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Protein

Pentatricopeptide repeat-containing protein At3g26782, mitochondrial

Gene

PCMP-H34

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At3g26782, mitochondrial
Gene namesi
Name:PCMP-H34
Ordered Locus Names:At3g26782
ORF Names:MDJ14.8
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G26782
TAIRilocus:4010713776 AT3G26782

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 24MitochondrionSequence analysisAdd BLAST24
ChainiPRO_000035611725 – 659Pentatricopeptide repeat-containing protein At3g26782, mitochondrialAdd BLAST635

Proteomic databases

PaxDbiQ9LW32

Expressioni

Gene expression databases

ExpressionAtlasiQ9LW32 baseline and differential
GenevisibleiQ9LW32 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G26782.1

Structurei

3D structure databases

ProteinModelPortaliQ9LW32
SMRiQ9LW32
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati40 – 74PPR 1Add BLAST35
Repeati75 – 109PPR 2Add BLAST35
Repeati110 – 144PPR 3Add BLAST35
Repeati145 – 171PPR 4Add BLAST27
Repeati182 – 216PPR 5Add BLAST35
Repeati217 – 249PPR 6Add BLAST33
Repeati250 – 284PPR 7Add BLAST35
Repeati286 – 320PPR 8Add BLAST35
Repeati321 – 351PPR 9Add BLAST31
Repeati352 – 386PPR 10Add BLAST35
Repeati387 – 422PPR 11Add BLAST36
Repeati423 – 453PPR 12Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni458 – 533Type E motifAdd BLAST76
Regioni534 – 564Type E(+) motifAdd BLAST31
Regioni565 – 659Type DYW motifAdd BLAST95

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiQ9LW32
OMAiEAGMWKD
OrthoDBiEOG093606KR
PhylomeDBiQ9LW32

Family and domain databases

Gene3Di1.25.40.10, 3 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 4 hits
PF12854 PPR_1, 1 hit
PF13041 PPR_2, 2 hits
TIGRFAMsiTIGR00756 PPR, 3 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 10 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9LW32-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKVRSKKALF CSVSRLLHTE RHTERQNLTT LFNRYVDKTD VFSWNSVIAD
60 70 80 90 100
LARSGDSAEA LLAFSSMRKL SLYPTRSSFP CAIKACSSLF DIFSGKQTHQ
110 120 130 140 150
QAFVFGYQSD IFVSSALIVM YSTCGKLEDA RKVFDEIPKR NIVSWTSMIR
160 170 180 190 200
GYDLNGNALD AVSLFKDLLV DENDDDDAMF LDSMGLVSVI SACSRVPAKG
210 220 230 240 250
LTESIHSFVI KRGFDRGVSV GNTLLDAYAK GGEGGVAVAR KIFDQIVDKD
260 270 280 290 300
RVSYNSIMSV YAQSGMSNEA FEVFRRLVKN KVVTFNAITL STVLLAVSHS
310 320 330 340 350
GALRIGKCIH DQVIRMGLED DVIVGTSIID MYCKCGRVET ARKAFDRMKN
360 370 380 390 400
KNVRSWTAMI AGYGMHGHAA KALELFPAMI DSGVRPNYIT FVSVLAACSH
410 420 430 440 450
AGLHVEGWRW FNAMKGRFGV EPGLEHYGCM VDLLGRAGFL QKAYDLIQRM
460 470 480 490 500
KMKPDSIIWS SLLAACRIHK NVELAEISVA RLFELDSSNC GYYMLLSHIY
510 520 530 540 550
ADAGRWKDVE RVRMIMKNRG LVKPPGFSLL ELNGEVHVFL IGDEEHPQRE
560 570 580 590 600
KIYEFLAELN RKLLEAGYVS NTSSVCHDVD EEEKEMTLRV HSEKLAIAFG
610 620 630 640 650
IMNTVPGSTV NVVKNLRVCS DCHNVIKLIS KIVDREFVVR DAKRFHHFKD

GGCSCGDYW
Length:659
Mass (Da):73,766
Last modified:October 1, 2000 - v1
Checksum:iD7AFD5CECCDCA694
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti141N → D in BAF00431 (Ref. 3) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB016889 Genomic DNA Translation: BAB01225.1
CP002686 Genomic DNA Translation: AEE77215.1
AK228506 mRNA Translation: BAF00431.1
RefSeqiNP_001078212.1, NM_001084743.3
UniGeneiAt.71198

Genome annotation databases

EnsemblPlantsiAT3G26782.1; AT3G26782.1; AT3G26782
GeneIDi5008030
GrameneiAT3G26782.1; AT3G26782.1; AT3G26782
KEGGiath:AT3G26782

Similar proteinsi

Entry informationi

Entry nameiPP258_ARATH
AccessioniPrimary (citable) accession number: Q9LW32
Secondary accession number(s): Q0WR18
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: October 1, 2000
Last modified: April 25, 2018
This is version 97 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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