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Protein

RGG repeats nuclear RNA binding protein C

Gene

RGGC

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Binds RNA.By similarity

GO - Molecular functioni

  • mRNA binding Source: TAIR

Keywordsi

Molecular functionRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
RGG repeats nuclear RNA binding protein CCurated
Gene namesi
Name:RGGCCurated
Ordered Locus Names:At5g47210Imported
ORF Names:MQL5.6Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G47210
TAIRilocus:2171504 AT5G47210

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedCombined sources
ChainiPRO_00004383182 – 357RGG repeats nuclear RNA binding protein CAdd BLAST356

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylalanineCombined sources1
Modified residuei355PhosphoserineBy similarity1

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

PaxDbiQ9LVT8
PRIDEiQ9LVT8

PTM databases

iPTMnetiQ9LVT8

Expressioni

Gene expression databases

ExpressionAtlasiQ9LVT8 baseline and differential

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G47210.1

Structurei

3D structure databases

ProteinModelPortaliQ9LVT8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini239 – 299FFPROSITE-ProRule annotationAdd BLAST61

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi63 – 174Gly-richPROSITE-ProRule annotationAdd BLAST112
Compositional biasi185 – 242Glu-richPROSITE-ProRule annotationAdd BLAST58
Compositional biasi311 – 334Gly-richPROSITE-ProRule annotationAdd BLAST24

Sequence similaritiesi

Belongs to the RGGA protein family.Curated

Phylogenomic databases

eggNOGiKOG2945 Eukaryota
ENOG410YBHR LUCA
HOGENOMiHOG000238039
InParanoidiQ9LVT8
KOiK13199
OMAiPANDITC
OrthoDBiEOG09360W79
PhylomeDBiQ9LVT8

Family and domain databases

InterProiView protein in InterPro
IPR039764 HABP4/SERBP1
IPR006861 HABP4_PAIRBP1-bd
IPR019084 Stm1-like_N
PANTHERiPTHR12299 PTHR12299, 1 hit
PfamiView protein in Pfam
PF04774 HABP4_PAI-RBP1, 1 hit
PF09598 Stm1_N, 1 hit
SMARTiView protein in SMART
SM01233 HABP4_PAI-RBP1, 1 hit

Sequences (3)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 3 isoformsi produced by alternative splicing. AlignAdd to basket
Isoform 1 (identifier: Q9LVT8-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MASLNPFDLL GDDAEDPSQL AVALSQKVEK AAAAVQPPKA AKFPTKPAPP
60 70 80 90 100
SQAVRESRNA PQGGRGGTGG RGGFSRGRGN GGYNRDNRNN DAPGNENGFS
110 120 130 140 150
GGYRRPSEDA DGASRGGSVG GYRVGGGREG PRRGGVANGE SGDVERPPRN
160 170 180 190 200
YDRHSRTGHG TGMKRNGGGR GNWGTTEDDI PPTSEEPTTE VEKSPVAEKQ
210 220 230 240 250
GGEDETPEAK KELTAEEKAQ KEAEEAEARE MTLEEYEKIL EEKKKALQAT
260 270 280 290 300
KVEERKVDTK VFESMQQLSN KKNTDEEIFI KLGSDKEKRK DATEKAKKSL
310 320 330 340 350
SINEFLKPAD GKRYNGRGGG SRGRGGRGGR GEGGNQRYAK EAAAPAIGDT

AQFPSLG
Length:357
Mass (Da):37,999
Last modified:October 1, 2000 - v1
Checksum:i44170422CB1FEC1D
GO
Isoform 2 (identifier: Q9LVT8-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     247-305: LQATKVEERK...AKKSLSINEF → PAEEEVAVVV...VFRFSLVEFC
     306-357: Missing.

Note: No experimental confirmation available.Imported
Show »
Length:305
Mass (Da):32,784
Checksum:i3E8821094386C9B3
GO
Isoform 3 (identifier: Q9LVT8-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     299-301: SLS → VLH
     302-357: Missing.

Note: Derived from EST data. No experimental confirmation available.Imported
Show »
Length:301
Mass (Da):32,374
Checksum:i348DA72C688B1364
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti128R → L in AAM63072 (Ref. 6) Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_058645247 – 305LQATK…SINEF → PAEEEVAVVVVKEETKGMQK KLQLRRLETQLSSLRWASKD PWSFSLAISVFRFSLVEFC in isoform 2. Add BLAST59
Alternative sequenceiVSP_058646299 – 301SLS → VLH in isoform 3. 3
Alternative sequenceiVSP_058647302 – 357Missing in isoform 3. Add BLAST56
Alternative sequenceiVSP_058648306 – 357Missing in isoform 2. Add BLAST52

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB018117 Genomic DNA Translation: BAA97154.1
CP002688 Genomic DNA Translation: AED95484.1
CP002688 Genomic DNA Translation: AED95485.1
CP002688 Genomic DNA Translation: AED95486.1
AY140040 mRNA Translation: AAM98181.1
BT010371 mRNA Translation: AAQ56814.1
AK316963 mRNA Translation: BAH19662.1
AK226441 mRNA Translation: BAE98584.1
AY085859 mRNA Translation: AAM63072.1
RefSeqiNP_001078723.1, NM_001085254.1 [Q9LVT8-2]
NP_001078724.1, NM_001085255.1 [Q9LVT8-3]
NP_199532.1, NM_124092.4 [Q9LVT8-1]
UniGeneiAt.24575
At.24811
At.25480
At.27111

Genome annotation databases

EnsemblPlantsiAT5G47210.1; AT5G47210.1; AT5G47210 [Q9LVT8-1]
AT5G47210.2; AT5G47210.2; AT5G47210 [Q9LVT8-2]
AT5G47210.3; AT5G47210.3; AT5G47210 [Q9LVT8-3]
GeneIDi834767
GrameneiAT5G47210.1; AT5G47210.1; AT5G47210 [Q9LVT8-1]
AT5G47210.2; AT5G47210.2; AT5G47210 [Q9LVT8-2]
AT5G47210.3; AT5G47210.3; AT5G47210 [Q9LVT8-3]
KEGGiath:AT5G47210

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB018117 Genomic DNA Translation: BAA97154.1
CP002688 Genomic DNA Translation: AED95484.1
CP002688 Genomic DNA Translation: AED95485.1
CP002688 Genomic DNA Translation: AED95486.1
AY140040 mRNA Translation: AAM98181.1
BT010371 mRNA Translation: AAQ56814.1
AK316963 mRNA Translation: BAH19662.1
AK226441 mRNA Translation: BAE98584.1
AY085859 mRNA Translation: AAM63072.1
RefSeqiNP_001078723.1, NM_001085254.1 [Q9LVT8-2]
NP_001078724.1, NM_001085255.1 [Q9LVT8-3]
NP_199532.1, NM_124092.4 [Q9LVT8-1]
UniGeneiAt.24575
At.24811
At.25480
At.27111

3D structure databases

ProteinModelPortaliQ9LVT8
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G47210.1

PTM databases

iPTMnetiQ9LVT8

Proteomic databases

PaxDbiQ9LVT8
PRIDEiQ9LVT8

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G47210.1; AT5G47210.1; AT5G47210 [Q9LVT8-1]
AT5G47210.2; AT5G47210.2; AT5G47210 [Q9LVT8-2]
AT5G47210.3; AT5G47210.3; AT5G47210 [Q9LVT8-3]
GeneIDi834767
GrameneiAT5G47210.1; AT5G47210.1; AT5G47210 [Q9LVT8-1]
AT5G47210.2; AT5G47210.2; AT5G47210 [Q9LVT8-2]
AT5G47210.3; AT5G47210.3; AT5G47210 [Q9LVT8-3]
KEGGiath:AT5G47210

Organism-specific databases

AraportiAT5G47210
TAIRilocus:2171504 AT5G47210

Phylogenomic databases

eggNOGiKOG2945 Eukaryota
ENOG410YBHR LUCA
HOGENOMiHOG000238039
InParanoidiQ9LVT8
KOiK13199
OMAiPANDITC
OrthoDBiEOG09360W79
PhylomeDBiQ9LVT8

Miscellaneous databases

PROiPR:Q9LVT8

Gene expression databases

ExpressionAtlasiQ9LVT8 baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR039764 HABP4/SERBP1
IPR006861 HABP4_PAIRBP1-bd
IPR019084 Stm1-like_N
PANTHERiPTHR12299 PTHR12299, 1 hit
PfamiView protein in Pfam
PF04774 HABP4_PAI-RBP1, 1 hit
PF09598 Stm1_N, 1 hit
SMARTiView protein in SMART
SM01233 HABP4_PAI-RBP1, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRGGC_ARATH
AccessioniPrimary (citable) accession number: Q9LVT8
Secondary accession number(s): A8MQD7, A8MRX4, Q8LDQ7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 30, 2016
Last sequence update: October 1, 2000
Last modified: November 7, 2018
This is version 118 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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