Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Putative pentatricopeptide repeat-containing protein At3g23330

Gene

PCMP-H32

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Putative pentatricopeptide repeat-containing protein At3g23330
Gene namesi
Name:PCMP-H32
Ordered Locus Names:At3g23330
ORF Names:MLM24.6
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G23330
TAIRilocus:2090910 AT3G23330

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003561101 – 715Putative pentatricopeptide repeat-containing protein At3g23330Add BLAST715

Proteomic databases

PaxDbiQ9LW63
PRIDEiQ9LW63

Expressioni

Gene expression databases

ExpressionAtlasiQ9LW63 baseline and differential
GenevisibleiQ9LW63 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G23330.1

Structurei

3D structure databases

ProteinModelPortaliQ9LW63
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati38 – 68PPR 1Add BLAST31
Repeati69 – 103PPR 2Add BLAST35
Repeati104 – 138PPR 3Add BLAST35
Repeati139 – 172PPR 4Add BLAST34
Repeati206 – 240PPR 5Add BLAST35
Repeati241 – 275PPR 6Add BLAST35
Repeati276 – 306PPR 7Add BLAST31
Repeati307 – 341PPR 8Add BLAST35
Repeati342 – 376PPR 9Add BLAST35
Repeati377 – 407PPR 10Add BLAST31
Repeati408 – 442PPR 11Add BLAST35
Repeati443 – 473PPR 12Add BLAST31
Repeati479 – 509PPR 13Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni514 – 589Type E motifAdd BLAST76
Regioni590 – 620Type E(+) motifAdd BLAST31
Regioni621 – 715Type DYW motifAdd BLAST95

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiQ9LW63
OMAiMGAYVLM
OrthoDBiEOG093605I3
PhylomeDBiQ9LW63

Family and domain databases

Gene3Di1.25.40.10, 5 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 2 hits
PF13041 PPR_2, 3 hits
SUPFAMiSSF48452 SSF48452, 2 hits
TIGRFAMsiTIGR00756 PPR, 3 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 14 hits

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q9LW63-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSSSKALIKT LIKNPTRIKS KSQAKQLHAQ FIRTQSLSHT SASIVISIYT
60 70 80 90 100
NLKLLHEALL LFKTLKSPPV LAWKSVIRCF TDQSLFSKAL ASFVEMRASG
110 120 130 140 150
RCPDHNVFPS VLKSCTMMMD LRFGESVHGF IVRLGMDCDL YTGNALMNMY
160 170 180 190 200
AKLLGMGSKI SVGNVFDEMP QRTSNSGDED VKAETCIMPF GIDSVRRVFE
210 220 230 240 250
VMPRKDVVSY NTIIAGYAQS GMYEDALRMV REMGTTDLKP DSFTLSSVLP
260 270 280 290 300
IFSEYVDVIK GKEIHGYVIR KGIDSDVYIG SSLVDMYAKS ARIEDSERVF
310 320 330 340 350
SRLYCRDGIS WNSLVAGYVQ NGRYNEALRL FRQMVTAKVK PGAVAFSSVI
360 370 380 390 400
PACAHLATLH LGKQLHGYVL RGGFGSNIFI ASALVDMYSK CGNIKAARKI
410 420 430 440 450
FDRMNVLDEV SWTAIIMGHA LHGHGHEAVS LFEEMKRQGV KPNQVAFVAV
460 470 480 490 500
LTACSHVGLV DEAWGYFNSM TKVYGLNQEL EHYAAVADLL GRAGKLEEAY
510 520 530 540 550
NFISKMCVEP TGSVWSTLLS SCSVHKNLEL AEKVAEKIFT VDSENMGAYV
560 570 580 590 600
LMCNMYASNG RWKEMAKLRL RMRKKGLRKK PACSWIEMKN KTHGFVSGDR
610 620 630 640 650
SHPSMDKINE FLKAVMEQME KEGYVADTSG VLHDVDEEHK RELLFGHSER
660 670 680 690 700
LAVAFGIINT EPGTTIRVTK NIRICTDCHV AIKFISKITE REIIVRDNSR
710
FHHFNRGNCS CGDYW
Length:715
Mass (Da):80,059
Last modified:October 1, 2000 - v1
Checksum:iF94A1BCA3DFFA0F2
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1I9LMC5A0A1I9LMC5_ARATH
Tetratricopeptide repeat (TPR)-like...
At3g23330
606Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB015474 Genomic DNA Translation: BAB02277.1
CP002686 Genomic DNA Translation: AEE76753.1
RefSeqiNP_188975.3, NM_113236.4

Genome annotation databases

EnsemblPlantsiAT3G23330.1; AT3G23330.1; AT3G23330
GeneIDi821914
GrameneiAT3G23330.1; AT3G23330.1; AT3G23330
KEGGiath:AT3G23330

Similar proteinsi

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB015474 Genomic DNA Translation: BAB02277.1
CP002686 Genomic DNA Translation: AEE76753.1
RefSeqiNP_188975.3, NM_113236.4

3D structure databases

ProteinModelPortaliQ9LW63
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G23330.1

Proteomic databases

PaxDbiQ9LW63
PRIDEiQ9LW63

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G23330.1; AT3G23330.1; AT3G23330
GeneIDi821914
GrameneiAT3G23330.1; AT3G23330.1; AT3G23330
KEGGiath:AT3G23330

Organism-specific databases

AraportiAT3G23330
TAIRilocus:2090910 AT3G23330

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiQ9LW63
OMAiMGAYVLM
OrthoDBiEOG093605I3
PhylomeDBiQ9LW63

Miscellaneous databases

PROiPR:Q9LW63

Gene expression databases

ExpressionAtlasiQ9LW63 baseline and differential
GenevisibleiQ9LW63 AT

Family and domain databases

Gene3Di1.25.40.10, 5 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 2 hits
PF13041 PPR_2, 3 hits
SUPFAMiSSF48452 SSF48452, 2 hits
TIGRFAMsiTIGR00756 PPR, 3 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 14 hits
ProtoNetiSearch...

Entry informationi

Entry nameiPP251_ARATH
AccessioniPrimary (citable) accession number: Q9LW63
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: October 1, 2000
Last modified: May 23, 2018
This is version 95 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again