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Protein
Submitted name:

COLlagen

Gene

col-109

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
COLlagenImported
Gene namesi
Name:col-109Imported
ORF Names:CELE_Y38C1BA.3Imported, Y38C1BA.3Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiY38C1BA.3 ; CE21569 ; WBGene00000683 ; col-109

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei12 – 35HelicalSequence analysisAdd BLAST24

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

EPDiQ9N527
PaxDbiQ9N527
PeptideAtlasiQ9N527

Expressioni

Gene expression databases

BgeeiWBGene00000683 Expressed in 4 organ(s), highest expression level in multi-cellular organism

Interactioni

Protein-protein interaction databases

STRINGi6239.Y38C1BA.3.2

Structurei

3D structure databases

ProteinModelPortaliQ9N527
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini11 – 63Col_cuticle_NInterPro annotationAdd BLAST53

Keywords - Domaini

CollagenImported, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG3544 Eukaryota
ENOG410XNMM LUCA
GeneTreeiENSGT00910000145162
HOGENOMiHOG000085656
InParanoidiQ9N527
OMAiPPIVCEE
OrthoDBiEOG091G0T9U
PhylomeDBiQ9N527

Family and domain databases

InterProiView protein in InterPro
IPR002486 Col_cuticle_N
IPR008160 Collagen
PfamiView protein in Pfam
PF01484 Col_cuticle_N, 1 hit
PF01391 Collagen, 2 hits
SMARTiView protein in SMART
SM01088 Col_cuticle_N, 1 hit

Sequencei

Sequence statusi: Complete.

Q9N527-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEDTREKAYK AVTYSAVTFS FLAILSVCIS MPIIYNFVDS IHQQTKRDMT
60 70 80 90 100
FCKSTARDIM SEISHKKPIA AAIAGNLTTI RNKRQAVGCA GCCKPGHPGR
110 120 130 140 150
PGLPGRNGKP GVPGAPGRPG TPGRPPIVCE EQDVPPCNPC PPGPPGPQGP
160 170 180 190 200
TGNSGQPGRP GNPGRPGSPG TPGPVGPNGA SGDSGAPGND GEKGEPGRPA
210 220 230 240 250
QSTPSTPGEP GNPGDAGATG APGDDGAPGR DGQPGQSGPP GPPGPPGNVG
260 270 280 290
EAGPPGKPGQ PGLPGPQGER GICPKYCALD GGVFFEDGTR R
Length:291
Mass (Da):28,981
Last modified:October 1, 2000 - v1
Checksum:iC5B0C61FA507E049
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA Translation: CCD72729.1
RefSeqiNP_500138.1, NM_067737.4
UniGeneiCel.12082

Genome annotation databases

EnsemblMetazoaiY38C1BA.3; Y38C1BA.3; WBGene00000683
GeneIDi176988
KEGGicel:CELE_Y38C1BA.3
UCSCiY38C1BA.3 c. elegans

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA Translation: CCD72729.1
RefSeqiNP_500138.1, NM_067737.4
UniGeneiCel.12082

3D structure databases

ProteinModelPortaliQ9N527
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.Y38C1BA.3.2

Proteomic databases

EPDiQ9N527
PaxDbiQ9N527
PeptideAtlasiQ9N527

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiY38C1BA.3; Y38C1BA.3; WBGene00000683
GeneIDi176988
KEGGicel:CELE_Y38C1BA.3
UCSCiY38C1BA.3 c. elegans

Organism-specific databases

CTDi176988
WormBaseiY38C1BA.3 ; CE21569 ; WBGene00000683 ; col-109

Phylogenomic databases

eggNOGiKOG3544 Eukaryota
ENOG410XNMM LUCA
GeneTreeiENSGT00910000145162
HOGENOMiHOG000085656
InParanoidiQ9N527
OMAiPPIVCEE
OrthoDBiEOG091G0T9U
PhylomeDBiQ9N527

Gene expression databases

BgeeiWBGene00000683 Expressed in 4 organ(s), highest expression level in multi-cellular organism

Family and domain databases

InterProiView protein in InterPro
IPR002486 Col_cuticle_N
IPR008160 Collagen
PfamiView protein in Pfam
PF01484 Col_cuticle_N, 1 hit
PF01391 Collagen, 2 hits
SMARTiView protein in SMART
SM01088 Col_cuticle_N, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiQ9N527_CAEEL
AccessioniPrimary (citable) accession number: Q9N527
Entry historyiIntegrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: September 12, 2018
This is version 107 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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