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Protein

Pentatricopeptide repeat-containing protein At3g63370, chloroplastic

Gene

PCMP-H83

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Involved in RNA editing event in chloroplasts. Required for the editing of a single site in rps14 transcript.1 Publication

GO - Molecular functioni

GO - Biological processi

  • chloroplast RNA processing Source: TAIR
  • mRNA processing Source: UniProtKB-KW
  • RNA modification Source: GO_Central

Keywordsi

Biological processmRNA processing

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At3g63370, chloroplasticCurated
Alternative name(s):
Protein ORGANELLE TRANSCRIPT PROCESSING 861 Publication
Gene namesi
Name:PCMP-H83
Synonyms:OTP861 Publication
Ordered Locus Names:At3g63370
ORF Names:F16M2_220
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G63370
TAIRilocus:2077279 AT3G63370

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

Pathology & Biotechi

Disruption phenotypei

No visible phenotype under normal growth conditions.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 64ChloroplastSequence analysisAdd BLAST64
ChainiPRO_000035615565 – 960Pentatricopeptide repeat-containing protein At3g63370, chloroplasticSequence analysisAdd BLAST896

Proteomic databases

PaxDbiQ9M1V3
PRIDEiQ9M1V3

Expressioni

Gene expression databases

ExpressionAtlasiQ9M1V3 baseline and differential

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G63370.1

Structurei

3D structure databases

ProteinModelPortaliQ9M1V3
SMRiQ9M1V3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati79 – 109PPR 1Add BLAST31
Repeati115 – 145PPR 2Add BLAST31
Repeati146 – 180PPR 3Add BLAST35
Repeati181 – 215PPR 4Add BLAST35
Repeati216 – 246PPR 5Add BLAST31
Repeati248 – 282PPR 6Add BLAST35
Repeati283 – 317PPR 7Add BLAST35
Repeati319 – 349PPR 8Add BLAST31
Repeati350 – 384PPR 9Add BLAST35
Repeati385 – 419PPR 10Add BLAST35
Repeati420 – 450PPR 11Add BLAST31
Repeati451 – 485PPR 12Add BLAST35
Repeati486 – 516PPR 13Add BLAST31
Repeati520 – 550PPR 14Add BLAST31
Repeati551 – 585PPR 15Add BLAST35
Repeati586 – 620PPR 16Add BLAST35
Repeati621 – 651PPR 17Add BLAST31
Repeati652 – 686PPR 18Add BLAST35
Repeati687 – 717PPR 19Add BLAST31
Repeati723 – 753PPR 20Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni758 – 833Type E motifAdd BLAST76
Regioni834 – 864Type E(+) motifAdd BLAST31
Regioni865 – 960Type DYW motifAdd BLAST96

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiQ9M1V3
OrthoDBiEOG0936030A
PhylomeDBiQ9M1V3

Family and domain databases

Gene3Di1.25.40.10, 5 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 10 hits
PF13041 PPR_2, 1 hit
TIGRFAMsiTIGR00756 PPR, 6 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 17 hits

Sequence (1+)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q9M1V3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEYAVTNMRL LSNMMYSASA ISFPRVRLHC SIPTEPSCRR NPFRQSNQPV
60 70 80 90 100
QVPSPKLACF DGVLTEAFQR LDVSENNSPV EAFAYVLELC GKRRAVSQGR
110 120 130 140 150
QLHSRIFKTF PSFELDFLAG KLVFMYGKCG SLDDAEKVFD EMPDRTAFAW
160 170 180 190 200
NTMIGAYVSN GEPASALALY WNMRVEGVPL GLSSFPALLK ACAKLRDIRS
210 220 230 240 250
GSELHSLLVK LGYHSTGFIV NALVSMYAKN DDLSAARRLF DGFQEKGDAV
260 270 280 290 300
LWNSILSSYS TSGKSLETLE LFREMHMTGP APNSYTIVSA LTACDGFSYA
310 320 330 340 350
KLGKEIHASV LKSSTHSSEL YVCNALIAMY TRCGKMPQAE RILRQMNNAD
360 370 380 390 400
VVTWNSLIKG YVQNLMYKEA LEFFSDMIAA GHKSDEVSMT SIIAASGRLS
410 420 430 440 450
NLLAGMELHA YVIKHGWDSN LQVGNTLIDM YSKCNLTCYM GRAFLRMHDK
460 470 480 490 500
DLISWTTVIA GYAQNDCHVE ALELFRDVAK KRMEIDEMIL GSILRASSVL
510 520 530 540 550
KSMLIVKEIH CHILRKGLLD TVIQNELVDV YGKCRNMGYA TRVFESIKGK
560 570 580 590 600
DVVSWTSMIS SSALNGNESE AVELFRRMVE TGLSADSVAL LCILSAAASL
610 620 630 640 650
SALNKGREIH CYLLRKGFCL EGSIAVAVVD MYACCGDLQS AKAVFDRIER
660 670 680 690 700
KGLLQYTSMI NAYGMHGCGK AAVELFDKMR HENVSPDHIS FLALLYACSH
710 720 730 740 750
AGLLDEGRGF LKIMEHEYEL EPWPEHYVCL VDMLGRANCV VEAFEFVKMM
760 770 780 790 800
KTEPTAEVWC ALLAACRSHS EKEIGEIAAQ RLLELEPKNP GNLVLVSNVF
810 820 830 840 850
AEQGRWNDVE KVRAKMKASG MEKHPGCSWI EMDGKVHKFT ARDKSHPESK
860 870 880 890 900
EIYEKLSEVT RKLEREVGYV ADTKFVLHNV DEGEKVQMLH GHSERIAIAY
910 920 930 940 950
GLLRTPDRAC LRITKNLRVC RDCHTFCKLV SKLFRRDIVM RDANRFHHFE
960
SGLCSCGDSW
Length:960
Mass (Da):107,520
Last modified:December 16, 2008 - v2
Checksum:i135FEF513609DBB7
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1I9LSS6A0A1I9LSS6_ARATH
Tetratricopeptide repeat (TPR)-like...
OTP86 MAA21.7, At3g63370
884Annotation score:

Sequence cautioni

The sequence CAB86438 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL138648 Genomic DNA Translation: CAB86438.1 Sequence problems.
CP002686 Genomic DNA Translation: AEE80472.2
PIRiT48126
RefSeqiNP_001319827.1, NM_001340211.1
UniGeneiAt.54049

Genome annotation databases

EnsemblPlantsiAT3G63370.1; AT3G63370.1; AT3G63370
GeneIDi825512
GrameneiAT3G63370.1; AT3G63370.1; AT3G63370
KEGGiath:AT3G63370

Similar proteinsi

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL138648 Genomic DNA Translation: CAB86438.1 Sequence problems.
CP002686 Genomic DNA Translation: AEE80472.2
PIRiT48126
RefSeqiNP_001319827.1, NM_001340211.1
UniGeneiAt.54049

3D structure databases

ProteinModelPortaliQ9M1V3
SMRiQ9M1V3
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G63370.1

Proteomic databases

PaxDbiQ9M1V3
PRIDEiQ9M1V3

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G63370.1; AT3G63370.1; AT3G63370
GeneIDi825512
GrameneiAT3G63370.1; AT3G63370.1; AT3G63370
KEGGiath:AT3G63370

Organism-specific databases

AraportiAT3G63370
TAIRilocus:2077279 AT3G63370

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiQ9M1V3
OrthoDBiEOG0936030A
PhylomeDBiQ9M1V3

Miscellaneous databases

PROiPR:Q9M1V3

Gene expression databases

ExpressionAtlasiQ9M1V3 baseline and differential

Family and domain databases

Gene3Di1.25.40.10, 5 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 10 hits
PF13041 PPR_2, 1 hit
TIGRFAMsiTIGR00756 PPR, 6 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 17 hits
ProtoNetiSearch...

Entry informationi

Entry nameiPP296_ARATH
AccessioniPrimary (citable) accession number: Q9M1V3
Secondary accession number(s): F4J0Z5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: December 16, 2008
Last modified: May 23, 2018
This is version 101 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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