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UniProtKB - Q9N4J2 (VIT3_CAEEL)

Entry version 114 (26 Feb 2020)
Sequence version 1 (01 Oct 2000)
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Protein

Vitellogenin-3

Gene

vit-3

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Precursor of the egg-yolk proteins that are sources of nutrients during embryonic development.Curated

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionStorage protein

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Vitellogenin-3
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:vit-3
ORF Names:F59D8.1
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCaenorhabditis elegans
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri6239 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Ecdysozoa › Nematoda › Chromadorea › Rhabditida › Rhabditina › Rhabditomorpha › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001940 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome X

Organism-specific databases

WormBase

More...WormBasei		F59D8.1 ; CE20900 ; WBGene00006927 ; vit-3

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Secreted

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 15Sequence analysisAdd BLAST15
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000004153416 – 1603Vitellogenin-3Add BLAST1588

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi1266N-linked (GlcNAc...) asparagine2 Publications1

Keywords - PTMi

Glycoprotein

Proteomic databases

Encyclopedia of Proteome Dynamics

More...EPDi		Q9N4J2

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		Q9N4J2

PeptideAtlas

More...PeptideAtlasi		Q9N4J2

PRoteomics IDEntifications database

More...PRIDEi		Q9N4J2

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		Q9N4J2

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...Bgeei		WBGene00006927 Expressed in adult organism and 1 other tissue

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

Protein interaction database and analysis system

More...IntActi		Q9N4J2, 1 interactor

STRING: functional protein association networks

More...STRINGi		6239.F59D8.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		Q9N4J2

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini24 – 685VitellogeninPROSITE-ProRule annotationAdd BLAST662
Domaini1306 – 1507VWFDPROSITE-ProRule annotationAdd BLAST202

Keywords - Domaini

Signal

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG4338 Eukaryota
ENOG411104F LUCA

Ensembl GeneTree

More...GeneTreei		ENSGT00530000064273

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_003821_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		Q9N4J2

Identification of Orthologs from Complete Genome Data

More...OMAi		HRAIYFY

Database of Orthologous Groups

More...OrthoDBi		36651at2759

Database for complete collections of gene phylogenies

More...PhylomeDBi		Q9N4J2

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		1.25.10.20, 1 hit
2.30.230.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR015819 Lipid_transp_b-sht_shell
IPR001747 Lipid_transpt_N
IPR011030 Lipovitellin_superhlx_dom
IPR015816 Vitellinogen_b-sht_N
IPR015255 Vitellinogen_open_b-sht
IPR001846 VWF_type-D

Pfam protein domain database

More...Pfami		View protein in Pfam
PF09172 DUF1943, 1 hit
PF01347 Vitellogenin_N, 1 hit
PF00094 VWD, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM01169 DUF1943, 1 hit
SM00638 LPD_N, 1 hit
SM00216 VWD, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF48431 SSF48431, 1 hit
SSF56968 SSF56968, 2 hits

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS51211 VITELLOGENIN, 1 hit
PS51233 VWFD, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

Q9N4J2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKSIIIASLV ALAIAASPAL DRTFSPKSEY VYKFDGLLLS GLPTTFSDAS 
        60         70         80         90        100
QTLISCRTRL QAVDDRYIHL QLIDIQYSAS HIPQSEQWPK IKSLEQRELS 
       110        120        130        140        150
DELKELLELP FRAQIRNGLV SEIQFSSEDA EWSKNAKRSI LNLFSLRKSA 
       160        170        180        190        200
PVDEMSQDQK DMESDKDSLF FNVHEKTMEG DCEVAYTIVQ EGEKTIYTKS 
       210        220        230        240        250
VNFDKCITRP ETAYGLRFGS ECKECEKEGQ FVKPQTVYTY TFKNEKLQES 
       260        270        280        290        300
EVHSIYTLNV NGQEVVKSET RSKVTFVEES KINREIKKVS GPKEEIVYSM 
       310        320        330        340        350
ENEKLIEQFY QQGDQAEVNP FKAIEMEQKV EQLDEIFRQI QEHEQNTPET 
       360        370        380        390        400
VHLIARAVRM FRMCTIEELK KVHTTIYTKA EKKVQLVIET TLAVAGTKNT 
       410        420        430        440        450
IQHLIHHFEK KSITPLRAAE LLKSVQETLY PSEHIADLLI QLAQSPLSEK 
       460        470        480        490        500
YEPLRQSAWL AAGSVVRGFA SKTQDLPLIR PASRQTKEKY VRVFMQHFRN 
       510        520        530        540        550
ADSTYEKVLA LKTLGNAGID LSVYELVQLI QDPRQPLSIR TEAVDALRLL 
       560        570        580        590        600
KDVMPRKIQK VLLPVYKNRQ NKPELRMAAL WRMMHTIPEE PVLAHIVSQM 
       610        620        630        640        650
ENESNQHVAA FTYNVLRQFS KSTNPCYQQL AVRCSKVLLF TRYQPQEQML 
       660        670        680        690        700
STYSQLPLFN SEWLSGVQFD FATIFEKNAF LPKEVQASFE TVFGGNWNKY 
       710        720        730        740        750
FAQVGFSQQN FEQVILKTLE KLSLYGKQSD ELRSRRVQSG IQMLQEIVKK 
       760        770        780        790        800
MNIRPRVQQT DSQNAHAVFY LRYKEMDYIV LPIDMETIDN VVEKYVRNGE 
       810        820        830        840        850
FDIKSLLTFL TNDSKFELHR ALFFYEAERR IPTTIGMPLT ISGKMPTILS 
       860        870        880        890        900
INGKVSIELE KLGARLVLDI VPTVATTHVT EMRFWYPVIE QGVKSLQSAR 
       910        920        930        940        950
LHTPLRFEST VELKKNTLEI THKFVVPENK KTTVSVHTRP VAFIRVPKNQ 
       960        970        980        990       1000
DSEYVETEEK TISHSQYQMS TEEIDRQYET FGLRINAQGN VLSQWTLPMV 
      1010       1020       1030       1040       1050
LMTEQDFEFT LENKNRPVEF TARVTIGNLE KTDLSEIKFD KIFEKEFDLE 
      1060       1070       1080       1090       1100
NNESENRRQY FHKMIREIQS EQGFKNLITL KLEAPQQMYW NTELRTVCDK 
      1110       1120       1130       1140       1150
WIRMCKVEMD ARRSPMEHEN KEWTLRTELL AARPQMPSSL RQLREQPHRE 
      1160       1170       1180       1190       1200
VQLALNAKWG SSKKSEITFN AQLEQSTEQK KFLRNIEREY KGIPEYELLI 
      1210       1220       1230       1240       1250
KAARLNQVNV VSEYKLTPES EYTFSRIFDL IKAYNFWTVS EKRVQNEDRR 
      1260       1270       1280       1290       1300
VVLQLSVEPL SRQYMNMTIQ TPEQEVELKN VRIPRVVLPT IARRAMFQQT 
      1310       1320       1330       1340       1350
WEKTGATCKV GQSEVSTFDN VIYRAPLTTC YSLVAKDCSE QPRFAVLAKK 
      1360       1370       1380       1390       1400
INKNSEELLV KVVRREEEIV VKKSDDKFLV KVDEKKVNPT ELEQYNIEIL 
      1410       1420       1430       1440       1450
GDNLIVIRLP HGEVRFDGYT VKTNMPSVAS QNQLCGLCGN NDGERDNEFM 
      1460       1470       1480       1490       1500
TADNYETEDV EEFHRSYLLK NEECEVENDR ISEKKNYRNK WNREEKKSDY 
      1510       1520       1530       1540       1550
VSSSDYENNY DEKETENQLF KKTLIKEFSN RVCFSIEPVS ECRRGLESEK 
      1560       1570       1580       1590       1600
TSNEKIRFTC MPRHSKNARR FLKEAREQTV ADLVDFPVSF VESVKIPTAC 

VAY
Length:1,603
Mass (Da):186,530
Last modified:October 1, 2000 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iBCA0276E477D37DE
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
FO081486 Genomic DNA Translation: CCD71957.1

NCBI Reference Sequences

More...RefSeqi		NP_001294839.1, NM_001307910.1

Genome annotation databases

Ensembl metazoan genome annotation project

More...EnsemblMetazoai		F59D8.1.1; F59D8.1.1; WBGene00006927

Database of genes from NCBI RefSeq genomes

More...GeneIDi		24104675

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		cel:CELE_F59D8.1

UCSC genome browser

More...UCSCi		F59D8.1 c. elegans

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO081486 Genomic DNA Translation: CCD71957.1
RefSeqiNP_001294839.1, NM_001307910.1

3D structure databases

SMRiQ9N4J2
ModBaseiSearch...

Protein-protein interaction databases

IntActiQ9N4J2, 1 interactor
STRINGi6239.F59D8.1

PTM databases

iPTMnetiQ9N4J2

Proteomic databases

EPDiQ9N4J2
PaxDbiQ9N4J2
PeptideAtlasiQ9N4J2
PRIDEiQ9N4J2

Genome annotation databases

EnsemblMetazoaiF59D8.1.1; F59D8.1.1; WBGene00006927
GeneIDi24104675
KEGGicel:CELE_F59D8.1
UCSCiF59D8.1 c. elegans

Organism-specific databases

Comparative Toxicogenomics Database

More...CTDi		24104675
WormBaseiF59D8.1 ; CE20900 ; WBGene00006927 ; vit-3

Phylogenomic databases

eggNOGiKOG4338 Eukaryota
ENOG411104F LUCA
GeneTreeiENSGT00530000064273
HOGENOMiCLU_003821_0_0_1
InParanoidiQ9N4J2
OMAiHRAIYFY
OrthoDBi36651at2759
PhylomeDBiQ9N4J2

Miscellaneous databases

Protein Ontology

More...PROi		PR:Q9N4J2

Gene expression databases

BgeeiWBGene00006927 Expressed in adult organism and 1 other tissue

Family and domain databases

Gene3Di1.25.10.20, 1 hit
2.30.230.10, 1 hit
InterProiView protein in InterPro
IPR015819 Lipid_transp_b-sht_shell
IPR001747 Lipid_transpt_N
IPR011030 Lipovitellin_superhlx_dom
IPR015816 Vitellinogen_b-sht_N
IPR015255 Vitellinogen_open_b-sht
IPR001846 VWF_type-D
PfamiView protein in Pfam
PF09172 DUF1943, 1 hit
PF01347 Vitellogenin_N, 1 hit
PF00094 VWD, 1 hit
SMARTiView protein in SMART
SM01169 DUF1943, 1 hit
SM00638 LPD_N, 1 hit
SM00216 VWD, 1 hit
SUPFAMiSSF48431 SSF48431, 1 hit
SSF56968 SSF56968, 2 hits
PROSITEiView protein in PROSITE
PS51211 VITELLOGENIN, 1 hit
PS51233 VWFD, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiVIT3_CAEEL
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9N4J2
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 28, 2003
Last sequence update: October 1, 2000
Last modified: February 26, 2020
This is version 114 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
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