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Protein

Probable small nuclear ribonucleoprotein G

Gene

snr-7

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Associated with the spliceosome snRNP U1, U2, U4/U6 and U5.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, RNA-binding
Biological processmRNA processing, mRNA splicing

Enzyme and pathway databases

ReactomeiR-CEL-72163 mRNA Splicing - Major Pathway
R-CEL-72165 mRNA Splicing - Minor Pathway

Names & Taxonomyi

Protein namesi
Recommended name:
Probable small nuclear ribonucleoprotein G
Short name:
snRNP-G
Alternative name(s):
Sm protein G
Short name:
Sm-G
Short name:
SmG
Gene namesi
Name:snr-7
ORF Names:Y71F9B.4
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiY71F9B.4 ; CE22871 ; WBGene00004920 ; snr-7

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus, Spliceosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001255471 – 77Probable small nuclear ribonucleoprotein GAdd BLAST77

Proteomic databases

EPDiQ9N4G9
PaxDbiQ9N4G9
PeptideAtlasiQ9N4G9
PRIDEiQ9N4G9

Expressioni

Gene expression databases

BgeeiWBGene00004920

Interactioni

Protein-protein interaction databases

BioGridi37315, 2 interactors
IntActiQ9N4G9, 5 interactors
STRINGi6239.Y71F9B.4.1

Structurei

3D structure databases

ProteinModelPortaliQ9N4G9
SMRiQ9N4G9
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the snRNP Sm proteins family.Curated

Phylogenomic databases

eggNOGiKOG1780 Eukaryota
ENOG41122Q1 LUCA
GeneTreeiENSGT00510000046985
HOGENOMiHOG000223546
InParanoidiQ9N4G9
KOiK11099
OMAiMDKEMDL
OrthoDBiEOG091G14J2
PhylomeDBiQ9N4G9

Family and domain databases

CDDicd01719 Sm_G, 1 hit
InterProiView protein in InterPro
IPR001163 LSM_dom_euk/arc
IPR010920 LSM_dom_sf
IPR034098 Sm_G
PfamiView protein in Pfam
PF01423 LSM, 1 hit
SMARTiView protein in SMART
SM00651 Sm, 1 hit
SUPFAMiSSF50182 SSF50182, 1 hit

Sequencei

Sequence statusi: Complete.

Q9N4G9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKTHPPELK KYMDKEMDLK LNGNRRVSGI LRGFDPFMNM VIDEAVEYQK
60 70
DGGSVNLGMT VIRGNSVVIM EPKERIS
Length:77
Mass (Da):8,743
Last modified:October 1, 2000 - v1
Checksum:iDD0AC56F20850A0E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO081276 Genomic DNA Translation: CCD70411.1
AF303264 mRNA Translation: AAG50222.1
RefSeqiNP_491032.1, NM_058631.5
UniGeneiCel.19416

Genome annotation databases

EnsemblMetazoaiY71F9B.4; Y71F9B.4; WBGene00004920
GeneIDi171834
KEGGicel:CELE_Y71F9B.4
UCSCiY71F9B.4 c. elegans

Similar proteinsi

Entry informationi

Entry nameiRUXG_CAEEL
AccessioniPrimary (citable) accession number: Q9N4G9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 28, 2003
Last sequence update: October 1, 2000
Last modified: February 28, 2018
This is version 112 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. SIMILARITY comments
    Index of protein domains and families

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