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Entry version 115 (29 Sep 2021)
Sequence version 2 (01 Jul 2008)
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Protein

Collagen alpha-1(XVII) chain

Gene

COL17A1

Organism
Canis lupus familiaris (Dog) (Canis familiaris)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

The 120 kDa linear IgA disease antigen homolog is an anchoring filament component involved in dermal-epidermal cohesion.

By similarity

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Collagen alpha-1(XVII) chain
Alternative name(s):
180 kDa bullous pemphigoid antigen 2
Bullous pemphigoid antigen 2
Cleaved into the following chain:
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:COL17A1
Synonyms:BP180, BPAG2
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCanis lupus familiaris (Dog) (Canis familiaris)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9615 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCarnivoraCaniformiaCanidaeCanis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002254 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 28

Organism-specific databases

Vertebrate Gene Nomenclature Database

More...
VGNCi
VGNC:39462, COL17A1

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the subcellular compartment where each non-membrane region of a membrane-spanning protein is found.<p><a href='/help/topo_dom' target='_top'>More...</a></p>Topological domaini1 – 468CytoplasmicSequence analysisAdd BLAST468
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei469 – 489Helical; Signal-anchor for type II membrane proteinSequence analysisAdd BLAST21
Topological domaini490 – 1597ExtracellularSequence analysisAdd BLAST1108

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Basement membrane, Cell junction, Extracellular matrix, Membrane, Secreted

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the 'Pathology and Biotech' section provides information on the disease(s) associated with genetic variations in a given protein. The information is extracted from the scientific literature and diseases that are also described in the <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=omim">OMIM</a> database are represented with a <a href="http://www.uniprot.org/diseases">controlled vocabulary</a> in the following way:<p><a href='/help/involvement_in_disease' target='_top'>More...</a></p>Involvement in diseasei

Defects in COL17A1 are the cause of generalized atrophic benign epidermolysis bullosa. This nonlethal form of junctional epidermolysis bullosa is characterized by life-long blistering of the skin, associated with hair and tooth abnormalities.1 Publication

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00000594051 – 1597Collagen alpha-1(XVII) chainAdd BLAST1597
ChainiPRO_0000342554525 – 1597120 kDa linear IgA disease antigen homologBy similarityAdd BLAST1073

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi1493N-linked (GlcNAc...) asparagineSequence analysis1

<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM/processing</a> section describes post-translational modifications (PTMs). This subsection <strong>complements</strong> the information provided at the sequence level or describes modifications for which <strong>position-specific data is not yet available</strong>.<p><a href='/help/post-translational_modification' target='_top'>More...</a></p>Post-translational modificationi

The intracellular/endo domain is disulfide-linked.By similarity
Prolines at the third position of the tripeptide repeating unit (G-X-Y) are hydroxylated in some or all of the chains.
The ectodomain is shedded from the surface of keratinocytes resulting in a 120-kDa soluble form, also named as 120 kDa linear IgA disease antigen homolog. The shedding is mediated by membrane-bound metalloproteases (By similarity).By similarity

Keywords - PTMi

Disulfide bond, Glycoprotein, Hydroxylation

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q9N281

PRoteomics IDEntifications database

More...
PRIDEi
Q9N281

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified 'at protein level'.<br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Upper lamina lucidalhemidesmosome.1 Publication

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSCAFG00000010547, Expressed in keratinocyte and 48 other tissues

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Homotrimers of alpha 1(XVII)chains.

Interacts (via cytoplasmic region) with ITGB4 (via cytoplasmic region).

Interacts (via cytoplasmic region) with DST (via N-terminus).

Interacts (via N-terminus) with PLEC.

Interacts (via cytoplasmic region) with DSP (By similarity).

By similarity

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
9612.ENSCAFP00000037321

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q9N281

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 567Nonhelical region (NC16A)Add BLAST567
Regioni1 – 155DisorderedSequence analysisAdd BLAST155
Regioni146 – 231Necessary for interaction with DST and for the recruitment of DST to hemidesmosomeBy similarityAdd BLAST86
Regioni168 – 188DisorderedSequence analysisAdd BLAST21
Regioni562 – 857DisorderedSequence analysisAdd BLAST296
Regioni568 – 1572Triple-helical regionAdd BLAST1005
Regioni907 – 927DisorderedSequence analysisAdd BLAST21
Regioni970 – 1041DisorderedSequence analysisAdd BLAST72
Regioni1289 – 1316DisorderedSequence analysisAdd BLAST28
Regioni1344 – 1394DisorderedSequence analysisAdd BLAST51
Regioni1531 – 1566DisorderedSequence analysisAdd BLAST36
Regioni1573 – 1597Nonhelical region (NC1)Add BLAST25

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1 – 16Basic and acidic residuesSequence analysisAdd BLAST16
Compositional biasi17 – 99Polar residuesSequence analysisAdd BLAST83
Compositional biasi108 – 136Polar residuesSequence analysisAdd BLAST29
Compositional biasi170 – 188Polar residuesSequence analysisAdd BLAST19
Compositional biasi819 – 839Pro residuesSequence analysisAdd BLAST21
Compositional biasi909 – 926Pro residuesSequence analysisAdd BLAST18
Compositional biasi1022 – 1036Pro residuesSequence analysisAdd BLAST15
Compositional biasi1295 – 1311Pro residuesSequence analysisAdd BLAST17
Compositional biasi1367 – 1394Polar residuesSequence analysisAdd BLAST28
Compositional biasi1535 – 1562Basic and acidic residuesSequence analysisAdd BLAST28

Keywords - Domaini

Collagen, Repeat, Signal-anchor, Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG3544, Eukaryota

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000161242

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q9N281

Identification of Orthologs from Complete Genome Data

More...
OMAi
DYNELAL

TreeFam database of animal gene trees

More...
TreeFami
TF332289

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR008160, Collagen

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01391, Collagen, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

This entry has 1 described isoform and 4 potential isoforms that are computationally mapped.Show allAlign All

Q9N281-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDVTKKNKRD GSEVTERIIT ETVSTRLTSL PPKGGTSNGY AKTGSLSGGS
60 70 80 90 100
RLEKHSLTHG SSGYINSSGS TRGNASTSSY RRAHSPASTL PNSPGSTFER
110 120 130 140 150
KIHITRHGTY EGSSSGNSSP EYPRKEFASS STRGRSQTRE SEIRVRLQSA
160 170 180 190 200
SPSTRWTELD DVKRLLKGSR SASVSPTRNS SNTLPIPKKG TVETKMVTAS
210 220 230 240 250
SQSVSGTYDA TILDANLPSH MWSSTLPAGS SMGTYHNNVT TQSSSLLNTN
260 270 280 290 300
AYSAGSVFGV PNNMTSGSST LHPGVSTCSS VFGMQNNLAP SSSTLSHSTA
310 320 330 340 350
TASTAYGMKK NLPQSPAVVS TGVSTSAACT TNVQNEDLLH KDCKFLILEK
360 370 380 390 400
DNTPAKKEME LLIMTKDSGK VFTASPASIA ATSFSDDTLK KEKQAAYTAD
410 420 430 440 450
TCLVSDANGD VKTVSTKGKA ASAEMHNYNH RGGGSGGGGG GGGGGGGGPW
460 470 480 490 500
GAAPAWCPCG SCCSWWKWLL GLLLTWLLLL GLLFGLIALA EEVRALKARV
510 520 530 540 550
AELEQSRSNV LLFKEEMQRA NKDWLQGEAP SVEAGGKLGL DGHQQEELWL
560 570 580 590 600
FVRNRLMAEQ ENGNLRGSPG PKGDMGSQGP KGDRGLPGTP GIPGVLGHPG
610 620 630 640 650
PQGPKGQKGS VGEPGMEGPM GQRGREGPMG PRGEPGPPGF GEKGDRGAAG
660 670 680 690 700
EPGVQGPPGV PGSVGPKGSG GSPGPRGPPG PMGPQGLRGE VGLPGIKGDK
710 720 730 740 750
GPLGSPGPKG DQGEKGPRGL TGEPGLRGLP GAVGEPGAKG AVGPAGPDGH
760 770 780 790 800
QGPRGEQGLT GMPGTRGPPG PSGDPGKPGF TGPQGPQGLP GTPGRPGAKG
810 820 830 840 850
EPGAPGRIMT SEGSSTITVP GPPGPPGAMG PPGPPGAPGP RGERGLAGES
860 870 880 890 900
FMGSSSSISE LLSTRSFKEP MQTCHRASFL EARVAKTTPA LSGRHCVLDT
910 920 930 940 950
CRKGVDLRGP PGPPGPPGPP DLPFRVRQDP EAPQVKAELP GKRYESIGTQ
960 970 980 990 1000
SLGLALGKSL PATSPQHRVL ETYFSGPPGP PGPPGPKGDQ GSSSLGLNLQ
1010 1020 1030 1040 1050
GPPGPRGPKG DKGGSSSSTM FMPGPPGPPG PPGPPGSISS SGREIQQYIS
1060 1070 1080 1090 1100
EYLQSDSIRS YLSGVQGPPG PPGPPGPVTT IAGETFDYSE LASRVSSYLQ
1110 1120 1130 1140 1150
TSGYSIGSSV SISTEDIVAA LQREYLRRAG GWEPWGLGLP LPELLRASEE
1160 1170 1180 1190 1200
ALVLVPSGQG RPGCGRAVAR EPCGLGGPTP ALPVLAGDDV RQYLRQYVIG
1210 1220 1230 1240 1250
DWSLQSLDYA ELSSRILSYM SSSGISIGLP GPPGPPGLPG TSYEELLSLL
1260 1270 1280 1290 1300
QGSEYRGIIG PPGPPGPPGI PGNAWSSISV EDLSSYLHTA GVSSIPGPPG
1310 1320 1330 1340 1350
PPGPPGPRGP PGVSGALATY AAENSDSFRS ELISYLTSPD VRSFIVGPPG
1360 1370 1380 1390 1400
PPGPQGPPGD SRLVSMDGSY SRDSRSSSHS ASVSRGSSYS SSMGIGGASG
1410 1420 1430 1440 1450
GSLGEAGAFG LDMGLGRGYG GAAEGGMYGG EGGPLGAGFA GGLDYNELAV
1460 1470 1480 1490 1500
RVSESLQRQG LLQGMAYTVQ GPPGQPGPQG PPGISKVFSA YSNVTEDLMD
1510 1520 1530 1540 1550
FFRSKSTSVI VFLTPCCPVR GALQDHQVGL GHPALEGTRE KKETKVTKSM
1560 1570 1580 1590
RGGEREASPS SHELPLEEQP LASVLAMAYG VHVKISPKGG SWRLTSY
Length:1,597
Mass (Da):163,069
Last modified:July 1, 2008 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i37BFB47E1FE3E547
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 4 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F6XBP8F6XBP8_CANLF
Collagen alpha-1(XVII) chain
COL17A1
1,442Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A5F4D610A0A5F4D610_CANLF
Collagen alpha-1(XVII) chain
COL17A1
1,427Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
E2QXQ6E2QXQ6_CANLF
Collagen alpha-1(XVII) chain
COL17A1
1,432Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A5F4CTZ0A0A5F4CTZ0_CANLF
Collagen alpha-1(XVII) chain
COL17A1
1,548Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti100R → G in AAC27985 (PubMed:10564722).Curated1
Sequence conflicti179N → D in AAC27985 (PubMed:10564722).Curated1
Sequence conflicti536G → EA in AAC27985 (PubMed:10564722).Curated1
Sequence conflicti623R → K in AAC27985 (PubMed:10564722).Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AAEX02015518 Genomic DNA No translation available.
AF016649 mRNA Translation: AAC27985.2

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSCAFT00000045026; ENSCAFP00000037321; ENSCAFG00000010547

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAEX02015518 Genomic DNA No translation available.
AF016649 mRNA Translation: AAC27985.2

3D structure databases

SMRiQ9N281
ModBaseiSearch...

Protein-protein interaction databases

STRINGi9612.ENSCAFP00000037321

Proteomic databases

PaxDbiQ9N281
PRIDEiQ9N281

Genome annotation databases

EnsembliENSCAFT00000045026; ENSCAFP00000037321; ENSCAFG00000010547

Organism-specific databases

VGNCiVGNC:39462, COL17A1

Phylogenomic databases

eggNOGiKOG3544, Eukaryota
GeneTreeiENSGT00940000161242
InParanoidiQ9N281
OMAiDYNELAL
TreeFamiTF332289

Gene expression databases

BgeeiENSCAFG00000010547, Expressed in keratinocyte and 48 other tissues

Family and domain databases

InterProiView protein in InterPro
IPR008160, Collagen
PfamiView protein in Pfam
PF01391, Collagen, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiCOHA1_CANLF
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9N281
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 2, 2004
Last sequence update: July 1, 2008
Last modified: September 29, 2021
This is version 115 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome
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