USE1

Functionⁱ

SNARE that may be involved in targeting and fusion of Golgi-derived retrograde transport vesicles with the ER.1 Publication

GO - Biological processⁱ

lysosomal transport
Source: HGNC
Inferred from sequence or structural similarityⁱ
- 16354670
protein catabolic process
Source: HGNC
Inferred from sequence or structural similarityⁱ
- 16354670
protein transport Source: UniProtKB-KW
retrograde vesicle-mediated transport, Golgi to ER Source: Reactome
secretion by cell
Source: HGNC
Inferred from sequence or structural similarityⁱ
- 16354670

View the complete GO annotation on QuickGO ...

Keywordsⁱ

Biological process	ER-Golgi transport, Protein transport, Transport

Biological process

ER-Golgi transport, Protein transport, Transport

Enzyme and pathway databases

Reactomeⁱ	R-HSA-6811434 COPI-dependent Golgi-to-ER retrograde traffic

Reactomeⁱ

R-HSA-6811434 COPI-dependent Golgi-to-ER retrograde traffic

Names & Taxonomyⁱ

Protein namesⁱ	Recommended name: Vesicle transport protein USE1 Alternative name(s): Putative MAPK-activating protein PM26 USE1-like protein p31
Gene namesⁱ	Name:USE1 Synonyms:USE1L ORF Names:MDS032
Organismⁱ	Homo sapiens (Human)
Taxonomic identifierⁱ	9606 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Dipnotetrapodomorpha › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Boreoeutheria › Euarchontoglires › Primates › Haplorrhini › Simiiformes › Catarrhini › Hominoidea › Hominidae › Homininae › Homo
Proteomesⁱ	UP000005640 Componentⁱ: Chromosome 19

Organism-specific databases

EuPathDBⁱ	HostDB:ENSG00000053501.12
Human Gene Nomenclature Database More...HGNCⁱ	HGNC:30882 USE1
MIMⁱ	610675 gene
neXtProtⁱ	NX_Q9NZ43

Topology

Feature key	Position(s)	DescriptionActions	Length
Topological domainⁱ	1 – 231	CytoplasmicSequence analysisAdd BLAST	231
Transmembraneⁱ	232 – 252	Helical; Anchor for type IV membrane proteinSequence analysisAdd BLAST	21
Topological domainⁱ	253 – 259	LumenalSequence analysis	7

Keywords - Cellular componentⁱ

Endoplasmic reticulum, Membrane

Pathology & Biotechⁱ

Organism-specific databases

DisGeNET More...DisGeNETⁱ	55850
Open Targets More...OpenTargetsⁱ	ENSG00000053501
PharmGKBⁱ	PA162408692

Polymorphism and mutation databases

BioMutaⁱ	USE1
DMDMⁱ	296452858

PTM / Processingⁱ

Molecule processing

Feature key	Position(s)	DescriptionActions	Graphical view	Length
ChainⁱPRO_0000215579	1 – 259	Vesicle transport protein USE1Add BLAST		259

Proteomic databases

EPDⁱ	Q9NZ43
MaxQB - The MaxQuant DataBase More...MaxQBⁱ	Q9NZ43
PaxDbⁱ	Q9NZ43
PeptideAtlas More...PeptideAtlasⁱ	Q9NZ43
PRIDEⁱ	Q9NZ43
ProteomicsDBⁱ	83320 83321 [Q9NZ43-2] 83322 [Q9NZ43-3]

PTM databases

iPTMnetⁱ	Q9NZ43
PhosphoSitePlusⁱ	Q9NZ43

Miscellaneous databases

PMAP-CutDBⁱ	Q9NZ43

PMAP-CutDBⁱ

Q9NZ43

Expressionⁱ

Gene expression databases

Bgeeⁱ	ENSG00000053501 Expressed in 172 organ(s), highest expression level in substantia nigra
CleanExⁱ	HS_USE1
ExpressionAtlasⁱ	Q9NZ43 baseline and differential
Genevisibleⁱ	Q9NZ43 HS

Organism-specific databases

Human Protein Atlas More...HPAⁱ	HPA026851 HPA047562

HPAⁱ

HPA026851
HPA047562

Interactionⁱ

Subunit structureⁱ

Component of a SNARE complex consisting of STX18, USE1L, BNIP1/SEC20L and SEC22B. Interacts directly with STX18.2 Publications

Binary interactionsⁱ

With	Entry	#Exp.	IntAct
MEOX2	P50222	3	EBI-742842,EBI-748397
STX18	Q9P2W9	7	EBI-742842,EBI-725334
TRIM27	P14373	3	EBI-742842,EBI-719493

Protein-protein interaction databases

BioGridⁱ	120952, 52 interactors
IntActⁱ	Q9NZ43, 64 interactors
Molecular INTeraction database More...MINTⁱ	Q9NZ43
STRINGⁱ	9606.ENSP00000263897

Structureⁱ

3D structure databases

ProteinModelPortalⁱ	Q9NZ43
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Family & Domainsⁱ

Coiled coil

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Coiled coilⁱ	152 – 231	Sequence analysisAdd BLAST		80

Sequence similaritiesⁱ

Belongs to the USE1 family.Curated

Keywords - Domainⁱ

Coiled coil, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGⁱ	KOG2678 Eukaryota ENOG410ZN7C LUCA
Ensembl GeneTree More...GeneTreeⁱ	ENSGT00390000014361
HOGENOMⁱ	HOG000007677
HOVERGENⁱ	HBG079328
InParanoidⁱ	Q9NZ43
KEGG Orthology (KO) More...KOⁱ	K08507
OMAⁱ	YKCWLWL
Database of Orthologous Groups More...OrthoDBⁱ	EOG091G0HJ5
PhylomeDBⁱ	Q9NZ43
TreeFamⁱ	TF325006

Family and domain databases

InterProⁱ	View protein in InterPro IPR019150 Vesicle_transport_protein_Use1
PANTHERⁱ	PTHR13050 PTHR13050, 1 hit
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF09753 Use1, 1 hit

Sequences (3+)ⁱ

Sequence statusⁱ: Complete.

This entry describes 3 isoformsⁱ produced by alternative splicing. Align Add to basket

This entry has 3 described isoforms and 4 potential isoforms that are computationally mapped.Show all Align All

Isoform 1 (identifier: Q9NZ43-1) [UniParc]FASTA Add to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MAASRLELNL VRLLSRCEAM AAEKRDPDEW RLEKYVGALE DMLQALKVHA 
        60         70         80         90        100
SKPASEVINE YSWKVDFLKG MLQAEKLTSS SEKALANQFL APGRVPTTAR 
       110        120        130        140        150
ERVPATKTVH LQSRARYTSE MRSELLGTDS AEPEMDVRKR TGVAGSQPVS 
       160        170        180        190        200
EKQLAAELDL VLQRHQNLQE KLAEEMLGLA RSLKTNTLAA QSVIKKDNQT 
       210        220        230        240        250
LSHSLKMADQ NLEKLKTESE RLEQHTQKSV NWLLWAMLII VCFIFISMIL 

FIRIMPKLK

Length:259

Mass (Da):29,371

Last modified:May 18, 2010 - v2

Checksum:ⁱ6538ED0B231AEC05

GO

Isoform 2 (identifier: Q9NZ43-2) [UniParc]FASTA Add to basket

The sequence of this isoform differs from the canonical sequence as follows:
142-146: GVAGS → PCHTH
147-259: Missing.

« Hide

        10         20         30         40         50
MAASRLELNL VRLLSRCEAM AAEKRDPDEW RLEKYVGALE DMLQALKVHA 
        60         70         80         90        100
SKPASEVINE YSWKVDFLKG MLQAEKLTSS SEKALANQFL APGRVPTTAR 
       110        120        130        140 
ERVPATKTVH LQSRARYTSE MRSELLGTDS AEPEMDVRKR TPCHTH

Note: No experimental confirmation available.

Show »

Length:146

Mass (Da):16,511

Checksum:ⁱ307946785B1BAC38

GO

Isoform 3 (identifier: Q9NZ43-3) [UniParc]FASTA Add to basket

The sequence of this isoform differs from the canonical sequence as follows:
132-135: EPEM → GESP
136-259: Missing.

« Hide

        10         20         30         40         50
MAASRLELNL VRLLSRCEAM AAEKRDPDEW RLEKYVGALE DMLQALKVHA 
        60         70         80         90        100
SKPASEVINE YSWKVDFLKG MLQAEKLTSS SEKALANQFL APGRVPTTAR 
       110        120        130 
ERVPATKTVH LQSRARYTSE MRSELLGTDS AGESP

Note: No experimental confirmation available.

Show »

Length:135

Mass (Da):15,063

Checksum:ⁱ22DF3FEF395B8489

GO

Computationally mapped potential isoform sequencesⁱ

There are 4 potential isoforms mapped to this entry.BLAST Align Show all Add to basket

Entry	Entry name	Protein names	Gene names	Length	Annotation

G8JLK1	G8JLK1_HUMAN	Vesicle transport protein USE1 Vesicle transport protein USE1	USE1	256	Annotation score:
M0QYT5	M0QYT5_HUMAN	Vesicle transport protein USE1 Vesicle transport protein USE1	USE1	161	Annotation score:
M0QZE0	M0QZE0_HUMAN	Vesicle transport protein USE1 Vesicle transport protein USE1	USE1	133	Annotation score:
M0QZZ6	M0QZZ6_HUMAN	Vesicle transport protein USE1 Vesicle transport protein USE1	USE1	38	Annotation score:

Experimental Info

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Sequence conflictⁱ	38	A → V in AAH06005 (PubMed:15057824).Curated		1

Natural variant

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Natural variantⁱVAR_021052	154	L → S3 PublicationsCorresponds to variant dbSNP:rs414528Ensembl.		1

Alternative sequence

Feature key	Position(s)	DescriptionActions	Length
Alternative sequenceⁱVSP_012662	132 – 135	EPEM → GESP in isoform 3. 1 Publication	4
Alternative sequenceⁱVSP_012663	136 – 259	Missing in isoform 3. 1 PublicationAdd BLAST	124
Alternative sequenceⁱVSP_012664	142 – 146	GVAGS → PCHTH in isoform 2. 1 Publication	5
Alternative sequenceⁱVSP_012665	147 – 259	Missing in isoform 2. 1 PublicationAdd BLAST	113

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AB097050 mRNA Translation: BAC77403.1 AK074683 mRNA Translation: BAC11136.1 AF220052 mRNA Translation: AAF67645.1 AC020913 Genomic DNA No translation available. BC006005 mRNA Translation: AAH06005.1 BC008455 mRNA Translation: AAH08455.1
The Consensus CDS (CCDS) project More...CCDSⁱ	CCDS46011.1 [Q9NZ43-1]
NCBI Reference Sequences More...RefSeqⁱ	NP_060937.1, NM_018467.3 XP_016882464.1, XM_017026975.1
UniGeneⁱ	Hs.16187

Genome annotation databases

Ensemblⁱ	ENST00000263897; ENSP00000263897; ENSG00000053501 [Q9NZ43-1] ENST00000595101; ENSP00000472362; ENSG00000053501 [Q9NZ43-3] ENST00000596136; ENSP00000473239; ENSG00000053501 [Q9NZ43-2]
GeneIDⁱ	55850
KEGGⁱ	hsa:55850
UCSC genome browser More...UCSCⁱ	uc002nfo.3 human [Q9NZ43-1]

Keywords - Coding sequence diversityⁱ

Alternative splicing, Polymorphism

Similar proteinsⁱ

100% Identity
90% Identity
50% Identity

Protein	Similar proteins		Species	Score	Length	Source
Q9NZ43	Vesicle transport protein USE1 (Fragment)		HUMAN		161	UniRef100_Q9NZ43
UPI0007DC5D57		HUMAN		189
Q9NZ43-2	Uncharacterized protein		MACMU		146	UniRef100_F6PM45
Uncharacterized protein		COLAP		146
USE1 isoform 3		PANTR		146
Uncharacterized protein		CERAT		146
Uncharacterized protein		RHIRO		146
+7
Q9NZ43-3	USE1 isoform 7		PANTR		135	UniRef100_A0A2J8LTV1

Protein	Similar proteins		Species	Score	Length	Source
Q9NZ43	Vesicle transport protein USE1 (Fragment)		HUMAN		161	UniRef90_Q9NZ43
Uncharacterized protein		SHEEP		318
vesicle transport protein USE1		PHYCD		260
Uncharacterized protein		MYOLU		260
Uncharacterized protein (Fragment)		AILME		260
+31
Q9NZ43-2	Uncharacterized protein		MACMU		146	UniRef90_F6PM45
Uncharacterized protein		COLAP		146
USE1 isoform 3		PANTR		146
Uncharacterized protein		CERAT		146
Uncharacterized protein		RHIRO		146
+11
Q9NZ43-3	Uncharacterized protein		MACMU		146	UniRef90_F6PM45
Uncharacterized protein		COLAP		146
USE1 isoform 3		PANTR		146
Uncharacterized protein		CERAT		146
Uncharacterized protein		RHIRO		146
+11

Protein	Similar proteins		Species	Score	Length	Source
Q9NZ43	Vesicle transport protein USE1		MOUSE		270	UniRef50_Q9NZ43
Vesicle transport protein USE1 (Fragment)		HUMAN		161
Uncharacterized protein		SHEEP		318
Uncharacterized protein (Fragment)		AILME		260
Unconventional SNARE in the ER 1		HORSE		260
+290
Q9NZ43-2	Uncharacterized protein		MACMU		146	UniRef50_F6PM45
Uncharacterized protein		COLAP		146
USE1 isoform 3		PANTR		146
Uncharacterized protein		CERAT		146
Uncharacterized protein		RHIRO		146
+18
Q9NZ43-3	Uncharacterized protein		MACMU		146	UniRef50_F6PM45
Uncharacterized protein		COLAP		146
USE1 isoform 3		PANTR		146
Uncharacterized protein		CERAT		146
Uncharacterized protein		RHIRO		146
+18

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AB097050 mRNA Translation: BAC77403.1 AK074683 mRNA Translation: BAC11136.1 AF220052 mRNA Translation: AAF67645.1 AC020913 Genomic DNA No translation available. BC006005 mRNA Translation: AAH06005.1 BC008455 mRNA Translation: AAH08455.1
CCDSⁱ	CCDS46011.1 [Q9NZ43-1]
RefSeqⁱ	NP_060937.1, NM_018467.3 XP_016882464.1, XM_017026975.1
UniGeneⁱ	Hs.16187

3D structure databases

ProteinModelPortalⁱ	Q9NZ43
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protein-protein interaction databases

BioGridⁱ	120952, 52 interactors
IntActⁱ	Q9NZ43, 64 interactors
MINTⁱ	Q9NZ43
STRINGⁱ	9606.ENSP00000263897

PTM databases

iPTMnetⁱ	Q9NZ43
PhosphoSitePlusⁱ	Q9NZ43

Polymorphism and mutation databases

BioMutaⁱ	USE1
DMDMⁱ	296452858

Proteomic databases

EPDⁱ	Q9NZ43
MaxQBⁱ	Q9NZ43
PaxDbⁱ	Q9NZ43
PeptideAtlasⁱ	Q9NZ43
PRIDEⁱ	Q9NZ43
ProteomicsDBⁱ	83320 83321 [Q9NZ43-2] 83322 [Q9NZ43-3]

Protocols and materials databases

The DNASU plasmid repository More...DNASUⁱ	55850
Structural Biology Knowledgebase	Search...

Genome annotation databases

Ensemblⁱ	ENST00000263897; ENSP00000263897; ENSG00000053501 [Q9NZ43-1] ENST00000595101; ENSP00000472362; ENSG00000053501 [Q9NZ43-3] ENST00000596136; ENSP00000473239; ENSG00000053501 [Q9NZ43-2]
GeneIDⁱ	55850
KEGGⁱ	hsa:55850
UCSCⁱ	uc002nfo.3 human [Q9NZ43-1]

Organism-specific databases

CTDⁱ	55850
DisGeNETⁱ	55850
EuPathDBⁱ	HostDB:ENSG00000053501.12
GeneCardsⁱ	USE1
HGNCⁱ	HGNC:30882 USE1
HPAⁱ	HPA026851 HPA047562
MIMⁱ	610675 gene
neXtProtⁱ	NX_Q9NZ43
OpenTargetsⁱ	ENSG00000053501
PharmGKBⁱ	PA162408692
GenAtlas: human gene database More...GenAtlasⁱ	Search...

Phylogenomic databases

eggNOGⁱ	KOG2678 Eukaryota ENOG410ZN7C LUCA
GeneTreeⁱ	ENSGT00390000014361
HOGENOMⁱ	HOG000007677
HOVERGENⁱ	HBG079328
InParanoidⁱ	Q9NZ43
KOⁱ	K08507
OMAⁱ	YKCWLWL
OrthoDBⁱ	EOG091G0HJ5
PhylomeDBⁱ	Q9NZ43
TreeFamⁱ	TF325006

Enzyme and pathway databases

Reactomeⁱ	R-HSA-6811434 COPI-dependent Golgi-to-ER retrograde traffic

Reactomeⁱ

R-HSA-6811434 COPI-dependent Golgi-to-ER retrograde traffic

Miscellaneous databases

GeneWikiⁱ	USE1
GenomeRNAiⁱ	55850
PMAP-CutDBⁱ	Q9NZ43
Protein Ontology More...PROⁱ	PR:Q9NZ43
SOURCEⁱ	Search...

Gene expression databases

Bgeeⁱ	ENSG00000053501 Expressed in 172 organ(s), highest expression level in substantia nigra
CleanExⁱ	HS_USE1
ExpressionAtlasⁱ	Q9NZ43 baseline and differential
Genevisibleⁱ	Q9NZ43 HS

Family and domain databases

InterProⁱ	View protein in InterPro IPR019150 Vesicle_transport_protein_Use1
PANTHERⁱ	PTHR13050 PTHR13050, 1 hit
Pfamⁱ	View protein in Pfam PF09753 Use1, 1 hit
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ	USE1_HUMAN
Accessionⁱ	Q9NZ43Primary (citable) accession number: Q9NZ43 Secondary accession number(s): Q8NCK1, Q9BRT4
Entry historyⁱ	Integrated into UniProtKB/Swiss-Prot:	February 1, 2005
	Last sequence update:	May 18, 2010
	Last modified:	November 7, 2018
	This is version 133 of the entry and version 2 of the sequence. See complete history.
Entry statusⁱ	Reviewed (UniProtKB/Swiss-Prot)
Annotation program	Chordata Protein Annotation Program
Disclaimer	Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousⁱ

Keywords - Technical termⁱ

Complete proteome, Direct protein sequencing, Reference proteome

Documents

SIMILARITY comments
Index of protein domains and families
Human entries with polymorphisms or disease mutations
List of human entries with polymorphisms or disease mutations
Human polymorphisms and disease mutations
Index of human polymorphisms and disease mutations
MIM cross-references
Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
Human chromosome 19
Human chromosome 19: entries, gene names and cross-references to MIM

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UniProtKB - Q9NZ43 (USE1_HUMAN)

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Vesicle transport protein USE1

Select a section on the left to see content.

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

Enzyme and pathway databases

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

Organism-specific databases

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Endoplasmic reticulum

Endoplasmic reticulum

Other locations

Topology

Keywords - Cellular componenti

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Organism-specific databases

Polymorphism and mutation databases

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Proteomic databases

PTM databases

Miscellaneous databases

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Organism-specific databases

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Keywords - Domaini

Phylogenomic databases

Family and domain databases

Experimental Info

Natural variant

Alternative sequence

Sequence databases

Genome annotation databases

Keywords - Coding sequence diversityi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protein-protein interaction databases

PTM databases

Polymorphism and mutation databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Enzyme and pathway databases

Miscellaneous databases

Gene expression databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Documents

UniProt is an ELIXIR core data resource

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Functionⁱ

GO - Biological processⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

Keywords - Cellular componentⁱ

Pathology & Biotechⁱ

PTM / Processingⁱ

Expressionⁱ

Interactionⁱ

Structureⁱ

Family & Domainsⁱ

Sequence similaritiesⁱ

Keywords - Domainⁱ

Keywords - Coding sequence diversityⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ