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UniProtKB - Q9PZT0 (CAPSD_PAVHV)

Entry version 71 (07 Oct 2020)
Sequence version 1 (01 May 2000)
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Protein

Minor capsid protein VP1

Gene

vp

Organism
Human parvovirus B19 (strain HV) (HPV B19)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Capsid protein self-assembles to form an icosahedral capsid with a T=1 symmetry, about 20 nm in diameter, and consisting of 60 copies of two size variants of the capsid proteins, VP1 and VP2, which differ by the presence of an N-terminal extension in the minor protein VP1 (PubMed:15289612). The capsid encapsulates the genomic ssDNA (Probable). Binds to erythroid progenitor cells expressing high levels of P antigen and uses host ITGA5-ITGB1 and XRCC5/Ku80 autoantigen as coreceptors on the cell surface to provide virion attachment to target cell (PubMed:12907437, PubMed:8211117, PubMed:16076874). This attachment induces virion internalization predominantly through clathrin-dependent endocytosis (PubMed:22718826). Binding to the host receptors also induces capsid rearrangements leading to surface exposure of VP1 N-terminus, specifically its phospholipase A2-like region (PubMed:17020940). The additional N-terminal region of isoform Minor capsid protein VP1, called VP1u, may serve as a lipolytic enzyme to breach the endosomal membrane during entry into host cell and might contribute to virus transport to the nucleus (PubMed:11702787).Curated7 Publications

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHydrolase
Biological processClathrin-mediated endocytosis of virus by host, Cytoplasmic inwards viral transport, Host-virus interaction, Lipid degradation, Lipid metabolism, Microtubular inwards viral transport, Viral attachment to host cell, Viral penetration into host cytoplasm, Viral penetration into host nucleus, Viral penetration via permeabilization of host membrane, Virus endocytosis by host, Virus entry into host cell
LigandMagnesium, Metal-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Minor capsid protein VP1 (EC:3.1.1.42 Publications)
Alternative name(s):
Coat protein VP1
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:vp
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHuman parvovirus B19 (strain HV) (HPV B19)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri648237 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiViruses › Monodnaviria › Shotokuvirae › Cossaviricota › Quintoviricetes › Piccovirales › Parvoviridae › Parvovirinae › Erythroparvovirus ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section only exists in viral entries and indicates the host(s) either as a specific organism or taxonomic group of organisms that are susceptible to be infected by a virus.<p><a href='/help/virus_host' target='_top'>More...</a></p>Virus hostiHomo sapiens (Human) [TaxID: 9606]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006624 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Genome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

GO - Cellular componenti

Complete GO annotation on QuickGO ...

Keywords - Cellular componenti

Capsid protein, Host cytoplasm, Host nucleus, T=1 icosahedral capsid protein, Virion

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/manual/pathology%5Fand%5Fbiotech%5Fsection">'Pathology and Biotech'</a> section describes the effect of the experimental mutation of one or more amino acid(s) on the biological properties of the protein.<p><a href='/help/mutagen' target='_top'>More...</a></p>Mutagenesisi15F → C: 50% loss of virus internalization into the host cell. 1 Publication1
Mutagenesisi15F → W: 70% loss of virus internalization into the host cell. 1 Publication1
Mutagenesisi16A → S: Almost complete loss of virus internalization into the host cell. 1 Publication1
Mutagenesisi19V → A: 70% loss of virus internalization into the host cell. 1 Publication1
Mutagenesisi19V → S: 70% loss of virus internalization into the host cell. 1 Publication1
Mutagenesisi20Y → C: 70% loss of virus internalization into the host cell. 1 Publication1
Mutagenesisi20Y → W: Almost complete loss of virus internalization into the host cell. 1 Publication1
Mutagenesisi21Q → A: 80% loss of virus internalization into the host cell. 1 Publication1
Mutagenesisi21Q → P: 50% loss of virus internalization into the host cell. 1 Publication1
Mutagenesisi22Q → A: 30% loss of virus internalization into the host cell. 1 Publication1
Mutagenesisi22Q → P: 10% loss of virus internalization into the host cell. 1 Publication1
Mutagenesisi23F → S: 60% loss of virus internalization into the host cell. 1 Publication1
Mutagenesisi26F → S: 70% loss of virus internalization into the host cell. 1 Publication1
Mutagenesisi27Y → C: 30% loss of virus internalization into the host cell. 1 Publication1
Mutagenesisi27Y → W: 70% loss of virus internalization into the host cell. 1 Publication1
Mutagenesisi29K → A: Almost complete loss of virus internalization into the host cell. 1 Publication1
Mutagenesisi130Y → A: Very low levels of phospholipase A2-like activity. 1 Publication1
Mutagenesisi132G → A: Complete loss of phospholipase A2-like activity. 1 Publication1
Mutagenesisi133P → R: No effect on phospholipase A2-like activity. 1 Publication1
Mutagenesisi153H → A: Very low levels of phospholipase A2-like activity. 1 Publication1
Mutagenesisi154D → A: Complete loss of phospholipase A2-like activity. 1 Publication1
Mutagenesisi157Y → F: Very low levels of phospholipase A2-like activity. 1 Publication1
Mutagenesisi162K → R: Very low levels of phospholipase A2-like activity. 1 Publication1
Mutagenesisi168Y → F: Complete loss of phospholipase A2-like activity. 1 Publication1
Mutagenesisi175D → A: Very low levels of phospholipase A2-like activity. 1 Publication1
Mutagenesisi176E → K: 80% loss of infectivity. 1 Publication1
Mutagenesisi195D → A: 10% increased phospholipase A2-like activity. 1 Publication1
Mutagenesisi207A → Y: No effect on phospholipase A2-like activity. 1 Publication1
Mutagenesisi720K → A: Host nucleocytoplasmic localization. 1 Publication1
Mutagenesisi723 – 725PRK → AAA: Host cytoplasmic localization. 1 Publication3
Mutagenesisi723P → A: Host nucleocytoplasmic localization. 1 Publication1
Mutagenesisi724R → A: Host nucleocytoplasmic localization. 1 Publication1
Mutagenesisi725K → A: Host nucleocytoplasmic localization. 1 Publication1
Mutagenesisi729R → A: Host nucleocytoplasmic localization. 1 Publication1

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004287141 – 781Minor capsid protein VP1Add BLAST781

Proteomic databases

PRoteomics IDEntifications database

More...PRIDEi		Q9PZT0

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Heteromultimer of isoform Minor capsid protein VP1, isoform Minor capsid protein VP2 and isoform Major capsid protein VP3 (PubMed:15289612).

1 Publication

Heteromultimer of isoform Minor capsid protein VP1, isoform Minor capsid protein VP2 and isoform Major capsid protein VP3 (PubMed:15289612). 20 fold more abundant than the minor capsid protein VP1 (PubMed:15289612).

1 Publication

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		Q9PZT0

Database of comparative protein structure models

More...ModBasei		Search...

Protein Data Bank in Europe - Knowledge Base

More...PDBe-KBi		Search...

Miscellaneous databases

Relative evolutionary importance of amino acids within a protein sequence

More...EvolutionaryTracei		Q9PZT0

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni5 – 80Binding to the host cell receptor and internalization1 PublicationAdd BLAST76
Regioni123 – 181Phospholipase A2-like2 PublicationsAdd BLAST59

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a short (usually not more than 20 amino acids) conserved sequence motif of biological significance.<p><a href='/help/motif' target='_top'>More...</a></p>Motifi720 – 730Nuclear localization signal1 Publication1 PublicationAdd BLAST11

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi95 – 99Poly-Ser5
Compositional biasi239 – 244Poly-Gly6

<p>This subsection of the 'Family and domains' section provides general information on the biological role of a domain. The term 'domain' is intended here in its wide acceptation, it may be a structural domain, a transmembrane region or a functional domain. Several domains are described in this subsection.<p><a href='/help/domain_cc' target='_top'>More...</a></p>Domaini

The N-terminus of Isoform Minor capsid protein VP1, VP1u, contains a phospholipase A2-like region (PubMed:17020940). VP1u is necessary and sufficient for host cell binding and internalization (PubMed:26927158).2 Publications
A nuclear localization signal is present in the C-terminus and can be recognized by cellular nuclear import molecules (PubMed:15289612). After assembly, it is hidden because it is on the inner capsid surface (PubMed:15289612).1 Publication1 Publication

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the parvoviridae capsid protein family.Curated

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.170.30.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR016184, Capsid/spike_ssDNA_virus
IPR001403, Parvovirus_coat
IPR013607, Parvovirus_coat_VP1_N
IPR036952, VP1/VP2

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00740, Parvo_coat, 1 hit
PF08398, Parvo_coat_N, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF88645, SSF88645, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (2)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 2 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform. This section is only present in reviewed entries, i.e. in UniProtKB/Swiss-Prot.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket
Isoform Minor capsid protein VP1 (identifier: Q9PZT0-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MSKESGKWWE SDDKFAKAVY QQFVEFYEKV TGTDLELIQI LKDHYNISLD 
        60         70         80         90        100
NPLENPSSLF DLVARIKNNL KNSPDLYSHH FQSHGQLSDH PHALSSSSSH 
       110        120        130        140        150
AEPRGENAVL SSEDLHKPGQ VSVQLPGTNY VGPGNELQAG PPQSAVDSAA 
       160        170        180        190        200
RIHDFRYSQL AKLGINPYTH WTVADEELLK NIKNETGFQA QVVKDYFTLK 
       210        220        230        240        250
GAAAPVAHFQ GSLPEVPAYN ASEKYPSMTS VNSAEASTGA GGGGSNPVKS 
       260        270        280        290        300
MWSEGATFSA NSVTCTFSRQ FLIPYDPEHH YKVFSPAASS CHNASGKEAK 
       310        320        330        340        350
VCTISPIMGY STPWRYLDFN ALNLFFSPLE FQHLIENYGS IAPDALTVTI 
       360        370        380        390        400
SEIAVKDVTD KTGGGVQVTD STTGRLSMLV DHEYKYPYVL GQGQDTLAPE 
       410        420        430        440        450
LPIWVYFPPQ YAYLTVGDVN TQGISGDSKK LASEESAFYV LEHSSFQLLG 
       460        470        480        490        500
TGGTATMSYK FPPVPPENLE GCSQHFYEMY NPLYGSRLGV PDTLGGDPKF 
       510        520        530        540        550
RSLTHEDHAI QPQNFMPGPL VNSVSTKEGD SSNTGAGKAL TGLSTGTSQN 
       560        570        580        590        600
TRISLRPGPV SQPYHHWDTD KYVPGINAIS HGQTTYGNAE DKEYQQGVGR 
       610        620        630        640        650
FPNEKEQLKQ LQGLNMHTYF PNKGTQQYTD QIERPLMVGS VWNRRALHYE 
       660        670        680        690        700
SQLWSKIPNL DDSFKTQFAA LGGWGLHQPP PQIFLKILPQ SGPIGGIKSM 
       710        720        730        740        750
GITTLVQYAV GIMTVTMTFK LGPRKATGRW NPQPGVYPPH AAGHLPYVLY 
       760        770        780 
DPTATDAKQH HRHGYEKPEE LWTAKSRVHP L
Note: Minor splicing isoform.Curated
Length:781
Mass (Da):86,020
Last modified:May 1, 2000 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i225DF1EDC68B841F
GO
Isoform Major capsid protein VP2 (identifier: Q9PZT0-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-227: Missing.

Note: Major splicing isoform produced by deletion of the initiating AUG for VP1 and downstream translation of VP2.Curated
Show »
Length:554
Mass (Da):60,833
Checksum:i7901FEBD65A697E6
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti377S → C in AAB47453 (PubMed:8922470).Curated1
Sequence conflicti574P → T in AAB47453 (PubMed:8922470).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0542471 – 227Missing in isoform Major capsid protein VP2. CuratedAdd BLAST227

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AF162273 Genomic DNA Translation: AAD46614.1
AF162273 Genomic DNA Translation: AAD46615.1
U53595 Genomic DNA Translation: AAB47453.1

NCBI Reference Sequences

More...RefSeqi		YP_004928148.1, NC_000883.2

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...GeneIDi		11293627

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		vg:11293627

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF162273 Genomic DNA Translation: AAD46614.1
AF162273 Genomic DNA Translation: AAD46615.1
U53595 Genomic DNA Translation: AAB47453.1
RefSeqiYP_004928148.1, NC_000883.2

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...PDBei

Protein Data Bank RCSB

More...RCSB PDBi

Protein Data Bank Japan

More...PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1S58X-ray3.50A1-554[»]
SMRiQ9PZT0
ModBaseiSearch...
PDBe-KBiSearch...

Proteomic databases

PRIDEiQ9PZT0

Protocols and materials databases

ABCD curated depository of sequenced antibodies

More...ABCDi		Q9PZT0, 2 sequenced antibodies

Genome annotation databases

GeneIDi11293627
KEGGivg:11293627

Miscellaneous databases

EvolutionaryTraceiQ9PZT0

Family and domain databases

Gene3Di2.170.30.10, 1 hit
InterProiView protein in InterPro
IPR016184, Capsid/spike_ssDNA_virus
IPR001403, Parvovirus_coat
IPR013607, Parvovirus_coat_VP1_N
IPR036952, VP1/VP2
PfamiView protein in Pfam
PF00740, Parvo_coat, 1 hit
PF08398, Parvo_coat_N, 1 hit
SUPFAMiSSF88645, SSF88645, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiCAPSD_PAVHV
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9PZT0
Secondary accession number(s): Q90201, Q9PZS9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 16, 2014
Last sequence update: May 1, 2000
Last modified: October 7, 2020
This is version 71 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
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