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Protein
Submitted name:

COLlagen

Gene

col-124

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Submitted name:
COLlagenImported
Gene namesi
Name:col-124Imported
ORF Names:C24F3.6Imported, CELE_C24F3.6Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditinaRhabditomorphaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiC24F3.6 ; CE18523 ; WBGene00000698 ; col-124

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei12 – 36HelicalSequence analysisAdd BLAST25

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

EPDiQ9NAR3
PaxDbiQ9NAR3
PeptideAtlasiQ9NAR3

Expressioni

Gene expression databases

BgeeiWBGene00000698 Expressed in 5 organ(s), highest expression level in material anatomical entity

Interactioni

Protein-protein interaction databases

STRINGi6239.C24F3.6.1

Structurei

3D structure databases

ProteinModelPortaliQ9NAR3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini12 – 64Col_cuticle_NInterPro annotationAdd BLAST53

Keywords - Domaini

CollagenImported, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG3544 Eukaryota
ENOG410XNMM LUCA
GeneTreeiENSGT00690000102313
HOGENOMiHOG000085656
InParanoidiQ9NAR3
OMAiVFFEDGH
OrthoDBiEOG091G0VSH
PhylomeDBiQ9NAR3

Family and domain databases

InterProiView protein in InterPro
IPR002486 Col_cuticle_N
PfamiView protein in Pfam
PF01484 Col_cuticle_N, 1 hit
SMARTiView protein in SMART
SM01088 Col_cuticle_N, 1 hit

Sequencei

Sequence statusi: Complete.

Q9NAR3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDIDSRIKAY RFVGYAALTF STIAVLSVCI TLPMMYNYIH HTRKVMHSDI
60 70 80 90 100
VECKSEAQRL FSQVNRIPDL MMAHNRTARQ AGEGNGQCEG CCLPGAQGPP
110 120 130 140 150
GTPGSAGRPG KPGAPGLNGN PGRPPKEPCE PLTPPPCKPC PEGPPGPAGP
160 170 180 190 200
PGPDGNKGPL GPPGPPGPEG PNGEPGNKGP AGPPGPGGKP GPAGPPGENG
210 220 230 240 250
NNGEPQPGAP GEPGQPGQPG QRGPAGEPGK DGSPGGQGEK GASGEPGQPG
260 270 280 290
RDGQPGHPGQ PGKDGRPGEK GVCPKYCALD GGVFFEDGHR R
Length:291
Mass (Da):29,191
Last modified:October 1, 2000 - v1
Checksum:i8A8F3685823A3534
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA Translation: CAB97232.1
RefSeqiNP_501867.1, NM_069466.4
UniGeneiCel.13486

Genome annotation databases

EnsemblMetazoaiC24F3.6.1; C24F3.6.1; WBGene00000698
C24F3.6.2; C24F3.6.2; WBGene00000698
GeneIDi177901
KEGGicel:CELE_C24F3.6
UCSCiC24F3.6.1 c. elegans

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA Translation: CAB97232.1
RefSeqiNP_501867.1, NM_069466.4
UniGeneiCel.13486

3D structure databases

ProteinModelPortaliQ9NAR3
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.C24F3.6.1

Proteomic databases

EPDiQ9NAR3
PaxDbiQ9NAR3
PeptideAtlasiQ9NAR3

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC24F3.6.1; C24F3.6.1; WBGene00000698
C24F3.6.2; C24F3.6.2; WBGene00000698
GeneIDi177901
KEGGicel:CELE_C24F3.6
UCSCiC24F3.6.1 c. elegans

Organism-specific databases

CTDi177901
WormBaseiC24F3.6 ; CE18523 ; WBGene00000698 ; col-124

Phylogenomic databases

eggNOGiKOG3544 Eukaryota
ENOG410XNMM LUCA
GeneTreeiENSGT00690000102313
HOGENOMiHOG000085656
InParanoidiQ9NAR3
OMAiVFFEDGH
OrthoDBiEOG091G0VSH
PhylomeDBiQ9NAR3

Gene expression databases

BgeeiWBGene00000698 Expressed in 5 organ(s), highest expression level in material anatomical entity

Family and domain databases

InterProiView protein in InterPro
IPR002486 Col_cuticle_N
PfamiView protein in Pfam
PF01484 Col_cuticle_N, 1 hit
SMARTiView protein in SMART
SM01088 Col_cuticle_N, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiQ9NAR3_CAEEL
AccessioniPrimary (citable) accession number: Q9NAR3
Entry historyiIntegrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: November 7, 2018
This is version 108 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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