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Entry version 138 (16 Oct 2019)
Sequence version 1 (01 Oct 2000)
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Protein
Submitted name:

At3g57220

Gene

F28O9.70

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionTransferaseImported

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
ARA:AT3G57220-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
At3g57220Imported
Submitted name:
Glycosyl transferase family 4 proteinImported
Submitted name:
UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate transferase-like proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:F28O9.70Imported
Synonyms:AT3G57220.1Imported
Ordered Locus Names:At3g57220Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 3

Organism-specific databases

Arabidopsis Information Portal

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Araporti
AT3G57220

The Arabidopsis Information Resource

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TAIRi
locus:2082603 AT3G57220

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei44 – 64HelicalSequence analysisAdd BLAST21
Transmembranei76 – 98HelicalSequence analysisAdd BLAST23
Transmembranei126 – 145HelicalSequence analysisAdd BLAST20
Transmembranei152 – 173HelicalSequence analysisAdd BLAST22
Transmembranei185 – 207HelicalSequence analysisAdd BLAST23
Transmembranei228 – 246HelicalSequence analysisAdd BLAST19
Transmembranei252 – 272HelicalSequence analysisAdd BLAST21
Transmembranei284 – 305HelicalSequence analysisAdd BLAST22
Transmembranei317 – 341HelicalSequence analysisAdd BLAST25
Transmembranei399 – 421HelicalSequence analysisAdd BLAST23

Keywords - Cellular componenti

Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PRoteomics IDEntifications database

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PRIDEi
Q9M2M5

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

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iPTMneti
Q9M2M5

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q9M2M5 baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

Protein interaction database and analysis system

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IntActi
Q9M2M5, 24 interactors

STRING: functional protein association networks

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STRINGi
3702.AT3G57220.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
Q9M2M5

Database of comparative protein structure models

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ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 29DisorderedSequence analysisAdd BLAST29

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
KOG2788 Eukaryota
COG0472 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

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HOGENOMi
HOG000163915

KEGG Orthology (KO)

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KOi
K01001

Identification of Orthologs from Complete Genome Data

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OMAi
LAIVFQY

Database of Orthologous Groups

More...
OrthoDBi
1079130at2759

Family and domain databases

Conserved Domains Database

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CDDi
cd06855 GT_GPT_euk, 1 hit

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR000715 Glycosyl_transferase_4
IPR033895 GPT

The PANTHER Classification System

More...
PANTHERi
PTHR10571 PTHR10571, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00953 Glycos_transf_4, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9M2M5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTARKRTPSV SNSEKLALPE PASSPTVQKT SVSGEDFQLA PPKLGVIFVI
60 70 80 90 100
SSLLCSLYLY LLCFHYNVDN ELKRPILINA GLSLVGFFVT LKLIPVAARY
110 120 130 140 150
VLRRNMFGFD INKRGTPQGE VRVPESLGIV VGIVFLIVAI VFQFFNFTED
160 170 180 190 200
SVWLVEYNAA LASICFMILL GFVDDVLDVP WRVKLLLPSF ATLPLLMAYA
210 220 230 240 250
GHTTIVIPKP LVSYIGLEVF DLGRIYKLYM ALLAVFCTNS INIHAGLNGL
260 270 280 290 300
EIGQTVVIAA AILIHNVMQI GASVDTEYHQ AHAFSIYLTQ PLMATSLAML
310 320 330 340 350
AYNWYPSAVF VGDTYTVFAG MTMAVVGILG HFSETLLIFF LPQVLNFLLS
360 370 380 390 400
LPQLAGIVKC PRHRLPKYDP ATGLLTGTKD GTLVNVYLRI FGRKTEKSLC
410 420
IHLLVFQALA CAFCFMLRHF LAGWYK
Length:426
Mass (Da):47,175
Last modified:October 1, 2000 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iF33D8E284818DFA1
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AY088931 mRNA Translation: AAM67237.1
BT029005 mRNA Translation: ABI93914.1
CP002686 Genomic DNA Translation: AEE79628.1
KY906095 mRNA Translation: ARJ31459.1
AK175168 mRNA Translation: BAD42931.1
AL137080 Genomic DNA Translation: CAB68128.1

Protein sequence database of the Protein Information Resource

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PIRi
T45800

NCBI Reference Sequences

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RefSeqi
NP_191281.1, NM_115582.3

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT3G57220.1; AT3G57220.1; AT3G57220

Database of genes from NCBI RefSeq genomes

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GeneIDi
824889

Gramene; a comparative resource for plants

More...
Gramenei
AT3G57220.1; AT3G57220.1; AT3G57220

KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGGi
ath:AT3G57220

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY088931 mRNA Translation: AAM67237.1
BT029005 mRNA Translation: ABI93914.1
CP002686 Genomic DNA Translation: AEE79628.1
KY906095 mRNA Translation: ARJ31459.1
AK175168 mRNA Translation: BAD42931.1
AL137080 Genomic DNA Translation: CAB68128.1
PIRiT45800
RefSeqiNP_191281.1, NM_115582.3

3D structure databases

SMRiQ9M2M5
ModBaseiSearch...

Protein-protein interaction databases

IntActiQ9M2M5, 24 interactors
STRINGi3702.AT3G57220.1

PTM databases

iPTMnetiQ9M2M5

Proteomic databases

PRIDEiQ9M2M5

Genome annotation databases

EnsemblPlantsiAT3G57220.1; AT3G57220.1; AT3G57220
GeneIDi824889
GrameneiAT3G57220.1; AT3G57220.1; AT3G57220
KEGGiath:AT3G57220

Organism-specific databases

AraportiAT3G57220
TAIRilocus:2082603 AT3G57220

Phylogenomic databases

eggNOGiKOG2788 Eukaryota
COG0472 LUCA
HOGENOMiHOG000163915
KOiK01001
OMAiLAIVFQY
OrthoDBi1079130at2759

Enzyme and pathway databases

BioCyciARA:AT3G57220-MONOMER

Gene expression databases

ExpressionAtlasiQ9M2M5 baseline and differential

Family and domain databases

CDDicd06855 GT_GPT_euk, 1 hit
InterProiView protein in InterPro
IPR000715 Glycosyl_transferase_4
IPR033895 GPT
PANTHERiPTHR10571 PTHR10571, 1 hit
PfamiView protein in Pfam
PF00953 Glycos_transf_4, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ9M2M5_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9M2M5
Secondary accession number(s): A0A178VAN3
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: October 16, 2019
This is version 138 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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