similaritiesⁱ

Sequence cautionⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ