LRRC4B

Functionⁱ

Synaptic adhesion protein. Regulates the formation of excitatory synapses. The trans-synaptic adhesion between LRRC4B and PTPRF regulates the formation of excitatory synapses in a bidirectional manner (By similarity).By similarity

GO - Molecular functionⁱ

signaling receptor binding Source: Ensembl

View the complete GO annotation on QuickGO ...

GO - Biological processⁱ

positive regulation of synapse assembly Source: BHF-UCL
regulation of postsynaptic density assembly Source: Ensembl
regulation of presynapse assembly Source: Ensembl
synaptic membrane adhesion Source: Ensembl

View the complete GO annotation on QuickGO ...

Enzyme and pathway databases

Reactomeⁱ	R-HSA-388844 Receptor-type tyrosine-protein phosphatases

Reactomeⁱ

R-HSA-388844 Receptor-type tyrosine-protein phosphatases

Names & Taxonomyⁱ

Protein namesⁱ	Recommended name: Leucine-rich repeat-containing protein 4B Alternative name(s): Netrin-G3 ligand Short name: NGL-3
Gene namesⁱ	Name:LRRC4B Synonyms:LRIG4
Organismⁱ	Homo sapiens (Human)
Taxonomic identifierⁱ	9606 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Dipnotetrapodomorpha › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Boreoeutheria › Euarchontoglires › Primates › Haplorrhini › Simiiformes › Catarrhini › Hominoidea › Hominidae › Homininae › Homo
Proteomesⁱ	UP000005640 Componentⁱ: Chromosome 19

Organism-specific databases

EuPathDBⁱ	HostDB:ENSG00000131409.12
Human Gene Nomenclature Database More...HGNCⁱ	HGNC:25042 LRRC4B
neXtProtⁱ	NX_Q9NT99

Topology

Feature key	Position(s)	DescriptionActions	Length
Topological domainⁱ	36 – 576	ExtracellularSequence analysisAdd BLAST	541
Transmembraneⁱ	577 – 597	HelicalSequence analysisAdd BLAST	21
Topological domainⁱ	598 – 713	CytoplasmicSequence analysisAdd BLAST	116

Keywords - Cellular componentⁱ

Cell junction, Cell membrane, Membrane, Synapse

Pathology & Biotechⁱ

Organism-specific databases

DisGeNET More...DisGeNETⁱ	94030
Open Targets More...OpenTargetsⁱ	ENSG00000131409
PharmGKBⁱ	PA134890612

Polymorphism and mutation databases

BioMutaⁱ	LRRC4B
DMDMⁱ	91207142

PTM / Processingⁱ

Molecule processing

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Signal peptideⁱ	1 – 35	Sequence analysisAdd BLAST		35
ChainⁱPRO_0000231654	36 – 713	Leucine-rich repeat-containing protein 4BAdd BLAST		678

Amino acid modifications

Feature key	Position(s)	DescriptionActions	Length
Glycosylationⁱ	224	N-linked (GlcNAc...) asparagineSequence analysis	1
Glycosylationⁱ	283	N-linked (GlcNAc...) asparagineSequence analysis	1
Glycosylationⁱ	333	N-linked (GlcNAc...) asparagineSequence analysis	1
Glycosylationⁱ	374	N-linked (GlcNAc...) asparagineSequence analysis	1
Disulfide bondⁱ	385 ↔ 436	PROSITE-ProRule annotation
Glycosylationⁱ	400	N-linked (GlcNAc...) asparagineSequence analysis	1
Glycosylationⁱ	422	N-linked (GlcNAc...) asparagineSequence analysis	1
Glycosylationⁱ	425	N-linked (GlcNAc...) asparagineSequence analysis	1
Glycosylationⁱ	444	N-linked (GlcNAc...) asparagineSequence analysis	1
Glycosylationⁱ	452	N-linked (GlcNAc...) asparagineSequence analysis	1
Modified residueⁱ	693	PhosphoserineBy similarity	1

Post-translational modificationⁱ

N-glycosylated. O-glycosylated; contains sialic acid.By similarity

Keywords - PTMⁱ

Disulfide bond, Glycoprotein, Phosphoprotein

Proteomic databases

EPDⁱ	Q9NT99
MaxQB - The MaxQuant DataBase More...MaxQBⁱ	Q9NT99
PaxDbⁱ	Q9NT99
PeptideAtlas More...PeptideAtlasⁱ	Q9NT99
PRIDEⁱ	Q9NT99
ProteomicsDBⁱ	82604

PTM databases

iPTMnetⁱ	Q9NT99
PhosphoSitePlusⁱ	Q9NT99

Expressionⁱ

Gene expression databases

Bgeeⁱ	ENSG00000131409 Expressed in 105 organ(s), highest expression level in frontal cortex
CleanExⁱ	HS_LRRC4B
ExpressionAtlasⁱ	Q9NT99 baseline and differential
Genevisibleⁱ	Q9NT99 HS

Organism-specific databases

Human Protein Atlas More...HPAⁱ	HPA058986

HPAⁱ

HPA058986

Interactionⁱ

Subunit structureⁱ

Interacts with PTPRF. Interacts with DLG4.By similarity

GO - Molecular functionⁱ

signaling receptor binding Source: Ensembl

View the complete GO annotation on QuickGO ...

Protein-protein interaction databases

BioGridⁱ	125098, 7 interactors
STRINGⁱ	9606.ENSP00000373853

Structureⁱ

3D structure databases

ProteinModelPortalⁱ	Q9NT99
SMRⁱ	Q9NT99
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Family & Domainsⁱ

Domains and Repeats

Feature key	Position(s)	DescriptionActions	Length
Domainⁱ	48 – 86	LRRNTAdd BLAST	39
Repeatⁱ	87 – 108	LRR 1Add BLAST	22
Repeatⁱ	111 – 132	LRR 2Add BLAST	22
Repeatⁱ	135 – 156	LRR 3Add BLAST	22
Repeatⁱ	159 – 180	LRR 4Add BLAST	22
Repeatⁱ	183 – 205	LRR 5Add BLAST	23
Repeatⁱ	208 – 229	LRR 6Add BLAST	22
Repeatⁱ	230 – 251	LRR 7Add BLAST	22
Repeatⁱ	254 – 275	LRR 8Add BLAST	22
Repeatⁱ	278 – 299	LRR 9Add BLAST	22
Domainⁱ	311 – 363	LRRCTAdd BLAST	53
Domainⁱ	364 – 452	Ig-like C2-typeAdd BLAST	89

Compositional bias

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Compositional biasⁱ	462 – 532	Gly-richAdd BLAST		71
Compositional biasⁱ	633 – 639	Poly-Ala		7

Domainⁱ

The last 4 C-terminal residues bind to the first 2 PDZ domains of DLG4.By similarity

Keywords - Domainⁱ

Immunoglobulin domain, Leucine-rich repeat, Repeat, Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGⁱ	KOG0619 Eukaryota COG4886 LUCA
Ensembl GeneTree More...GeneTreeⁱ	ENSGT00760000118831
HOGENOMⁱ	HOG000252924
HOVERGENⁱ	HBG052359
InParanoidⁱ	Q9NT99
KEGG Orthology (KO) More...KOⁱ	K16360
OMAⁱ	CGGKGPP
Database of Orthologous Groups More...OrthoDBⁱ	EOG091G037N
PhylomeDBⁱ	Q9NT99
TreeFamⁱ	TF324303

Family and domain databases

Gene3Dⁱ	2.60.40.10, 1 hit 3.80.10.10, 1 hit
InterProⁱ	View protein in InterPro IPR000483 Cys-rich_flank_reg_C IPR007110 Ig-like_dom IPR036179 Ig-like_dom_sf IPR013783 Ig-like_fold IPR013098 Ig_I-set IPR003599 Ig_sub IPR003598 Ig_sub2 IPR001611 Leu-rich_rpt IPR003591 Leu-rich_rpt_typical-subtyp IPR032675 LRR_dom_sf IPR026883 LRRC4B IPR000372 LRRNT
PANTHERⁱ	PTHR24369:SF102 PTHR24369:SF102, 1 hit
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF07679 I-set, 1 hit PF00560 LRR_1, 1 hit PF13855 LRR_8, 3 hits
SMARTⁱ	View protein in SMART SM00409 IG, 1 hit SM00408 IGc2, 1 hit SM00369 LRR_TYP, 8 hits SM00082 LRRCT, 1 hit SM00013 LRRNT, 1 hit
SUPFAMⁱ	SSF48726 SSF48726, 1 hit
PROSITEⁱ	View protein in PROSITE PS50835 IG_LIKE, 1 hit PS51450 LRR, 7 hits

Sequence (1+)ⁱ

Sequence statusⁱ: Complete.

Sequence processingⁱ: The displayed sequence is further processed into a mature form.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show all Align All

Q9NT99-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MARARGSPCP PLPPGRMSWP HGALLFLWLF SPPLGAGGGG VAVTSAAGGG 
        60         70         80         90        100
SPPATSCPVA CSCSNQASRV ICTRRDLAEV PASIPVNTRY LNLQENGIQV 
       110        120        130        140        150
IRTDTFKHLR HLEILQLSKN LVRKIEVGAF NGLPSLNTLE LFDNRLTTVP 
       160        170        180        190        200
TQAFEYLSKL RELWLRNNPI ESIPSYAFNR VPSLRRLDLG ELKRLEYISE 
       210        220        230        240        250
AAFEGLVNLR YLNLGMCNLK DIPNLTALVR LEELELSGNR LDLIRPGSFQ 
       260        270        280        290        300
GLTSLRKLWL MHAQVATIER NAFDDLKSLE ELNLSHNNLM SLPHDLFTPL 
       310        320        330        340        350
HRLERVHLNH NPWHCNCDVL WLSWWLKETV PSNTTCCARC HAPAGLKGRY 
       360        370        380        390        400
IGELDQSHFT CYAPVIVEPP TDLNVTEGMA AELKCRTGTS MTSVNWLTPN 
       410        420        430        440        450
GTLMTHGSYR VRISVLHDGT LNFTNVTVQD TGQYTCMVTN SAGNTTASAT 
       460        470        480        490        500
LNVSAVDPVA AGGTGSGGGG PGGSGGVGGG SGGYTYFTTV TVETLETQPG 
       510        520        530        540        550
EEALQPRGTE KEPPGPTTDG VWGGGRPGDA AGPASSSTTA PAPRSSRPTE 
       560        570        580        590        600
KAFTVPITDV TENALKDLDD VMKTTKIIIG CFVAITFMAA VMLVAFYKLR 
       610        620        630        640        650
KQHQLHKHHG PTRTVEIINV EDELPAASAV SVAAAAAVAS GGGVGGDSHL 
       660        670        680        690        700
ALPALERDHL NHHHYVAAAF KAHYSSNPSG GGCGGKGPPG LNSIHEPLLF 
       710 
KSGSKENVQE TQI

Length:713

Mass (Da):76,434

Last modified:April 4, 2006 - v3

Checksum:ⁱ085B5CACE28038D9

GO

Computationally mapped potential isoform sequencesⁱ

There is 1 potential isoform mapped to this entry.BLAST Align Show all Add to basket

	Entry	Entry name		Protein names	Gene names	Length	Annotation

	M0R2G0	M0R2G0_HUMAN		Leucine-rich repeat-containing prot... Leucine-rich repeat-containing protein 4B	LRRC4B	238	Annotation score:

Sequence cautionⁱ

The sequence AAH19687 differs from that shown. Reason: Erroneous initiation.Curated

Experimental Info

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Sequence conflictⁱ	637 – 638	AV → TA in AAH56207 (PubMed:15489334).Curated		2

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AC008743 Genomic DNA No translation available. BC019687 mRNA Translation: AAH19687.1 Different initiation. BC056207 mRNA Translation: AAH56207.1 AL137451 mRNA Translation: CAB70743.2
The Consensus CDS (CCDS) project More...CCDSⁱ	CCDS42595.1
PIRⁱ	T46266
NCBI Reference Sequences More...RefSeqⁱ	NP_001073926.1, NM_001080457.1 NP_001335497.1, NM_001348568.1 XP_005259486.1, XM_005259429.4 XP_006723569.1, XM_006723506.3 XP_011525822.1, XM_011527520.2
UniGeneⁱ	Hs.120873

Genome annotation databases

Ensemblⁱ	ENST00000389201; ENSP00000373853; ENSG00000131409 ENST00000599957; ENSP00000471502; ENSG00000131409
GeneIDⁱ	94030
KEGGⁱ	hsa:94030
UCSC genome browser More...UCSCⁱ	uc002pss.4 human

Similar proteinsⁱ

100% Identity
90% Identity
50% Identity

Protein	Similar proteins		Species	Score	Length	Source
Q9NT99	Leucine rich repeat containing 4B		PANTR		715	UniRef100_Q9NT99
HCG1641511, isoform CRA_a		HUMAN		713
LRRC4B isoform 1		PONAB		713
LRRC4B isoform 1		PANTR		713

Protein	Similar proteins		Species	Score	Length	Source
Q9NT99	Leucine-rich repeat-containing protein 4B		RAT		709	UniRef90_P0CC10
Leucine-rich repeat-containing protein 4B	)	MOUSE		709
Leucine rich repeat containing 4B		GORGO		777
LRRC4B protein (Fragment)		HUMAN		634
LRRC4B isoform 3 (Fragment)		PONAB		238
+85

Protein	Similar proteins		Species	Score	Length	Source
Q9NT99	Leucine-rich repeat-containing protein 4B		RAT		709	UniRef50_P0CC10
Leucine-rich repeat-containing protein 4B	)	MOUSE		709
Leucine rich repeat containing 4B		GORGO		777
LRRC4B protein (Fragment)		HUMAN		634
LRRC4B isoform 3 (Fragment)		PONAB		238
+89

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AC008743 Genomic DNA No translation available. BC019687 mRNA Translation: AAH19687.1 Different initiation. BC056207 mRNA Translation: AAH56207.1 AL137451 mRNA Translation: CAB70743.2
CCDSⁱ	CCDS42595.1
PIRⁱ	T46266
RefSeqⁱ	NP_001073926.1, NM_001080457.1 NP_001335497.1, NM_001348568.1 XP_005259486.1, XM_005259429.4 XP_006723569.1, XM_006723506.3 XP_011525822.1, XM_011527520.2
UniGeneⁱ	Hs.120873

3D structure databases

ProteinModelPortalⁱ	Q9NT99
SMRⁱ	Q9NT99
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protein-protein interaction databases

BioGridⁱ	125098, 7 interactors
STRINGⁱ	9606.ENSP00000373853

PTM databases

iPTMnetⁱ	Q9NT99
PhosphoSitePlusⁱ	Q9NT99

Polymorphism and mutation databases

BioMutaⁱ	LRRC4B
DMDMⁱ	91207142

Proteomic databases

EPDⁱ	Q9NT99
MaxQBⁱ	Q9NT99
PaxDbⁱ	Q9NT99
PeptideAtlasⁱ	Q9NT99
PRIDEⁱ	Q9NT99
ProteomicsDBⁱ	82604

Protocols and materials databases

The DNASU plasmid repository More...DNASUⁱ	94030
Structural Biology Knowledgebase	Search...

Genome annotation databases

Ensemblⁱ	ENST00000389201; ENSP00000373853; ENSG00000131409 ENST00000599957; ENSP00000471502; ENSG00000131409
GeneIDⁱ	94030
KEGGⁱ	hsa:94030
UCSCⁱ	uc002pss.4 human

Organism-specific databases

CTDⁱ	94030
DisGeNETⁱ	94030
EuPathDBⁱ	HostDB:ENSG00000131409.12
GeneCardsⁱ	LRRC4B
H-InvDBⁱ	HIX0015363
HGNCⁱ	HGNC:25042 LRRC4B
HPAⁱ	HPA058986
neXtProtⁱ	NX_Q9NT99
OpenTargetsⁱ	ENSG00000131409
PharmGKBⁱ	PA134890612
GenAtlas: human gene database More...GenAtlasⁱ	Search...

Phylogenomic databases

eggNOGⁱ	KOG0619 Eukaryota COG4886 LUCA
GeneTreeⁱ	ENSGT00760000118831
HOGENOMⁱ	HOG000252924
HOVERGENⁱ	HBG052359
InParanoidⁱ	Q9NT99
KOⁱ	K16360
OMAⁱ	CGGKGPP
OrthoDBⁱ	EOG091G037N
PhylomeDBⁱ	Q9NT99
TreeFamⁱ	TF324303

Enzyme and pathway databases

Reactomeⁱ	R-HSA-388844 Receptor-type tyrosine-protein phosphatases

Reactomeⁱ

R-HSA-388844 Receptor-type tyrosine-protein phosphatases

Miscellaneous databases

ChiTaRSⁱ	LRRC4B human
GenomeRNAiⁱ	94030
Protein Ontology More...PROⁱ	PR:Q9NT99

Gene expression databases

Bgeeⁱ	ENSG00000131409 Expressed in 105 organ(s), highest expression level in frontal cortex
CleanExⁱ	HS_LRRC4B
ExpressionAtlasⁱ	Q9NT99 baseline and differential
Genevisibleⁱ	Q9NT99 HS

Family and domain databases

Gene3Dⁱ	2.60.40.10, 1 hit 3.80.10.10, 1 hit
InterProⁱ	View protein in InterPro IPR000483 Cys-rich_flank_reg_C IPR007110 Ig-like_dom IPR036179 Ig-like_dom_sf IPR013783 Ig-like_fold IPR013098 Ig_I-set IPR003599 Ig_sub IPR003598 Ig_sub2 IPR001611 Leu-rich_rpt IPR003591 Leu-rich_rpt_typical-subtyp IPR032675 LRR_dom_sf IPR026883 LRRC4B IPR000372 LRRNT
PANTHERⁱ	PTHR24369:SF102 PTHR24369:SF102, 1 hit
Pfamⁱ	View protein in Pfam PF07679 I-set, 1 hit PF00560 LRR_1, 1 hit PF13855 LRR_8, 3 hits
SMARTⁱ	View protein in SMART SM00409 IG, 1 hit SM00408 IGc2, 1 hit SM00369 LRR_TYP, 8 hits SM00082 LRRCT, 1 hit SM00013 LRRNT, 1 hit
SUPFAMⁱ	SSF48726 SSF48726, 1 hit
PROSITEⁱ	View protein in PROSITE PS50835 IG_LIKE, 1 hit PS51450 LRR, 7 hits
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ	LRC4B_HUMAN
Accessionⁱ	Q9NT99Primary (citable) accession number: Q9NT99 Secondary accession number(s): Q3ZCQ4, Q58F20
Entry historyⁱ	Integrated into UniProtKB/Swiss-Prot:	April 4, 2006
	Last sequence update:	April 4, 2006
	Last modified:	November 7, 2018
	This is version 137 of the entry and version 3 of the sequence. See complete history.
Entry statusⁱ	Reviewed (UniProtKB/Swiss-Prot)
Annotation program	Chordata Protein Annotation Program
Disclaimer	Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousⁱ

Keywords - Technical termⁱ

Complete proteome, Reference proteome

Documents

Human chromosome 19
Human chromosome 19: entries, gene names and cross-references to MIM

UniProtKB

UniParc

Help

UniRef

Proteomes

Annotation systems

Supporting data

UniProtKB - Q9NT99 (LRC4B_HUMAN)

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Leucine-rich repeat-containing protein 4B

Select a section on the left to see content.

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

Organism-specific databases

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Plasma membrane

Other locations

Plasma Membrane

Other locations

Topology

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Organism-specific databases

Polymorphism and mutation databases

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Amino acid modifications

Keywords - PTMi

Proteomic databases

PTM databases

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Organism-specific databases

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

GO - Molecular functioni

Protein-protein interaction databases

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Compositional bias

Keywords - Domaini

Phylogenomic databases

Family and domain databases

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

Experimental Info

Sequence databases

Genome annotation databases

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protein-protein interaction databases

PTM databases

Polymorphism and mutation databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Enzyme and pathway databases

Miscellaneous databases

Gene expression databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Documents

UniProt is an ELIXIR core data resource

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Functionⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

Pathology & Biotechⁱ

PTM / Processingⁱ

Keywords - PTMⁱ

Expressionⁱ

Interactionⁱ

GO - Molecular functionⁱ

Structureⁱ

Family & Domainsⁱ

Keywords - Domainⁱ

Sequence cautionⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ