UniProtKB - Q9MAL9 (GIF2_ARATH)
Protein
GRF1-interacting factor 2
Gene
GIF2
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Functioni
Transcription coactivator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues (By similarity). Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation (By similarity). GIFs are involved in the positive regulation of cell proliferation of lateral organs in a functionally redundant manner.By similarity2 Publications
GO - Molecular functioni
- transcription coactivator activity Source: InterPro
GO - Biological processi
- cell population proliferation Source: GO_Central
- leaf development Source: GO_Central
- positive regulation of transcription by RNA polymerase II Source: GO_Central
Keywordsi
Molecular function | Activator |
Biological process | Transcription, Transcription regulation |
Names & Taxonomyi
Protein namesi | Recommended name: GRF1-interacting factor 2Short name: AtGIF2 Alternative name(s): Transcription coactivator GIF2 |
Gene namesi | Name:GIF2 Ordered Locus Names:At1g01160 ORF Names:F6F3_1, T25K16.15 |
Organismi | Arabidopsis thaliana (Mouse-ear cress) |
Taxonomic identifieri | 3702 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Proteomesi |
|
Organism-specific databases
Araporti | AT1G01160 |
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000419319 | 1 – 195 | GRF1-interacting factor 2Add BLAST | 195 |
Proteomic databases
PRIDEi | Q9MAL9 |
ProteomicsDBi | 220661 [Q9MAL9-1] |
Expressioni
Tissue specificityi
Predominantly expressed in shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers.1 Publication
Gene expression databases
ExpressionAtlasi | Q9MAL9, baseline and differential |
Genevisiblei | Q9MAL9, AT |
Interactioni
Subunit structurei
Interacts with GRF1.
1 PublicationBinary interactionsi
Hide detailsQ9MAL9
Protein-protein interaction databases
BioGRIDi | 24513, 23 interactors |
IntActi | Q9MAL9, 23 interactors |
Family & Domainsi
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 75 – 84 | Poly-Pro | 10 | |
Compositional biasi | 124 – 146 | Gln-richAdd BLAST | 23 |
Sequence similaritiesi
Belongs to the SS18 family.Curated
Phylogenomic databases
HOGENOMi | CLU_086253_1_0_1 |
InParanoidi | Q9MAL9 |
OMAi | GYYMQHP |
PhylomeDBi | Q9MAL9 |
Family and domain databases
InterProi | View protein in InterPro IPR007726, SS18_fam |
Pfami | View protein in Pfam PF05030, SSXT, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
This entry describes 1 produced by isoform ialternative splicing. AlignAdd to basketNote: A number of isoforms are produced. According to EST sequences.
This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All
Isoform 1 (identifier: Q9MAL9-1) [UniParc]FASTAAdd to basket
This isoform has been chosen as the sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. canonicali
10 20 30 40 50
MQQQQSPQMF PMVPSIPPAN NITTEQIQKY LDENKKLIMA IMENQNLGKL
60 70 80 90 100
AECAQYQALL QKNLMYLAAI ADAQPPPPTP GPSPSTAVAA QMATPHSGMQ
110 120 130 140 150
PPSYFMQHPQ ASPAGIFAPR GPLQFGSPLQ FQDPQQQQQI HQQAMQGHMG
160 170 180 190
IRPMGMTNNG MQHAMQQPET GLGGNVGLRG GKQDGADGQG KDDGK
Computationally mapped potential isoform sequencesi
There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basketF4HQJ3 | F4HQJ3_ARATH | GRF1-interacting factor 2 | GIF2 GRF1-interacting factor 2, At1g01160, F6F3.29 | 229 | Annotation score: |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AY102640 mRNA Translation: AAM52882.1 AC007323 Genomic DNA Translation: AAF26463.1 CP002684 Genomic DNA Translation: AEE27247.1 AF410307 mRNA Translation: AAK95293.1 AY102133 mRNA Translation: AAM26700.1 |
PIRi | H86141 |
RefSeqi | NP_563619.1, NM_099998.4 [Q9MAL9-1] |
Genome annotation databases
EnsemblPlantsi | AT1G01160.1; AT1G01160.1; AT1G01160 [Q9MAL9-1] |
GeneIDi | 839278 |
Gramenei | AT1G01160.1; AT1G01160.1; AT1G01160 [Q9MAL9-1] |
KEGGi | ath:AT1G01160 |
Keywords - Coding sequence diversityi
Alternative splicingSimilar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AY102640 mRNA Translation: AAM52882.1 AC007323 Genomic DNA Translation: AAF26463.1 CP002684 Genomic DNA Translation: AEE27247.1 AF410307 mRNA Translation: AAK95293.1 AY102133 mRNA Translation: AAM26700.1 |
PIRi | H86141 |
RefSeqi | NP_563619.1, NM_099998.4 [Q9MAL9-1] |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
BioGRIDi | 24513, 23 interactors |
IntActi | Q9MAL9, 23 interactors |
Proteomic databases
PRIDEi | Q9MAL9 |
ProteomicsDBi | 220661 [Q9MAL9-1] |
Genome annotation databases
EnsemblPlantsi | AT1G01160.1; AT1G01160.1; AT1G01160 [Q9MAL9-1] |
GeneIDi | 839278 |
Gramenei | AT1G01160.1; AT1G01160.1; AT1G01160 [Q9MAL9-1] |
KEGGi | ath:AT1G01160 |
Organism-specific databases
Araporti | AT1G01160 |
Phylogenomic databases
HOGENOMi | CLU_086253_1_0_1 |
InParanoidi | Q9MAL9 |
OMAi | GYYMQHP |
PhylomeDBi | Q9MAL9 |
Miscellaneous databases
PROi | PR:Q9MAL9 |
Gene expression databases
ExpressionAtlasi | Q9MAL9, baseline and differential |
Genevisiblei | Q9MAL9, AT |
Family and domain databases
InterProi | View protein in InterPro IPR007726, SS18_fam |
Pfami | View protein in Pfam PF05030, SSXT, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | GIF2_ARATH | |
Accessioni | Q9MAL9Primary (citable) accession number: Q9MAL9 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | October 3, 2012 |
Last sequence update: | October 1, 2000 | |
Last modified: | April 7, 2021 | |
This is version 102 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Plant Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Arabidopsis thaliana
Arabidopsis thaliana: entries and gene names - SIMILARITY comments
Index of protein domains and families