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Protein

40S ribosomal protein S3-2

Gene

RPS3B

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • DNA repair Source: GO_Central
  • positive regulation of DNA repair Source: GO_Central
  • response to salt stress Source: TAIR
  • translation Source: InterPro

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-ATH-72702 Ribosomal scanning and start codon recognition
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S3-2
Gene namesi
Name:RPS3B
Ordered Locus Names:At3g53870
ORF Names:F5K20_170
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G53870
TAIRilocus:2084490 AT3G53870

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002501781 – 24940S ribosomal protein S3-2Add BLAST249

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei212PhosphoserineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ9M339
PRIDEiQ9M339

PTM databases

iPTMnetiQ9M339

Expressioni

Gene expression databases

ExpressionAtlasiQ9M339 baseline and differential
GenevisibleiQ9M339 AT

Interactioni

Protein-protein interaction databases

BioGridi9871, 6 interactors
IntActiQ9M339, 1 interactor
STRINGi3702.AT3G53870.1

Structurei

3D structure databases

ProteinModelPortaliQ9M339
SMRiQ9M339
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini21 – 92KH type-2PROSITE-ProRule annotationAdd BLAST72

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3181 Eukaryota
COG0092 LUCA
HOGENOMiHOG000210611
InParanoidiQ9M339
KOiK02985
OMAiAVRHVLM
OrthoDBiEOG09360K1B
PhylomeDBiQ9M339

Family and domain databases

Gene3Di3.30.1140.32, 1 hit
3.30.300.20, 1 hit
InterProiView protein in InterPro
IPR015946 KH_dom-like_a/b
IPR004044 KH_dom_type_2
IPR009019 KH_sf_prok-type
IPR001351 Ribosomal_S3_C
IPR036419 Ribosomal_S3_C_sf
IPR005703 Ribosomal_S3_euk/arc
PfamiView protein in Pfam
PF07650 KH_2, 1 hit
PF00189 Ribosomal_S3_C, 1 hit
SUPFAMiSSF54814 SSF54814, 1 hit
SSF54821 SSF54821, 1 hit
TIGRFAMsiTIGR01008 uS3_euk_arch, 1 hit
PROSITEiView protein in PROSITE
PS50823 KH_TYPE_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q9M339-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTTQISKKRK FVADGVFYAE LNEVLTRELA EDGYSGVEVR VTPMRTEIII
60 70 80 90 100
RATRTQNVLG EKGRRIRELT SLVQKRFKFP VDSVELYAEK VNNRGLCAIA
110 120 130 140 150
QAESLRYKLL GGLAVRRACY GVLRFVMESG AKGCEVIVSG KLRAARAKSM
160 170 180 190 200
KFKDGYMVSS GQPTKEYIDS AVRHVLLRQG VLGIKVKVML DWDPKGISGP
210 220 230 240
KTPLPDVVII HSPKEEEAIY APAQVAAPAA LVADAPLTAV DYPAMIPVA
Length:249
Mass (Da):27,349
Last modified:October 1, 2000 - v1
Checksum:iE28DB7D18C07F9EC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL132960 Genomic DNA Translation: CAB88349.1
CP002686 Genomic DNA Translation: AEE79152.1
AF428405 mRNA Translation: AAL16173.1
AY035022 mRNA Translation: AAK59527.1
AY059090 mRNA Translation: AAL15196.1
AY088808 mRNA Translation: AAM67118.1
PIRiT45927
RefSeqiNP_190955.1, NM_115247.5
UniGeneiAt.24124

Genome annotation databases

EnsemblPlantsiAT3G53870.1; AT3G53870.1; AT3G53870
GeneIDi824554
GrameneiAT3G53870.1; AT3G53870.1; AT3G53870
KEGGiath:AT3G53870

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL132960 Genomic DNA Translation: CAB88349.1
CP002686 Genomic DNA Translation: AEE79152.1
AF428405 mRNA Translation: AAL16173.1
AY035022 mRNA Translation: AAK59527.1
AY059090 mRNA Translation: AAL15196.1
AY088808 mRNA Translation: AAM67118.1
PIRiT45927
RefSeqiNP_190955.1, NM_115247.5
UniGeneiAt.24124

3D structure databases

ProteinModelPortaliQ9M339
SMRiQ9M339
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi9871, 6 interactors
IntActiQ9M339, 1 interactor
STRINGi3702.AT3G53870.1

PTM databases

iPTMnetiQ9M339

Proteomic databases

PaxDbiQ9M339
PRIDEiQ9M339

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G53870.1; AT3G53870.1; AT3G53870
GeneIDi824554
GrameneiAT3G53870.1; AT3G53870.1; AT3G53870
KEGGiath:AT3G53870

Organism-specific databases

AraportiAT3G53870
TAIRilocus:2084490 AT3G53870

Phylogenomic databases

eggNOGiKOG3181 Eukaryota
COG0092 LUCA
HOGENOMiHOG000210611
InParanoidiQ9M339
KOiK02985
OMAiAVRHVLM
OrthoDBiEOG09360K1B
PhylomeDBiQ9M339

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-ATH-72702 Ribosomal scanning and start codon recognition
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Miscellaneous databases

PROiPR:Q9M339

Gene expression databases

ExpressionAtlasiQ9M339 baseline and differential
GenevisibleiQ9M339 AT

Family and domain databases

Gene3Di3.30.1140.32, 1 hit
3.30.300.20, 1 hit
InterProiView protein in InterPro
IPR015946 KH_dom-like_a/b
IPR004044 KH_dom_type_2
IPR009019 KH_sf_prok-type
IPR001351 Ribosomal_S3_C
IPR036419 Ribosomal_S3_C_sf
IPR005703 Ribosomal_S3_euk/arc
PfamiView protein in Pfam
PF07650 KH_2, 1 hit
PF00189 Ribosomal_S3_C, 1 hit
SUPFAMiSSF54814 SSF54814, 1 hit
SSF54821 SSF54821, 1 hit
TIGRFAMsiTIGR01008 uS3_euk_arch, 1 hit
PROSITEiView protein in PROSITE
PS50823 KH_TYPE_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRS32_ARATH
AccessioniPrimary (citable) accession number: Q9M339
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 19, 2006
Last sequence update: October 1, 2000
Last modified: November 7, 2018
This is version 121 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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