Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

UniProtKB - Q9LYI7 (Q9LYI7_ARATH)

Entry version 134 (07 Apr 2021)
Sequence version 1 (01 Oct 2000)
Previous versions | rss
Add a publicationFeedback
Protein
Submitted name:

At5g11860

Gene

SCP1-like small phosphatase 5

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
At5g11860Imported
Submitted name:
SCP1-like small phosphatase 5Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:SCP1-like small phosphatase 5Imported
Synonyms:SSP5Imported
Ordered Locus Names:At5g11860Imported
ORF Names:F14F18.30Imported, F14F18_30Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

Organism-specific databases

Arabidopsis Information Portal

More...Araporti		AT5G11860

The Arabidopsis Information Resource

More...TAIRi		locus:2143019, AT5G11860

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PRoteomics IDEntifications database

More...PRIDEi		Q9LYI7

ProteomicsDB: a multi-organism proteome resource

More...ProteomicsDBi		183054

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...ExpressionAtlasi		Q9LYI7, baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		3702.AT5G11860.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		Q9LYI7

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini107 – 266FCP1 homologyInterPro annotationAdd BLAST160

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG1605, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_020262_4_1_1

Identification of Orthologs from Complete Genome Data

More...OMAi		ARYRIRD

Database of Orthologous Groups

More...OrthoDBi		1176152at2759

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		3.40.50.1000, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR011948, Dullard_phosphatase
IPR004274, FCP1_dom
IPR036412, HAD-like_sf
IPR023214, HAD_sf

Pfam protein domain database

More...Pfami		View protein in Pfam
PF03031, NIF, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00577, CPDc, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF56784, SSF56784, 1 hit

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR02251, HIF-SF_euk, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50969, FCP1, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q9LYI7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEDDDSPSSR DLDAQNPYDR LLALDTSTVD PNCNLDSVSA IYLAMKSSKL 
        60         70         80         90        100
ECVDERGQDS LITSVCMEDE EDEELDEFDP YLFIKNLPNL SSVVPTFRPV 
       110        120        130        140        150
LLPKQTRSCP PISLVLDLDE TLVHSTLEPC GEVDFTFPVN FNEEEHMVYV 
       160        170        180        190        200
RCRPHLKEFM ERVSRLFEII IFTASQSIYA EQLLNVLDPK RKLFRHRVYR 
       210        220        230        240        250
DSCVFFDGNY LKDLSVLGRD LSRVIIVDNS PQAFGFQVEN GVPIESWFND 
       260        270        280        290        300
PSDKELLHLL PFLESLIGVE DVRPMIAKKF NLREKIDAAV AAPEYPAEAG 

DPFER
Length:305
Mass (Da):34,847
Last modified:October 1, 2000 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i5C1FA367238525A8
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AY085441 mRNA Translation: AAM62668.1
BT020406 mRNA Translation: AAV97797.1
CP002688 Genomic DNA Translation: AED91728.1
CP002688 Genomic DNA Translation: AED91729.1
CP002688 Genomic DNA Translation: AED91730.1
CP002688 Genomic DNA Translation: AED91731.1
CP002688 Genomic DNA Translation: ANM69567.1
AL163812 Genomic DNA Translation: CAB87659.1

Protein sequence database of the Protein Information Resource

More...PIRi		T48545

NCBI Reference Sequences

More...RefSeqi		NP_001078572.1, NM_001085103.1
NP_001318546.1, NM_001343218.1
NP_196747.1, NM_121224.4
NP_850809.1, NM_180478.1
NP_974767.1, NM_203038.3

Genome annotation databases

Ensembl plant genome annotation project

More...EnsemblPlantsi		AT5G11860.1; AT5G11860.1; AT5G11860
AT5G11860.2; AT5G11860.2; AT5G11860
AT5G11860.3; AT5G11860.3; AT5G11860
AT5G11860.4; AT5G11860.4; AT5G11860
AT5G11860.5; AT5G11860.5; AT5G11860

Database of genes from NCBI RefSeq genomes

More...GeneIDi		831059

Gramene; a comparative resource for plants

More...Gramenei		AT5G11860.1; AT5G11860.1; AT5G11860
AT5G11860.2; AT5G11860.2; AT5G11860
AT5G11860.3; AT5G11860.3; AT5G11860
AT5G11860.4; AT5G11860.4; AT5G11860
AT5G11860.5; AT5G11860.5; AT5G11860

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		ath:AT5G11860

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY085441 mRNA Translation: AAM62668.1
BT020406 mRNA Translation: AAV97797.1
CP002688 Genomic DNA Translation: AED91728.1
CP002688 Genomic DNA Translation: AED91729.1
CP002688 Genomic DNA Translation: AED91730.1
CP002688 Genomic DNA Translation: AED91731.1
CP002688 Genomic DNA Translation: ANM69567.1
AL163812 Genomic DNA Translation: CAB87659.1
PIRiT48545
RefSeqiNP_001078572.1, NM_001085103.1
NP_001318546.1, NM_001343218.1
NP_196747.1, NM_121224.4
NP_850809.1, NM_180478.1
NP_974767.1, NM_203038.3

3D structure databases

SMRiQ9LYI7
ModBaseiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G11860.1

Proteomic databases

PRIDEiQ9LYI7
ProteomicsDBi183054

Protocols and materials databases

The DNASU plasmid repository

More...DNASUi		831059

Genome annotation databases

EnsemblPlantsiAT5G11860.1; AT5G11860.1; AT5G11860
AT5G11860.2; AT5G11860.2; AT5G11860
AT5G11860.3; AT5G11860.3; AT5G11860
AT5G11860.4; AT5G11860.4; AT5G11860
AT5G11860.5; AT5G11860.5; AT5G11860
GeneIDi831059
GrameneiAT5G11860.1; AT5G11860.1; AT5G11860
AT5G11860.2; AT5G11860.2; AT5G11860
AT5G11860.3; AT5G11860.3; AT5G11860
AT5G11860.4; AT5G11860.4; AT5G11860
AT5G11860.5; AT5G11860.5; AT5G11860
KEGGiath:AT5G11860

Organism-specific databases

AraportiAT5G11860
TAIRilocus:2143019, AT5G11860

Phylogenomic databases

eggNOGiKOG1605, Eukaryota
HOGENOMiCLU_020262_4_1_1
OMAiARYRIRD
OrthoDBi1176152at2759

Gene expression databases

ExpressionAtlasiQ9LYI7, baseline and differential

Family and domain databases

Gene3Di3.40.50.1000, 1 hit
InterProiView protein in InterPro
IPR011948, Dullard_phosphatase
IPR004274, FCP1_dom
IPR036412, HAD-like_sf
IPR023214, HAD_sf
PfamiView protein in Pfam
PF03031, NIF, 1 hit
SMARTiView protein in SMART
SM00577, CPDc, 1 hit
SUPFAMiSSF56784, SSF56784, 1 hit
TIGRFAMsiTIGR02251, HIF-SF_euk, 1 hit
PROSITEiView protein in PROSITE
PS50969, FCP1, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ9LYI7_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q9LYI7
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: April 7, 2021
This is version 134 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again